RNA–Protein interactions for RNA: ENST00000466963.1

CXXC4-202, Transcript of CXXC finger protein 4, humanhuman

TSL 1 (best)

Gene CXXC4, Length 3,130 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXXC4-202ENST00000466963 NISCHQ9Y2I1 1504 aa14.81□□□□□ -0.04
CXXC4-202ENST00000466963 CCDC180Q9P1Z9 1646 aa13.73□□□□□ -0.21
CXXC4-202ENST00000466963 ABCC9O60706 1549 aa13.37□□□□□ -0.27
CXXC4-202ENST00000466963 RB1CC1Q8TDY2 1594 aa13.07□□□□□ -0.32
CXXC4-202ENST00000466963 NACADO15069 1562 aa12.99□□□□□ -0.33
CXXC4-202ENST00000466963 MYO15BQ96JP2 1530 aa12.93□□□□□ -0.34
CXXC4-202ENST00000466963 SHROOM4Q9ULL8 1493 aa12.89□□□□□ -0.35
CXXC4-202ENST00000466963 DNAJC5BQ9UF47 199 aa12.59□□□□□ -0.39
CXXC4-202ENST00000466963 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
CXXC4-202ENST00000466963 UNC13AQ9UPW8 1703 aa12.53□□□□□ -0.4
CXXC4-202ENST00000466963 BICRAQ9NZM4 1560 aa12.47□□□□□ -0.41
CXXC4-202ENST00000466963 CC2D2AQ9P2K1 1620 aa12.26□□□□□ -0.45
CXXC4-202ENST00000466963 CECR2Q9BXF3 1484 aa12.26□□□□□ -0.45
CXXC4-202ENST00000466963 ZCCHC6Q5VYS8 1495 aaKnown RBP12.25□□□□□ -0.45
CXXC4-202ENST00000466963 EIF4G1Q04637 1599 aaKnown RBP12.23□□□□□ -0.45
CXXC4-202ENST00000466963 PABPN1Q86U42 306 aaKnown RBP eCLIP12.2□□□□□ -0.46
CXXC4-202ENST00000466963 DNAJC5Q9H3Z4 198 aa12.14□□□□□ -0.47
CXXC4-202ENST00000466963 CUX2O14529 1486 aa12.14□□□□□ -0.47
CXXC4-202ENST00000466963 DCAF8L2P0C7V8 631 aa12.01□□□□□ -0.49
CXXC4-202ENST00000466963 SCRIBQ14160 1630 aa11.98□□□□□ -0.49
CXXC4-202ENST00000466963 AEBP2Q6ZN18 517 aaPredicted RBP11.89□□□□□ -0.51
CXXC4-202ENST00000466963 NCAPD3P42695 1498 aa11.89□□□□□ -0.51
CXXC4-202ENST00000466963 HMGXB3Q12766 1538 aa11.86□□□□□ -0.51
CXXC4-202ENST00000466963 SMARCA2P51531 1590 aa11.82□□□□□ -0.52
CXXC4-202ENST00000466963 ERCC6Q03468 1493 aa11.74□□□□□ -0.53
CXXC4-202ENST00000466963 LAMC3Q9Y6N6 1575 aa11.73□□□□□ -0.53
CXXC4-202ENST00000466963 PEG3Q9GZU2 1588 aa11.72□□□□□ -0.53
CXXC4-202ENST00000466963 ATAD2BQ9ULI0 1458 aa11.66□□□□□ -0.54
CXXC4-202ENST00000466963 THOC2Q8NI27 1593 aaKnown RBP11.63□□□□□ -0.55
CXXC4-202ENST00000466963 BAZ1AQ9NRL2 1556 aaPredicted RBP11.62□□□□□ -0.55
CXXC4-202ENST00000466963 SMARCA4P51532 1647 aa11.62□□□□□ -0.55
CXXC4-202ENST00000466963 PDS5BQ9NTI5 1447 aa11.6□□□□□ -0.55
CXXC4-202ENST00000466963 BAZ1BQ9UIG0 1483 aaKnown RBP11.54□□□□□ -0.56
CXXC4-202ENST00000466963 WDR62O43379 1518 aa11.49□□□□□ -0.57
CXXC4-202ENST00000466963 MRC2Q9UBG0 1479 aa11.47□□□□□ -0.57
CXXC4-202ENST00000466963 CHIC1Q5VXU3 224 aa11.44□□□□□ -0.58
CXXC4-202ENST00000466963 CADPSQ9ULU8 1353 aa11.4□□□□□ -0.58
CXXC4-202ENST00000466963 KIF21AQ7Z4S6 1674 aa11.39□□□□□ -0.59
CXXC4-202ENST00000466963 NESP48681 1621 aa11.34□□□□□ -0.59
CXXC4-202ENST00000466963 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
CXXC4-202ENST00000466963 PRDM2Q13029 1718 aa11.3□□□□□ -0.6
CXXC4-202ENST00000466963 ABCC8Q09428 1581 aa11.28□□□□□ -0.6
CXXC4-202ENST00000466963 WDR97A6NE52 1622 aa11.27□□□□□ -0.61
CXXC4-202ENST00000466963 OSCARQ8IYS5 282 aa11.26□□□□□ -0.61
CXXC4-202ENST00000466963 CFTRP13569 1480 aa11.25□□□□□ -0.61
CXXC4-202ENST00000466963 MROH2BQ7Z745 1585 aa11.21□□□□□ -0.61
CXXC4-202ENST00000466963 FANCD2Q9BXW9 1451 aa11.21□□□□□ -0.62
CXXC4-202ENST00000466963 IFT140Q96RY7 1462 aa11.2□□□□□ -0.62
CXXC4-202ENST00000466963 RSF1Q96T23 1441 aaPredicted RBP11.16□□□□□ -0.62
CXXC4-202ENST00000466963 TOP2AP11388 1531 aaKnown RBP11.15□□□□□ -0.62
CXXC4-202ENST00000466963 RIMBP3CA6NJZ7 1639 aa11.13□□□□□ -0.63
CXXC4-202ENST00000466963 RIMBP3BA6NNM3 1639 aa11.13□□□□□ -0.63
CXXC4-202ENST00000466963 RIMBP3Q9UFD9 1639 aa11.13□□□□□ -0.63
CXXC4-202ENST00000466963 TRIM41Q8WV44 630 aa11.12□□□□□ -0.63
CXXC4-202ENST00000466963 URB2Q14146 1524 aaKnown RBP11.07□□□□□ -0.64
CXXC4-202ENST00000466963 ARHGEF11O15085 1522 aa11.06□□□□□ -0.64
CXXC4-202ENST00000466963 DNMBPQ6XZF7 1577 aa11.04□□□□□ -0.64
CXXC4-202ENST00000466963 WIZO95785 1651 aa11.03□□□□□ -0.64
CXXC4-202ENST00000466963 TOPBP1Q92547 1522 aa10.98□□□□□ -0.65
CXXC4-202ENST00000466963 EIF4G3O43432 1585 aaKnown RBP10.97□□□□□ -0.65
CXXC4-202ENST00000466963 SYNJ1O43426 1573 aa10.95□□□□□ -0.66
CXXC4-202ENST00000466963 MAGI1Q96QZ7 1491 aaPredicted RBP10.95□□□□□ -0.66
CXXC4-202ENST00000466963 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
CXXC4-202ENST00000466963 CLASP1Q7Z460 1538 aa10.92□□□□□ -0.66
CXXC4-202ENST00000466963 CHD1O14646 1710 aa10.91□□□□□ -0.66
CXXC4-202ENST00000466963 ARAP1Q96P48 1450 aa10.89□□□□□ -0.67
CXXC4-202ENST00000466963 ZNF608Q9ULD9 1512 aaPredicted RBP10.84□□□□□ -0.67
CXXC4-202ENST00000466963 CCDC88BA6NC98 1476 aa10.83□□□□□ -0.68
CXXC4-202ENST00000466963 GRIN2BQ13224 1484 aa10.83□□□□□ -0.68
CXXC4-202ENST00000466963 SYNJ2O15056 1496 aa10.82□□□□□ -0.68
CXXC4-202ENST00000466963 POLA1P09884 1462 aaPredicted RBP10.8□□□□□ -0.68
CXXC4-202ENST00000466963 SOGA1O94964 1423 aa10.75□□□□□ -0.69
CXXC4-202ENST00000466963 CYB5RLQ6IPT4 315 aa10.73□□□□□ -0.69
CXXC4-202ENST00000466963 SNAPC4Q5SXM2 1469 aa10.73□□□□□ -0.69
CXXC4-202ENST00000466963 PBRM1Q86U86 1689 aa10.72□□□□□ -0.69
CXXC4-202ENST00000466963 SHROOM2Q13796 1616 aa10.71□□□□□ -0.69
CXXC4-202ENST00000466963 TRHP20396 242 aaPredicted RBP10.71□□□□□ -0.69
CXXC4-202ENST00000466963 ABCA10Q8WWZ4 1543 aa10.71□□□□□ -0.69
CXXC4-202ENST00000466963 AQRO60306 1485 aaKnown RBP eCLIP10.7□□□□□ -0.7
CXXC4-202ENST00000466963 GAPVD1Q14C86 1478 aa10.7□□□□□ -0.7
CXXC4-202ENST00000466963 ABCA5Q8WWZ7 1642 aa10.7□□□□□ -0.7
CXXC4-202ENST00000466963 FGD5Q6ZNL6 1462 aa10.67□□□□□ -0.7
CXXC4-202ENST00000466963 NUP160Q12769 1436 aa10.67□□□□□ -0.7
CXXC4-202ENST00000466963 CHMP7Q8WUX9 453 aaPredicted RBP10.67□□□□□ -0.7
CXXC4-202ENST00000466963 ERICH3Q5RHP9 1530 aa10.65□□□□□ -0.7
CXXC4-202ENST00000466963 MAPKBP1O60336 1514 aa10.64□□□□□ -0.71
CXXC4-202ENST00000466963 ADAMTS12P58397 1594 aa10.62□□□□□ -0.71
CXXC4-202ENST00000466963 GRIN2AQ12879 1464 aa10.62□□□□□ -0.71
CXXC4-202ENST00000466963 FHAD1B1AJZ9 1412 aa10.62□□□□□ -0.71
CXXC4-202ENST00000466963 CUX1P39880 1505 aa10.61□□□□□ -0.71
CXXC4-202ENST00000466963 CEP170Q5SW79 1584 aa10.59□□□□□ -0.71
CXXC4-202ENST00000466963 RAD54L2Q9Y4B4 1467 aa10.58□□□□□ -0.72
CXXC4-202ENST00000466963 BIVM-ERCC5R4GMW8 1640 aa10.58□□□□□ -0.72
CXXC4-202ENST00000466963 WRNQ14191 1432 aaPredicted RBP eCLIP10.57□□□□□ -0.72
CXXC4-202ENST00000466963 TDRD9Q8NDG6 1382 aaKnown RBP10.56□□□□□ -0.72
CXXC4-202ENST00000466963 ABCC10Q5T3U5 1492 aa10.56□□□□□ -0.72
CXXC4-202ENST00000466963 KIF13AQ9H1H9 1805 aa10.56□□□□□ -0.72
CXXC4-202ENST00000466963 FBLN2P98095 1184 aa10.55□□□□□ -0.72
CXXC4-202ENST00000466963 TOP2BQ02880 1626 aa10.53□□□□□ -0.72
CXXC4-202ENST00000466963 GLI2P10070 1586 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms