RNA–Protein interactions for RNA: ENST00000467514.1

PRPF3-203, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 3

Gene PRPF3, Length 1,097 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-203ENST00000467514 NISCHQ9Y2I1 1504 aa27■■□□□ 1.91
PRPF3-203ENST00000467514 ABCC9O60706 1549 aa24.95■■□□□ 1.58
PRPF3-203ENST00000467514 CCDC180Q9P1Z9 1646 aa24.49■■□□□ 1.51
PRPF3-203ENST00000467514 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
PRPF3-203ENST00000467514 RB1CC1Q8TDY2 1594 aa23.56■■□□□ 1.36
PRPF3-203ENST00000467514 NACADO15069 1562 aa23.23■■□□□ 1.31
PRPF3-203ENST00000467514 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
PRPF3-203ENST00000467514 PABPN1Q86U42 306 aaKnown RBP eCLIP23.14■■□□□ 1.29
PRPF3-203ENST00000467514 UNC13AQ9UPW8 1703 aa23.01■■□□□ 1.27
PRPF3-203ENST00000467514 BICRAQ9NZM4 1560 aa22.77■■□□□ 1.24
PRPF3-203ENST00000467514 MYO15BQ96JP2 1530 aa22.67■■□□□ 1.22
PRPF3-203ENST00000467514 CECR2Q9BXF3 1484 aa22.5■■□□□ 1.19
PRPF3-203ENST00000467514 CC2D2AQ9P2K1 1620 aa22.49■■□□□ 1.19
PRPF3-203ENST00000467514 SHROOM4Q9ULL8 1493 aa22.46■■□□□ 1.19
PRPF3-203ENST00000467514 SCRIBQ14160 1630 aa22.35■■□□□ 1.17
PRPF3-203ENST00000467514 EIF4G1Q04637 1599 aaKnown RBP22.32■■□□□ 1.16
PRPF3-203ENST00000467514 ZCCHC6Q5VYS8 1495 aaKnown RBP22.28■■□□□ 1.16
PRPF3-203ENST00000467514 DCAF1Q9Y4B6 1507 aa22.23■■□□□ 1.15
PRPF3-203ENST00000467514 DNAJC5Q9H3Z4 198 aa22.08■■□□□ 1.13
PRPF3-203ENST00000467514 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
PRPF3-203ENST00000467514 CUX2O14529 1486 aa21.65■■□□□ 1.06
PRPF3-203ENST00000467514 NCAPD3P42695 1498 aa21.38■■□□□ 1.01
PRPF3-203ENST00000467514 ATAD2BQ9ULI0 1458 aa21.29■■□□□ 1
PRPF3-203ENST00000467514 SMARCA2P51531 1590 aa21.28■■□□□ 1
PRPF3-203ENST00000467514 NESP48681 1621 aa21.26■□□□□ 0.99
PRPF3-203ENST00000467514 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
PRPF3-203ENST00000467514 SMARCA4P51532 1647 aa21.22■□□□□ 0.99
PRPF3-203ENST00000467514 BAZ1BQ9UIG0 1483 aaKnown RBP21.15■□□□□ 0.98
PRPF3-203ENST00000467514 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.97
PRPF3-203ENST00000467514 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
PRPF3-203ENST00000467514 LAMC3Q9Y6N6 1575 aa21.07■□□□□ 0.96
PRPF3-203ENST00000467514 BAZ1AQ9NRL2 1556 aaPredicted RBP21.05■□□□□ 0.96
PRPF3-203ENST00000467514 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
PRPF3-203ENST00000467514 PDS5BQ9NTI5 1447 aa20.97■□□□□ 0.95
PRPF3-203ENST00000467514 PEG3Q9GZU2 1588 aa20.92■□□□□ 0.94
PRPF3-203ENST00000467514 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
PRPF3-203ENST00000467514 MROH2BQ7Z745 1585 aa20.81■□□□□ 0.92
PRPF3-203ENST00000467514 CADPSQ9ULU8 1353 aa20.75■□□□□ 0.91
PRPF3-203ENST00000467514 WDR62O43379 1518 aa20.74■□□□□ 0.91
PRPF3-203ENST00000467514 CEP164Q9UPV0 1460 aa20.68■□□□□ 0.9
PRPF3-203ENST00000467514 OSCARQ8IYS5 282 aa20.6■□□□□ 0.89
PRPF3-203ENST00000467514 WIZO95785 1651 aa20.6■□□□□ 0.89
PRPF3-203ENST00000467514 FANCD2Q9BXW9 1451 aa20.57■□□□□ 0.88
PRPF3-203ENST00000467514 CFTRP13569 1480 aa20.41■□□□□ 0.86
PRPF3-203ENST00000467514 RIMBP3CA6NJZ7 1639 aa20.41■□□□□ 0.86
PRPF3-203ENST00000467514 RIMBP3BA6NNM3 1639 aa20.41■□□□□ 0.86
PRPF3-203ENST00000467514 RIMBP3Q9UFD9 1639 aa20.41■□□□□ 0.86
PRPF3-203ENST00000467514 URB2Q14146 1524 aaKnown RBP20.39■□□□□ 0.85
PRPF3-203ENST00000467514 PRDM2Q13029 1718 aa20.3■□□□□ 0.84
PRPF3-203ENST00000467514 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
PRPF3-203ENST00000467514 ARHGEF11O15085 1522 aa20.27■□□□□ 0.84
PRPF3-203ENST00000467514 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
PRPF3-203ENST00000467514 ZNF608Q9ULD9 1512 aaPredicted RBP20.22■□□□□ 0.83
PRPF3-203ENST00000467514 TRHP20396 242 aaPredicted RBP20.21■□□□□ 0.83
PRPF3-203ENST00000467514 RSF1Q96T23 1441 aaPredicted RBP20.19■□□□□ 0.82
PRPF3-203ENST00000467514 CYB5RLQ6IPT4 315 aa20.19■□□□□ 0.82
PRPF3-203ENST00000467514 EIF4G3O43432 1585 aaKnown RBP20.16■□□□□ 0.82
PRPF3-203ENST00000467514 CHD1O14646 1710 aa20.12■□□□□ 0.81
PRPF3-203ENST00000467514 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
PRPF3-203ENST00000467514 FBLN2P98095 1184 aa20.09■□□□□ 0.81
PRPF3-203ENST00000467514 ABCC8Q09428 1581 aa20.06■□□□□ 0.8
PRPF3-203ENST00000467514 CCDC88BA6NC98 1476 aa20.03■□□□□ 0.8
PRPF3-203ENST00000467514 DNMBPQ6XZF7 1577 aa20.03■□□□□ 0.8
PRPF3-203ENST00000467514 ARAP1Q96P48 1450 aa20.02■□□□□ 0.8
PRPF3-203ENST00000467514 AQRO60306 1485 aaKnown RBP eCLIP19.99■□□□□ 0.792e-8■■■■■ 44.6
PRPF3-203ENST00000467514 AEBP2Q6ZN18 517 aaPredicted RBP19.99■□□□□ 0.79
PRPF3-203ENST00000467514 TARBP1Q13395 1621 aaKnown RBP19.94■□□□□ 0.78
PRPF3-203ENST00000467514 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
PRPF3-203ENST00000467514 SYNJ1O43426 1573 aa19.83■□□□□ 0.76
PRPF3-203ENST00000467514 SNAPC4Q5SXM2 1469 aa19.82■□□□□ 0.76
PRPF3-203ENST00000467514 RAD54L2Q9Y4B4 1467 aa19.82■□□□□ 0.76
PRPF3-203ENST00000467514 TDRD9Q8NDG6 1382 aaKnown RBP19.82■□□□□ 0.76
PRPF3-203ENST00000467514 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
PRPF3-203ENST00000467514 SOGA1O94964 1423 aa19.79■□□□□ 0.76
PRPF3-203ENST00000467514 CLASP1Q7Z460 1538 aa19.77■□□□□ 0.76
PRPF3-203ENST00000467514 WDR97A6NE52 1622 aa19.75■□□□□ 0.75
PRPF3-203ENST00000467514 MAGI1Q96QZ7 1491 aaPredicted RBP19.73■□□□□ 0.75
PRPF3-203ENST00000467514 FGD5Q6ZNL6 1462 aa19.72■□□□□ 0.75
PRPF3-203ENST00000467514 GRIN2BQ13224 1484 aa19.68■□□□□ 0.74
PRPF3-203ENST00000467514 SYNJ2O15056 1496 aa19.67■□□□□ 0.74
PRPF3-203ENST00000467514 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
PRPF3-203ENST00000467514 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
PRPF3-203ENST00000467514 CUX1P39880 1505 aa19.6■□□□□ 0.73
PRPF3-203ENST00000467514 ABCA5Q8WWZ7 1642 aa19.46■□□□□ 0.71
PRPF3-203ENST00000467514 ERCC6L2Q5T890 1561 aa19.44■□□□□ 0.7
PRPF3-203ENST00000467514 GRIN2AQ12879 1464 aa19.43■□□□□ 0.7
PRPF3-203ENST00000467514 ABCA10Q8WWZ4 1543 aa19.42■□□□□ 0.7
PRPF3-203ENST00000467514 CEP170Q5SW79 1584 aa19.4■□□□□ 0.7
PRPF3-203ENST00000467514 ADAMTS12P58397 1594 aa19.38■□□□□ 0.69
PRPF3-203ENST00000467514 KIF13AQ9H1H9 1805 aa19.36■□□□□ 0.69
PRPF3-203ENST00000467514 SUPT5HO00267 1087 aaKnown RBP19.35■□□□□ 0.69
PRPF3-203ENST00000467514 NUP160Q12769 1436 aa19.32■□□□□ 0.68
PRPF3-203ENST00000467514 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
PRPF3-203ENST00000467514 SHROOM2Q13796 1616 aa19.3■□□□□ 0.68
PRPF3-203ENST00000467514 FHAD1B1AJZ9 1412 aa19.28■□□□□ 0.68
PRPF3-203ENST00000467514 NPM1P06748 294 aaKnown RBP eCLIP19.25■□□□□ 0.67
PRPF3-203ENST00000467514 PRG4Q92954 1404 aaPredicted RBP19.25■□□□□ 0.67
PRPF3-203ENST00000467514 FAM69CQ0P6D2 419 aa19.22■□□□□ 0.67
PRPF3-203ENST00000467514 ERICH3Q5RHP9 1530 aa19.2■□□□□ 0.66
PRPF3-203ENST00000467514 BIVM-ERCC5R4GMW8 1640 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms