RNA–Protein interactions for RNA: ENST00000467852.1

VPS26A-204, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3

Gene VPS26A, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-204ENST00000467852 NISCHQ9Y2I1 1504 aa30.56■■■□□ 2.48
VPS26A-204ENST00000467852 ABCC9O60706 1549 aa29.15■■■□□ 2.26
VPS26A-204ENST00000467852 DNAJC5BQ9UF47 199 aa28.42■■■□□ 2.14
VPS26A-204ENST00000467852 AEBP2Q6ZN18 517 aaPredicted RBP28.2■■■□□ 2.1
VPS26A-204ENST00000467852 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
VPS26A-204ENST00000467852 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
VPS26A-204ENST00000467852 DNAJC5Q9H3Z4 198 aa27.05■■□□□ 1.92
VPS26A-204ENST00000467852 PABPN1Q86U42 306 aaKnown RBP eCLIP26.97■■□□□ 1.91
VPS26A-204ENST00000467852 NACADO15069 1562 aa26.75■■□□□ 1.87
VPS26A-204ENST00000467852 CHIC1Q5VXU3 224 aa26.68■■□□□ 1.86
VPS26A-204ENST00000467852 UNC13AQ9UPW8 1703 aa26.59■■□□□ 1.85
VPS26A-204ENST00000467852 DCAF8L2P0C7V8 631 aa26.46■■□□□ 1.83
VPS26A-204ENST00000467852 BICRAQ9NZM4 1560 aa26.41■■□□□ 1.82
VPS26A-204ENST00000467852 CECR2Q9BXF3 1484 aa26.4■■□□□ 1.82
VPS26A-204ENST00000467852 CC2D2AQ9P2K1 1620 aa26.27■■□□□ 1.8
VPS26A-204ENST00000467852 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
VPS26A-204ENST00000467852 MYO15BQ96JP2 1530 aa25.94■■□□□ 1.74
VPS26A-204ENST00000467852 EIF4G1Q04637 1599 aaKnown RBP25.9■■□□□ 1.74
VPS26A-204ENST00000467852 CUX2O14529 1486 aa25.65■■□□□ 1.7
VPS26A-204ENST00000467852 SCRIBQ14160 1630 aa25.39■■□□□ 1.66
VPS26A-204ENST00000467852 TRIM41Q8WV44 630 aa25.39■■□□□ 1.66
VPS26A-204ENST00000467852 ERCC6Q03468 1493 aa25.31■■□□□ 1.64
VPS26A-204ENST00000467852 DCAF1Q9Y4B6 1507 aa25.16■■□□□ 1.62
VPS26A-204ENST00000467852 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
VPS26A-204ENST00000467852 NCAPD3P42695 1498 aa24.7■■□□□ 1.54
VPS26A-204ENST00000467852 NESP48681 1621 aa24.67■■□□□ 1.54
VPS26A-204ENST00000467852 THOC2Q8NI27 1593 aaKnown RBP24.65■■□□□ 1.54
VPS26A-204ENST00000467852 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
VPS26A-204ENST00000467852 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
VPS26A-204ENST00000467852 HMGXB3Q12766 1538 aa24.38■■□□□ 1.49
VPS26A-204ENST00000467852 LAMC3Q9Y6N6 1575 aa24.34■■□□□ 1.49
VPS26A-204ENST00000467852 OSCARQ8IYS5 282 aa24.34■■□□□ 1.49
VPS26A-204ENST00000467852 KIF21AQ7Z4S6 1674 aa24.33■■□□□ 1.49
VPS26A-204ENST00000467852 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
VPS26A-204ENST00000467852 PDS5BQ9NTI5 1447 aa24.28■■□□□ 1.48
VPS26A-204ENST00000467852 BAZ1BQ9UIG0 1483 aaKnown RBP24.15■■□□□ 1.46
VPS26A-204ENST00000467852 SENP3Q9H4L4 574 aaPredicted RBP24.1■■□□□ 1.45
VPS26A-204ENST00000467852 SMARCA4P51532 1647 aa24.1■■□□□ 1.45
VPS26A-204ENST00000467852 MRC2Q9UBG0 1479 aa24.09■■□□□ 1.45
VPS26A-204ENST00000467852 RIMBP3CA6NJZ7 1639 aa24.07■■□□□ 1.44
VPS26A-204ENST00000467852 RIMBP3BA6NNM3 1639 aa24.07■■□□□ 1.44
VPS26A-204ENST00000467852 RIMBP3Q9UFD9 1639 aa24.07■■□□□ 1.44
VPS26A-204ENST00000467852 WDR62O43379 1518 aa24.05■■□□□ 1.44
VPS26A-204ENST00000467852 TRHP20396 242 aaPredicted RBP24.02■■□□□ 1.44
VPS26A-204ENST00000467852 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
VPS26A-204ENST00000467852 ARHGEF11O15085 1522 aa23.86■■□□□ 1.41
VPS26A-204ENST00000467852 PEG3Q9GZU2 1588 aa23.85■■□□□ 1.41
VPS26A-204ENST00000467852 CYB5RLQ6IPT4 315 aa23.84■■□□□ 1.41
VPS26A-204ENST00000467852 CEP164Q9UPV0 1460 aa23.76■■□□□ 1.39
VPS26A-204ENST00000467852 PHF23Q9BUL5 403 aaPredicted RBP23.75■■□□□ 1.39
VPS26A-204ENST00000467852 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
VPS26A-204ENST00000467852 ARAP1Q96P48 1450 aa23.53■■□□□ 1.36
VPS26A-204ENST00000467852 MROH2BQ7Z745 1585 aa23.51■■□□□ 1.35
VPS26A-204ENST00000467852 URB2Q14146 1524 aaKnown RBP23.47■■□□□ 1.35
VPS26A-204ENST00000467852 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
VPS26A-204ENST00000467852 CFTRP13569 1480 aa23.35■■□□□ 1.33
VPS26A-204ENST00000467852 RSF1Q96T23 1441 aaPredicted RBP23.34■■□□□ 1.33
VPS26A-204ENST00000467852 ILDR1Q86SU0 546 aaPredicted RBP23.34■■□□□ 1.33
VPS26A-204ENST00000467852 IFT140Q96RY7 1462 aa23.34■■□□□ 1.33
VPS26A-204ENST00000467852 CHD1O14646 1710 aa23.28■■□□□ 1.32
VPS26A-204ENST00000467852 FBLN2P98095 1184 aa23.24■■□□□ 1.31
VPS26A-204ENST00000467852 WIZO95785 1651 aa23.19■■□□□ 1.3
VPS26A-204ENST00000467852 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
VPS26A-204ENST00000467852 AQRO60306 1485 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS26A-204ENST00000467852 PRDM2Q13029 1718 aa23.05■■□□□ 1.28
VPS26A-204ENST00000467852 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
VPS26A-204ENST00000467852 ABCC8Q09428 1581 aa22.96■■□□□ 1.27
VPS26A-204ENST00000467852 CLASP1Q7Z460 1538 aa22.95■■□□□ 1.26
VPS26A-204ENST00000467852 TARBP1Q13395 1621 aaKnown RBP22.9■■□□□ 1.26
VPS26A-204ENST00000467852 SYNJ1O43426 1573 aa22.89■■□□□ 1.25
VPS26A-204ENST00000467852 CHMP7Q8WUX9 453 aaPredicted RBP22.86■■□□□ 1.25
VPS26A-204ENST00000467852 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
VPS26A-204ENST00000467852 DNMBPQ6XZF7 1577 aa22.84■■□□□ 1.25
VPS26A-204ENST00000467852 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
VPS26A-204ENST00000467852 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
VPS26A-204ENST00000467852 KDM4FA0A1W2PPD8 638 aa22.75■■□□□ 1.23
VPS26A-204ENST00000467852 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
VPS26A-204ENST00000467852 POLA1P09884 1462 aaPredicted RBP22.7■■□□□ 1.22
VPS26A-204ENST00000467852 MAGI1Q96QZ7 1491 aaPredicted RBP22.67■■□□□ 1.22
VPS26A-204ENST00000467852 KIF13AQ9H1H9 1805 aa22.67■■□□□ 1.22
VPS26A-204ENST00000467852 RAD54L2Q9Y4B4 1467 aa22.66■■□□□ 1.22
VPS26A-204ENST00000467852 SOGA1O94964 1423 aa22.63■■□□□ 1.21
VPS26A-204ENST00000467852 SYNJ2O15056 1496 aa22.61■■□□□ 1.21
VPS26A-204ENST00000467852 WDR97A6NE52 1622 aa22.61■■□□□ 1.21
VPS26A-204ENST00000467852 CCDC88BA6NC98 1476 aa22.58■■□□□ 1.2
VPS26A-204ENST00000467852 GRIN2BQ13224 1484 aa22.55■■□□□ 1.2
VPS26A-204ENST00000467852 ERCC6L2Q5T890 1561 aa22.49■■□□□ 1.19
VPS26A-204ENST00000467852 FAM69CQ0P6D2 419 aa22.48■■□□□ 1.19
VPS26A-204ENST00000467852 FOXD1Q16676 465 aa22.45■■□□□ 1.18
VPS26A-204ENST00000467852 KDM6BO15054 1643 aa22.43■■□□□ 1.18
VPS26A-204ENST00000467852 FBXO41Q8TF61 875 aa22.39■■□□□ 1.17
VPS26A-204ENST00000467852 FGD5Q6ZNL6 1462 aa22.39■■□□□ 1.17
VPS26A-204ENST00000467852 ABCC10Q5T3U5 1492 aa22.38■■□□□ 1.17
VPS26A-204ENST00000467852 PBRM1Q86U86 1689 aa22.37■■□□□ 1.17
VPS26A-204ENST00000467852 CEP170Q5SW79 1584 aa22.37■■□□□ 1.17
VPS26A-204ENST00000467852 HECW2Q9P2P5 1572 aa22.34■■□□□ 1.17
VPS26A-204ENST00000467852 NPM1P06748 294 aaKnown RBP eCLIP22.33■■□□□ 1.17
VPS26A-204ENST00000467852 TSPOAP1O95153 1857 aa22.26■■□□□ 1.15
VPS26A-204ENST00000467852 ADGRL1O94910 1474 aa22.26■■□□□ 1.15
VPS26A-204ENST00000467852 DIP2BQ9P265 1576 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 667.2 ms