RNA–Protein interactions for RNA: ENST00000466379.1

UBE4B-206, Transcript of ubiquitination factor E4B, humanhuman

TSL 2

Gene UBE4B, Length 2,299 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-206ENST00000466379 NISCHQ9Y2I1 1504 aa29.87■■■□□ 2.37
UBE4B-206ENST00000466379 CCDC180Q9P1Z9 1646 aa25.78■■□□□ 1.72
UBE4B-206ENST00000466379 ZCCHC6Q5VYS8 1495 aaKnown RBP25.15■■□□□ 1.62
UBE4B-206ENST00000466379 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
UBE4B-206ENST00000466379 DCAF8L2P0C7V8 631 aa24.81■■□□□ 1.56
UBE4B-206ENST00000466379 DCAF1Q9Y4B6 1507 aa24.55■■□□□ 1.52
UBE4B-206ENST00000466379 ABCC9O60706 1549 aa24.33■■□□□ 1.49
UBE4B-206ENST00000466379 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
UBE4B-206ENST00000466379 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
UBE4B-206ENST00000466379 SCRIBQ14160 1630 aa23.98■■□□□ 1.43
UBE4B-206ENST00000466379 NACADO15069 1562 aa23.95■■□□□ 1.42
UBE4B-206ENST00000466379 RB1CC1Q8TDY2 1594 aa23.7■■□□□ 1.38
UBE4B-206ENST00000466379 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
UBE4B-206ENST00000466379 UNC13AQ9UPW8 1703 aa23.35■■□□□ 1.33
UBE4B-206ENST00000466379 CECR2Q9BXF3 1484 aa23.3■■□□□ 1.32
UBE4B-206ENST00000466379 MROH2BQ7Z745 1585 aa23.17■■□□□ 1.3
UBE4B-206ENST00000466379 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
UBE4B-206ENST00000466379 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
UBE4B-206ENST00000466379 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
UBE4B-206ENST00000466379 WIZO95785 1651 aa23.03■■□□□ 1.28
UBE4B-206ENST00000466379 BAZ1AQ9NRL2 1556 aaPredicted RBP23■■□□□ 1.27
UBE4B-206ENST00000466379 SMARCA4P51532 1647 aa22.91■■□□□ 1.26
UBE4B-206ENST00000466379 TOP2AP11388 1531 aaKnown RBP22.69■■□□□ 1.22
UBE4B-206ENST00000466379 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
UBE4B-206ENST00000466379 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
UBE4B-206ENST00000466379 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
UBE4B-206ENST00000466379 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
UBE4B-206ENST00000466379 EIF4G1Q04637 1599 aaKnown RBP22.47■■□□□ 1.19
UBE4B-206ENST00000466379 ATAD2BQ9ULI0 1458 aa22.44■■□□□ 1.18
UBE4B-206ENST00000466379 LOC105371045A0A1W2PR82 267 aa22.37■■□□□ 1.17
UBE4B-206ENST00000466379 BAZ1BQ9UIG0 1483 aaKnown RBP22.35■■□□□ 1.17
UBE4B-206ENST00000466379 FAM9AQ8IZU1 332 aaPredicted RBP22.26■■□□□ 1.15
UBE4B-206ENST00000466379 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
UBE4B-206ENST00000466379 NCAPD3P42695 1498 aa22.13■■□□□ 1.13
UBE4B-206ENST00000466379 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
UBE4B-206ENST00000466379 EHMT2Q96KQ7 1210 aa22.06■■□□□ 1.12
UBE4B-206ENST00000466379 WRNQ14191 1432 aaPredicted RBP eCLIP21.96■■□□□ 1.11
UBE4B-206ENST00000466379 CC2D2AQ9P2K1 1620 aa21.95■■□□□ 1.1
UBE4B-206ENST00000466379 SYNJ1O43426 1573 aa21.9■■□□□ 1.1
UBE4B-206ENST00000466379 SOGA1O94964 1423 aa21.89■■□□□ 1.09
UBE4B-206ENST00000466379 RUSC2Q8N2Y8 1516 aa21.83■■□□□ 1.08
UBE4B-206ENST00000466379 CFTRP13569 1480 aa21.77■■□□□ 1.07
UBE4B-206ENST00000466379 TOP2BQ02880 1626 aa21.7■■□□□ 1.06
UBE4B-206ENST00000466379 EEA1Q15075 1411 aa21.7■■□□□ 1.06
UBE4B-206ENST00000466379 PCGF6Q9BYE7 350 aa21.69■■□□□ 1.06
UBE4B-206ENST00000466379 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
UBE4B-206ENST00000466379 BIVM-ERCC5R4GMW8 1640 aa21.67■■□□□ 1.06
UBE4B-206ENST00000466379 PRDM2Q13029 1718 aa21.64■■□□□ 1.06
UBE4B-206ENST00000466379 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
UBE4B-206ENST00000466379 CUX1P39880 1505 aa21.63■■□□□ 1.05
UBE4B-206ENST00000466379 GOLGA3Q08378 1498 aa21.52■■□□□ 1.04
UBE4B-206ENST00000466379 UBTFP17480 764 aaKnown RBP21.52■■□□□ 1.03
UBE4B-206ENST00000466379 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
UBE4B-206ENST00000466379 CEP162Q5TB80 1403 aa21.48■■□□□ 1.03
UBE4B-206ENST00000466379 DNAJC5BQ9UF47 199 aa21.48■■□□□ 1.03
UBE4B-206ENST00000466379 NESP48681 1621 aa21.48■■□□□ 1.03
UBE4B-206ENST00000466379 KIF21BO75037 1637 aa21.47■■□□□ 1.03
UBE4B-206ENST00000466379 CEP164Q9UPV0 1460 aa21.47■■□□□ 1.03
UBE4B-206ENST00000466379 TRIM26Q12899 539 aaPredicted RBP21.46■■□□□ 1.03
UBE4B-206ENST00000466379 FANCD2Q9BXW9 1451 aa21.44■■□□□ 1.02
UBE4B-206ENST00000466379 RAPGEF2Q9Y4G8 1499 aa21.4■■□□□ 1.02
UBE4B-206ENST00000466379 PPARGC1BQ86YN6 1023 aaKnown RBP21.4■■□□□ 1.02
UBE4B-206ENST00000466379 KIF27Q86VH2 1401 aa21.34■■□□□ 1.01
UBE4B-206ENST00000466379 FGD5Q6ZNL6 1462 aa21.34■■□□□ 1.01
UBE4B-206ENST00000466379 LAMC3Q9Y6N6 1575 aa21.32■■□□□ 1
UBE4B-206ENST00000466379 PRXQ9BXM0 1461 aa21.28■■□□□ 1
UBE4B-206ENST00000466379 CUX2O14529 1486 aa21.28■■□□□ 1
UBE4B-206ENST00000466379 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
UBE4B-206ENST00000466379 HRCP23327 699 aa21.25■□□□□ 0.99
UBE4B-206ENST00000466379 RANGAP1P46060 587 aaPredicted RBP21.24■□□□□ 0.99
UBE4B-206ENST00000466379 TOPBP1Q92547 1522 aa21.24■□□□□ 0.99
UBE4B-206ENST00000466379 ERICH3Q5RHP9 1530 aa21.24■□□□□ 0.99
UBE4B-206ENST00000466379 CLIP1P30622 1438 aa21.23■□□□□ 0.99
UBE4B-206ENST00000466379 RAD54L2Q9Y4B4 1467 aa21.18■□□□□ 0.98
UBE4B-206ENST00000466379 TTBK1Q5TCY1 1321 aaPredicted RBP21.18■□□□□ 0.98
UBE4B-206ENST00000466379 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
UBE4B-206ENST00000466379 URB2Q14146 1524 aaKnown RBP21.17■□□□□ 0.98
UBE4B-206ENST00000466379 KIF21AQ7Z4S6 1674 aa21.17■□□□□ 0.98
UBE4B-206ENST00000466379 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
UBE4B-206ENST00000466379 IGF1RP08069 1367 aa21.15■□□□□ 0.98
UBE4B-206ENST00000466379 ABCA10Q8WWZ4 1543 aa21.08■□□□□ 0.97
UBE4B-206ENST00000466379 VPS8Q8N3P4 1428 aa21.06■□□□□ 0.96
UBE4B-206ENST00000466379 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
UBE4B-206ENST00000466379 WDR97A6NE52 1622 aa21.01■□□□□ 0.95
UBE4B-206ENST00000466379 ARAP1Q96P48 1450 aa20.99■□□□□ 0.95
UBE4B-206ENST00000466379 TDRD9Q8NDG6 1382 aaKnown RBP20.95■□□□□ 0.94
UBE4B-206ENST00000466379 ARHGAP35Q9NRY4 1499 aa20.92■□□□□ 0.94
UBE4B-206ENST00000466379 ABCA5Q8WWZ7 1642 aa20.91■□□□□ 0.94
UBE4B-206ENST00000466379 MRC2Q9UBG0 1479 aa20.9■□□□□ 0.94
UBE4B-206ENST00000466379 CUL7Q14999 1698 aa20.88■□□□□ 0.93
UBE4B-206ENST00000466379 APLP2Q06481 763 aa20.88■□□□□ 0.93
UBE4B-206ENST00000466379 TARBP1Q13395 1621 aaKnown RBP20.88■□□□□ 0.93
UBE4B-206ENST00000466379 GAPVD1Q14C86 1478 aa20.87■□□□□ 0.93
UBE4B-206ENST00000466379 ERCC6Q03468 1493 aa20.76■□□□□ 0.91
UBE4B-206ENST00000466379 WDR62O43379 1518 aa20.76■□□□□ 0.91
UBE4B-206ENST00000466379 CTTNBP2Q8WZ74 1663 aa20.75■□□□□ 0.91
UBE4B-206ENST00000466379 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.91
UBE4B-206ENST00000466379 P3H3Q8IVL6 736 aa20.75■□□□□ 0.91
UBE4B-206ENST00000466379 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
UBE4B-206ENST00000466379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms