RNA–Protein interactions for RNA: ENST00000467886.1

COL3A1-204, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 3

Gene COL3A1, Length 226 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-204ENST00000467886 NISCHQ9Y2I1 1504 aa29.65■■■□□ 2.34
COL3A1-204ENST00000467886 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
COL3A1-204ENST00000467886 ABCC9O60706 1549 aa26.35■■□□□ 1.81
COL3A1-204ENST00000467886 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
COL3A1-204ENST00000467886 NACADO15069 1562 aa25.13■■□□□ 1.61
COL3A1-204ENST00000467886 DCAF8L2P0C7V8 631 aa25.07■■□□□ 1.6
COL3A1-204ENST00000467886 MYO15BQ96JP2 1530 aa24.85■■□□□ 1.57
COL3A1-204ENST00000467886 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.53
COL3A1-204ENST00000467886 DCAF1Q9Y4B6 1507 aa24.56■■□□□ 1.52
COL3A1-204ENST00000467886 PABPN1Q86U42 306 aaKnown RBP eCLIP24.55■■□□□ 1.52
COL3A1-204ENST00000467886 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
COL3A1-204ENST00000467886 DNAJC5BQ9UF47 199 aa24.45■■□□□ 1.5
COL3A1-204ENST00000467886 BICRAQ9NZM4 1560 aa24.33■■□□□ 1.49
COL3A1-204ENST00000467886 SHROOM4Q9ULL8 1493 aa24.29■■□□□ 1.48
COL3A1-204ENST00000467886 SCRIBQ14160 1630 aa24.15■■□□□ 1.46
COL3A1-204ENST00000467886 EIF4G1Q04637 1599 aaKnown RBP23.82■■□□□ 1.4
COL3A1-204ENST00000467886 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
COL3A1-204ENST00000467886 CECR2Q9BXF3 1484 aa23.78■■□□□ 1.4
COL3A1-204ENST00000467886 NCAPD3P42695 1498 aa23.17■■□□□ 1.3
COL3A1-204ENST00000467886 SMARCA2P51531 1590 aa23.12■■□□□ 1.29
COL3A1-204ENST00000467886 SMARCA4P51532 1647 aa23.08■■□□□ 1.28
COL3A1-204ENST00000467886 BAZ1AQ9NRL2 1556 aaPredicted RBP23.07■■□□□ 1.28
COL3A1-204ENST00000467886 ATAD2BQ9ULI0 1458 aa23.07■■□□□ 1.28
COL3A1-204ENST00000467886 HMGXB3Q12766 1538 aa23.01■■□□□ 1.27
COL3A1-204ENST00000467886 BAZ1BQ9UIG0 1483 aaKnown RBP22.93■■□□□ 1.26
COL3A1-204ENST00000467886 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
COL3A1-204ENST00000467886 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
COL3A1-204ENST00000467886 MROH2BQ7Z745 1585 aa22.77■■□□□ 1.24
COL3A1-204ENST00000467886 CUX2O14529 1486 aa22.76■■□□□ 1.23
COL3A1-204ENST00000467886 LAMC3Q9Y6N6 1575 aa22.64■■□□□ 1.22
COL3A1-204ENST00000467886 NESP48681 1621 aa22.61■■□□□ 1.21
COL3A1-204ENST00000467886 PDS5BQ9NTI5 1447 aa22.57■■□□□ 1.2
COL3A1-204ENST00000467886 DNAJC5Q9H3Z4 198 aa22.52■■□□□ 1.2
COL3A1-204ENST00000467886 WIZO95785 1651 aa22.49■■□□□ 1.19
COL3A1-204ENST00000467886 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
COL3A1-204ENST00000467886 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
COL3A1-204ENST00000467886 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
COL3A1-204ENST00000467886 KIF21AQ7Z4S6 1674 aa22.35■■□□□ 1.17
COL3A1-204ENST00000467886 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
COL3A1-204ENST00000467886 MRC2Q9UBG0 1479 aa22.28■■□□□ 1.16
COL3A1-204ENST00000467886 CEP164Q9UPV0 1460 aa22.26■■□□□ 1.15
COL3A1-204ENST00000467886 CFTRP13569 1480 aa22.23■■□□□ 1.15
COL3A1-204ENST00000467886 FANCD2Q9BXW9 1451 aa22.21■■□□□ 1.15
COL3A1-204ENST00000467886 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
COL3A1-204ENST00000467886 WDR62O43379 1518 aa22.18■■□□□ 1.14
COL3A1-204ENST00000467886 CCDC88BA6NC98 1476 aa22.03■■□□□ 1.12
COL3A1-204ENST00000467886 PRDM2Q13029 1718 aa21.99■■□□□ 1.11
COL3A1-204ENST00000467886 URB2Q14146 1524 aaKnown RBP21.93■■□□□ 1.1
COL3A1-204ENST00000467886 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
COL3A1-204ENST00000467886 IFT140Q96RY7 1462 aa21.82■■□□□ 1.08
COL3A1-204ENST00000467886 OSCARQ8IYS5 282 aa21.8■■□□□ 1.08
COL3A1-204ENST00000467886 TOPBP1Q92547 1522 aa21.77■■□□□ 1.08
COL3A1-204ENST00000467886 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
COL3A1-204ENST00000467886 ZNF608Q9ULD9 1512 aaPredicted RBP21.61■■□□□ 1.05
COL3A1-204ENST00000467886 SUPT5HO00267 1087 aaKnown RBP21.61■■□□□ 1.05
COL3A1-204ENST00000467886 TRIM41Q8WV44 630 aa21.61■■□□□ 1.05
COL3A1-204ENST00000467886 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
COL3A1-204ENST00000467886 EIF4G3O43432 1585 aaKnown RBP21.55■■□□□ 1.04
COL3A1-204ENST00000467886 TARBP1Q13395 1621 aaKnown RBP21.53■■□□□ 1.04
COL3A1-204ENST00000467886 SOGA1O94964 1423 aa21.53■■□□□ 1.04
COL3A1-204ENST00000467886 AQRO60306 1485 aaKnown RBP eCLIP21.49■■□□□ 1.03
COL3A1-204ENST00000467886 WDR97A6NE52 1622 aa21.47■■□□□ 1.03
COL3A1-204ENST00000467886 FBLN2P98095 1184 aa21.45■■□□□ 1.02
COL3A1-204ENST00000467886 FGD5Q6ZNL6 1462 aa21.45■■□□□ 1.02
COL3A1-204ENST00000467886 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
COL3A1-204ENST00000467886 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
COL3A1-204ENST00000467886 CUX1P39880 1505 aa21.4■■□□□ 1.02
COL3A1-204ENST00000467886 CHMP7Q8WUX9 453 aaPredicted RBP21.35■■□□□ 1.01
COL3A1-204ENST00000467886 GRIN2BQ13224 1484 aa21.34■■□□□ 1.01
COL3A1-204ENST00000467886 MAGI1Q96QZ7 1491 aaPredicted RBP21.33■■□□□ 1.01
COL3A1-204ENST00000467886 RIMBP3CA6NJZ7 1639 aa21.33■■□□□ 1
COL3A1-204ENST00000467886 RIMBP3BA6NNM3 1639 aa21.33■■□□□ 1
COL3A1-204ENST00000467886 RIMBP3Q9UFD9 1639 aa21.33■■□□□ 1
COL3A1-204ENST00000467886 CHD1O14646 1710 aa21.32■■□□□ 1
COL3A1-204ENST00000467886 ARHGEF11O15085 1522 aa21.31■■□□□ 1
COL3A1-204ENST00000467886 SNAPC4Q5SXM2 1469 aa21.3■■□□□ 1
COL3A1-204ENST00000467886 WRNQ14191 1432 aaPredicted RBP eCLIP21.28■■□□□ 1
COL3A1-204ENST00000467886 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
COL3A1-204ENST00000467886 ABCA10Q8WWZ4 1543 aa21.24■□□□□ 0.99
COL3A1-204ENST00000467886 SYNJ2O15056 1496 aa21.24■□□□□ 0.99
COL3A1-204ENST00000467886 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
COL3A1-204ENST00000467886 CYB5RLQ6IPT4 315 aa21.21■□□□□ 0.99
COL3A1-204ENST00000467886 TOP2BQ02880 1626 aa21.17■□□□□ 0.98
COL3A1-204ENST00000467886 PBRM1Q86U86 1689 aa21.16■□□□□ 0.98
COL3A1-204ENST00000467886 BIVM-ERCC5R4GMW8 1640 aa21.15■□□□□ 0.98
COL3A1-204ENST00000467886 ABCA5Q8WWZ7 1642 aa21.14■□□□□ 0.97
COL3A1-204ENST00000467886 CLASP1Q7Z460 1538 aa21.11■□□□□ 0.97
COL3A1-204ENST00000467886 ARAP1Q96P48 1450 aa21.07■□□□□ 0.96
COL3A1-204ENST00000467886 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
COL3A1-204ENST00000467886 FHAD1B1AJZ9 1412 aa21.03■□□□□ 0.96
COL3A1-204ENST00000467886 GRIN2AQ12879 1464 aa21.02■□□□□ 0.96
COL3A1-204ENST00000467886 ERICH3Q5RHP9 1530 aa21.02■□□□□ 0.96
COL3A1-204ENST00000467886 TRHP20396 242 aaPredicted RBP20.99■□□□□ 0.95
COL3A1-204ENST00000467886 ADAMTS12P58397 1594 aa20.98■□□□□ 0.95
COL3A1-204ENST00000467886 NUP160Q12769 1436 aa20.92■□□□□ 0.94
COL3A1-204ENST00000467886 KIF27Q86VH2 1401 aa20.87■□□□□ 0.93
COL3A1-204ENST00000467886 CEP170Q5SW79 1584 aa20.85■□□□□ 0.93
COL3A1-204ENST00000467886 JPH4Q96JJ6 628 aa20.78■□□□□ 0.92
COL3A1-204ENST00000467886 SHROOM2Q13796 1616 aa20.78■□□□□ 0.92
COL3A1-204ENST00000467886 CUL7Q14999 1698 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms