RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-208ENST00000470045 NISCHQ9Y2I1 1504 aa34.87■■■■□ 3.17
COMMD3-208ENST00000470045 CCDC180Q9P1Z9 1646 aa31.21■■■□□ 2.59
COMMD3-208ENST00000470045 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
COMMD3-208ENST00000470045 ABCC9O60706 1549 aa30.63■■■□□ 2.49
COMMD3-208ENST00000470045 RB1CC1Q8TDY2 1594 aa29.43■■■□□ 2.3
COMMD3-208ENST00000470045 NACADO15069 1562 aa29.35■■■□□ 2.29
COMMD3-208ENST00000470045 MYO15BQ96JP2 1530 aa29.14■■■□□ 2.25
COMMD3-208ENST00000470045 ZCCHC6Q5VYS8 1495 aaKnown RBP29.03■■■□□ 2.24
COMMD3-208ENST00000470045 DCAF8L2P0C7V8 631 aa29.01■■■□□ 2.23
COMMD3-208ENST00000470045 DCAF1Q9Y4B6 1507 aa28.9■■■□□ 2.22
COMMD3-208ENST00000470045 CHIC1Q5VXU3 224 aa28.88■■■□□ 2.21
COMMD3-208ENST00000470045 UNC13AQ9UPW8 1703 aa28.85■■■□□ 2.21
COMMD3-208ENST00000470045 BICRAQ9NZM4 1560 aa28.59■■■□□ 2.17
COMMD3-208ENST00000470045 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
COMMD3-208ENST00000470045 SCRIBQ14160 1630 aa28.36■■■□□ 2.13
COMMD3-208ENST00000470045 DNAJC5BQ9UF47 199 aa28.33■■■□□ 2.13
COMMD3-208ENST00000470045 SHROOM4Q9ULL8 1493 aa28.29■■■□□ 2.12
COMMD3-208ENST00000470045 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
COMMD3-208ENST00000470045 CC2D2AQ9P2K1 1620 aa27.77■■■□□ 2.04
COMMD3-208ENST00000470045 CECR2Q9BXF3 1484 aa27.57■■■□□ 2
COMMD3-208ENST00000470045 SMARCA4P51532 1647 aa27.15■■□□□ 1.94
COMMD3-208ENST00000470045 BAZ1AQ9NRL2 1556 aaPredicted RBP27.06■■□□□ 1.92
COMMD3-208ENST00000470045 NCAPD3P42695 1498 aa27.06■■□□□ 1.92
COMMD3-208ENST00000470045 ATAD2BQ9ULI0 1458 aa27.02■■□□□ 1.92
COMMD3-208ENST00000470045 SMARCA2P51531 1590 aa27■■□□□ 1.91
COMMD3-208ENST00000470045 HMGXB3Q12766 1538 aa26.95■■□□□ 1.9
COMMD3-208ENST00000470045 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
COMMD3-208ENST00000470045 MROH2BQ7Z745 1585 aa26.87■■□□□ 1.89
COMMD3-208ENST00000470045 BAZ1BQ9UIG0 1483 aaKnown RBP26.77■■□□□ 1.88
COMMD3-208ENST00000470045 WIZO95785 1651 aa26.57■■□□□ 1.84
COMMD3-208ENST00000470045 SENP3Q9H4L4 574 aaPredicted RBP26.52■■□□□ 1.84
COMMD3-208ENST00000470045 NESP48681 1621 aa26.46■■□□□ 1.83
COMMD3-208ENST00000470045 RSF1Q96T23 1441 aaPredicted RBP26.44■■□□□ 1.82
COMMD3-208ENST00000470045 LAMC3Q9Y6N6 1575 aa26.41■■□□□ 1.82
COMMD3-208ENST00000470045 ERCC6Q03468 1493 aa26.41■■□□□ 1.82
COMMD3-208ENST00000470045 CUX2O14529 1486 aa26.3■■□□□ 1.8
COMMD3-208ENST00000470045 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
COMMD3-208ENST00000470045 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
COMMD3-208ENST00000470045 CADPSQ9ULU8 1353 aa26.2■■□□□ 1.79
COMMD3-208ENST00000470045 THOC2Q8NI27 1593 aaKnown RBP26.2■■□□□ 1.79
COMMD3-208ENST00000470045 PDS5BQ9NTI5 1447 aa26.17■■□□□ 1.78
COMMD3-208ENST00000470045 CFTRP13569 1480 aa26.04■■□□□ 1.76
COMMD3-208ENST00000470045 PHF23Q9BUL5 403 aaPredicted RBP26.04■■□□□ 1.76
COMMD3-208ENST00000470045 MRC2Q9UBG0 1479 aa25.96■■□□□ 1.75
COMMD3-208ENST00000470045 PRDM2Q13029 1718 aa25.94■■□□□ 1.74
COMMD3-208ENST00000470045 CCDC88BA6NC98 1476 aa25.93■■□□□ 1.74
COMMD3-208ENST00000470045 CEP164Q9UPV0 1460 aa25.93■■□□□ 1.74
COMMD3-208ENST00000470045 WDR62O43379 1518 aa25.93■■□□□ 1.74
COMMD3-208ENST00000470045 FANCD2Q9BXW9 1451 aa25.92■■□□□ 1.74
COMMD3-208ENST00000470045 DNAJC5Q9H3Z4 198 aa25.72■■□□□ 1.71
COMMD3-208ENST00000470045 URB2Q14146 1524 aaKnown RBP25.72■■□□□ 1.71
COMMD3-208ENST00000470045 TOPBP1Q92547 1522 aa25.51■■□□□ 1.67
COMMD3-208ENST00000470045 ABCC8Q09428 1581 aa25.48■■□□□ 1.67
COMMD3-208ENST00000470045 DNMBPQ6XZF7 1577 aa25.48■■□□□ 1.67
COMMD3-208ENST00000470045 SUPT5HO00267 1087 aaKnown RBP25.42■■□□□ 1.66
COMMD3-208ENST00000470045 IFT140Q96RY7 1462 aa25.4■■□□□ 1.66
COMMD3-208ENST00000470045 ZNF608Q9ULD9 1512 aaPredicted RBP25.3■■□□□ 1.64
COMMD3-208ENST00000470045 TARBP1Q13395 1621 aaKnown RBP25.3■■□□□ 1.64
COMMD3-208ENST00000470045 POLA1P09884 1462 aaPredicted RBP25.27■■□□□ 1.64
COMMD3-208ENST00000470045 EIF4G3O43432 1585 aaKnown RBP25.25■■□□□ 1.63
COMMD3-208ENST00000470045 CUX1P39880 1505 aa25.22■■□□□ 1.63
COMMD3-208ENST00000470045 FGD5Q6ZNL6 1462 aa25.16■■□□□ 1.62
COMMD3-208ENST00000470045 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
COMMD3-208ENST00000470045 WDR97A6NE52 1622 aa25.11■■□□□ 1.61
COMMD3-208ENST00000470045 SOGA1O94964 1423 aa25.11■■□□□ 1.61
COMMD3-208ENST00000470045 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.61
COMMD3-208ENST00000470045 OSCARQ8IYS5 282 aa25.05■■□□□ 1.6
COMMD3-208ENST00000470045 BIVM-ERCC5R4GMW8 1640 aa25■■□□□ 1.59
COMMD3-208ENST00000470045 CHD1O14646 1710 aa24.99■■□□□ 1.59
COMMD3-208ENST00000470045 TDRD9Q8NDG6 1382 aaKnown RBP24.98■■□□□ 1.59
COMMD3-208ENST00000470045 TOP2BQ02880 1626 aa24.97■■□□□ 1.59
COMMD3-208ENST00000470045 SYNJ1O43426 1573 aa24.93■■□□□ 1.58
COMMD3-208ENST00000470045 ABCA10Q8WWZ4 1543 aa24.93■■□□□ 1.58
COMMD3-208ENST00000470045 WRNQ14191 1432 aaPredicted RBP eCLIP24.93■■□□□ 1.58
COMMD3-208ENST00000470045 ABCA5Q8WWZ7 1642 aa24.9■■□□□ 1.58
COMMD3-208ENST00000470045 PBRM1Q86U86 1689 aa24.89■■□□□ 1.58
COMMD3-208ENST00000470045 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.57
COMMD3-208ENST00000470045 GRIN2BQ13224 1484 aa24.88■■□□□ 1.57
COMMD3-208ENST00000470045 MAGI1Q96QZ7 1491 aaPredicted RBP24.87■■□□□ 1.57
COMMD3-208ENST00000470045 GAPVD1Q14C86 1478 aa24.83■■□□□ 1.57
COMMD3-208ENST00000470045 FOXD1Q16676 465 aa24.81■■□□□ 1.56
COMMD3-208ENST00000470045 RIMBP3CA6NJZ7 1639 aa24.8■■□□□ 1.56
COMMD3-208ENST00000470045 RIMBP3BA6NNM3 1639 aa24.8■■□□□ 1.56
COMMD3-208ENST00000470045 RIMBP3Q9UFD9 1639 aa24.8■■□□□ 1.56
COMMD3-208ENST00000470045 SYNJ2O15056 1496 aa24.77■■□□□ 1.56
COMMD3-208ENST00000470045 ARHGEF11O15085 1522 aa24.75■■□□□ 1.55
COMMD3-208ENST00000470045 FBLN2P98095 1184 aa24.72■■□□□ 1.55
COMMD3-208ENST00000470045 CLASP1Q7Z460 1538 aa24.71■■□□□ 1.55
COMMD3-208ENST00000470045 ADAMTS12P58397 1594 aa24.67■■□□□ 1.54
COMMD3-208ENST00000470045 CHMP7Q8WUX9 453 aaPredicted RBP24.66■■□□□ 1.54
COMMD3-208ENST00000470045 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
COMMD3-208ENST00000470045 ERICH3Q5RHP9 1530 aa24.63■■□□□ 1.53
COMMD3-208ENST00000470045 GRIN2AQ12879 1464 aa24.58■■□□□ 1.53
COMMD3-208ENST00000470045 POTEDQ86YR6 584 aa24.58■■□□□ 1.53
COMMD3-208ENST00000470045 FHAD1B1AJZ9 1412 aa24.55■■□□□ 1.52
COMMD3-208ENST00000470045 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
COMMD3-208ENST00000470045 NUP160Q12769 1436 aa24.5■■□□□ 1.51
COMMD3-208ENST00000470045 CEP170Q5SW79 1584 aa24.5■■□□□ 1.51
COMMD3-208ENST00000470045 KIF27Q86VH2 1401 aa24.41■■□□□ 1.5
COMMD3-208ENST00000470045 CYB5RLQ6IPT4 315 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms