RNA–Protein interactions for RNA: ENST00000466348.5

PDZRN3-204, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 3

Gene PDZRN3, Length 645 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-204ENST00000466348 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
PDZRN3-204ENST00000466348 CCDC180Q9P1Z9 1646 aa20.93■□□□□ 0.94
PDZRN3-204ENST00000466348 ZCCHC6Q5VYS8 1495 aaKnown RBP20.19■□□□□ 0.82
PDZRN3-204ENST00000466348 DCAF1Q9Y4B6 1507 aa19.98■□□□□ 0.79
PDZRN3-204ENST00000466348 MYO15BQ96JP2 1530 aa19.74■□□□□ 0.75
PDZRN3-204ENST00000466348 DCAF8L2P0C7V8 631 aa19.69■□□□□ 0.74
PDZRN3-204ENST00000466348 ABCC9O60706 1549 aa19.52■□□□□ 0.72
PDZRN3-204ENST00000466348 NACADO15069 1562 aa19.5■□□□□ 0.71
PDZRN3-204ENST00000466348 SHROOM4Q9ULL8 1493 aa19.48■□□□□ 0.71
PDZRN3-204ENST00000466348 RB1CC1Q8TDY2 1594 aa19.27■□□□□ 0.67
PDZRN3-204ENST00000466348 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
PDZRN3-204ENST00000466348 SUPT5HO00267 1087 aaKnown RBP18.89■□□□□ 0.61
PDZRN3-204ENST00000466348 UNC13AQ9UPW8 1703 aa18.73■□□□□ 0.59
PDZRN3-204ENST00000466348 RSF1Q96T23 1441 aaPredicted RBP18.66■□□□□ 0.58
PDZRN3-204ENST00000466348 BICRAQ9NZM4 1560 aa18.59■□□□□ 0.57
PDZRN3-204ENST00000466348 BAZ1AQ9NRL2 1556 aaPredicted RBP18.57■□□□□ 0.56
PDZRN3-204ENST00000466348 CECR2Q9BXF3 1484 aa18.55■□□□□ 0.56
PDZRN3-204ENST00000466348 MROH2BQ7Z745 1585 aa18.49■□□□□ 0.55
PDZRN3-204ENST00000466348 PABPN1Q86U42 306 aaKnown RBP eCLIP18.43■□□□□ 0.54
PDZRN3-204ENST00000466348 SMARCA4P51532 1647 aa18.4■□□□□ 0.54
PDZRN3-204ENST00000466348 WIZO95785 1651 aa18.31■□□□□ 0.52
PDZRN3-204ENST00000466348 PEG3Q9GZU2 1588 aa18.26■□□□□ 0.51
PDZRN3-204ENST00000466348 CHIC1Q5VXU3 224 aa18.23■□□□□ 0.51
PDZRN3-204ENST00000466348 TOP2AP11388 1531 aaKnown RBP18.22■□□□□ 0.51
PDZRN3-204ENST00000466348 SMARCA2P51531 1590 aa18.15■□□□□ 0.5
PDZRN3-204ENST00000466348 ATAD2BQ9ULI0 1458 aa18.1■□□□□ 0.49
PDZRN3-204ENST00000466348 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
PDZRN3-204ENST00000466348 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
PDZRN3-204ENST00000466348 NCAPD3P42695 1498 aa18■□□□□ 0.47
PDZRN3-204ENST00000466348 BAZ1BQ9UIG0 1483 aaKnown RBP18■□□□□ 0.47
PDZRN3-204ENST00000466348 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
PDZRN3-204ENST00000466348 TRIM41Q8WV44 630 aa17.86■□□□□ 0.45
PDZRN3-204ENST00000466348 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
PDZRN3-204ENST00000466348 CFTRP13569 1480 aa17.6■□□□□ 0.41
PDZRN3-204ENST00000466348 WRNQ14191 1432 aaPredicted RBP eCLIP17.59■□□□□ 0.41
PDZRN3-204ENST00000466348 ABCC8Q09428 1581 aa17.57■□□□□ 0.4
PDZRN3-204ENST00000466348 CADPSQ9ULU8 1353 aa17.53■□□□□ 0.4
PDZRN3-204ENST00000466348 EEA1Q15075 1411 aa17.52■□□□□ 0.4
PDZRN3-204ENST00000466348 PRDM2Q13029 1718 aa17.46■□□□□ 0.39
PDZRN3-204ENST00000466348 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
PDZRN3-204ENST00000466348 TOP2BQ02880 1626 aa17.42■□□□□ 0.38
PDZRN3-204ENST00000466348 SYNJ1O43426 1573 aa17.4■□□□□ 0.38
PDZRN3-204ENST00000466348 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
PDZRN3-204ENST00000466348 FAM9AQ8IZU1 332 aaPredicted RBP17.38■□□□□ 0.37
PDZRN3-204ENST00000466348 CSRNP3Q8WYN3 585 aa17.34■□□□□ 0.37
PDZRN3-204ENST00000466348 LAMC3Q9Y6N6 1575 aa17.34■□□□□ 0.37
PDZRN3-204ENST00000466348 SOGA1O94964 1423 aa17.31■□□□□ 0.36
PDZRN3-204ENST00000466348 CUX1P39880 1505 aa17.29■□□□□ 0.36
PDZRN3-204ENST00000466348 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.36
PDZRN3-204ENST00000466348 PDS5BQ9NTI5 1447 aa17.23■□□□□ 0.35
PDZRN3-204ENST00000466348 RUSC2Q8N2Y8 1516 aa17.2■□□□□ 0.34
PDZRN3-204ENST00000466348 CEP164Q9UPV0 1460 aa17.18■□□□□ 0.34
PDZRN3-204ENST00000466348 TNIKQ9UKE5 1360 aa17.18■□□□□ 0.34
PDZRN3-204ENST00000466348 GOLGA3Q08378 1498 aa17.18■□□□□ 0.34
PDZRN3-204ENST00000466348 KIF27Q86VH2 1401 aa17.17■□□□□ 0.34
PDZRN3-204ENST00000466348 KIF21BO75037 1637 aa17.17■□□□□ 0.34
PDZRN3-204ENST00000466348 NESP48681 1621 aa17.16■□□□□ 0.34
PDZRN3-204ENST00000466348 DNMBPQ6XZF7 1577 aa17.15■□□□□ 0.34
PDZRN3-204ENST00000466348 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
PDZRN3-204ENST00000466348 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
PDZRN3-204ENST00000466348 TOPBP1Q92547 1522 aa17.09■□□□□ 0.33
PDZRN3-204ENST00000466348 ERICH3Q5RHP9 1530 aa17.07■□□□□ 0.32
PDZRN3-204ENST00000466348 UBTFP17480 764 aaKnown RBP17.07■□□□□ 0.32
PDZRN3-204ENST00000466348 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
PDZRN3-204ENST00000466348 ABCA10Q8WWZ4 1543 aa17.01■□□□□ 0.31
PDZRN3-204ENST00000466348 CUX2O14529 1486 aa17.01■□□□□ 0.31
PDZRN3-204ENST00000466348 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
PDZRN3-204ENST00000466348 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
PDZRN3-204ENST00000466348 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
PDZRN3-204ENST00000466348 POLA1P09884 1462 aaPredicted RBP17■□□□□ 0.31
PDZRN3-204ENST00000466348 IGF1RP08069 1367 aa16.98■□□□□ 0.31
PDZRN3-204ENST00000466348 RAPGEF2Q9Y4G8 1499 aa16.97■□□□□ 0.31
PDZRN3-204ENST00000466348 KIF21AQ7Z4S6 1674 aa16.96■□□□□ 0.31
PDZRN3-204ENST00000466348 MRC2Q9UBG0 1479 aa16.94■□□□□ 0.3
PDZRN3-204ENST00000466348 TRIM26Q12899 539 aaPredicted RBP16.91■□□□□ 0.3
PDZRN3-204ENST00000466348 CARMIL1Q5VZK9 1371 aa16.9■□□□□ 0.3
PDZRN3-204ENST00000466348 RAD54L2Q9Y4B4 1467 aa16.9■□□□□ 0.3
PDZRN3-204ENST00000466348 CLIP1P30622 1438 aa16.87■□□□□ 0.29
PDZRN3-204ENST00000466348 WDR97A6NE52 1622 aa16.86■□□□□ 0.29
PDZRN3-204ENST00000466348 WDR62O43379 1518 aa16.84■□□□□ 0.29
PDZRN3-204ENST00000466348 CUL7Q14999 1698 aa16.84■□□□□ 0.29
PDZRN3-204ENST00000466348 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
PDZRN3-204ENST00000466348 ABCA5Q8WWZ7 1642 aa16.81■□□□□ 0.28
PDZRN3-204ENST00000466348 GAPVD1Q14C86 1478 aa16.8■□□□□ 0.28
PDZRN3-204ENST00000466348 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
PDZRN3-204ENST00000466348 IFT140Q96RY7 1462 aa16.8■□□□□ 0.28
PDZRN3-204ENST00000466348 PCGF6Q9BYE7 350 aa16.79■□□□□ 0.28
PDZRN3-204ENST00000466348 VPS8Q8N3P4 1428 aa16.78■□□□□ 0.28
PDZRN3-204ENST00000466348 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
PDZRN3-204ENST00000466348 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
PDZRN3-204ENST00000466348 GRIN2BQ13224 1484 aa16.68■□□□□ 0.26
PDZRN3-204ENST00000466348 APLP2Q06481 763 aa16.68■□□□□ 0.26
PDZRN3-204ENST00000466348 FHAD1B1AJZ9 1412 aa16.67■□□□□ 0.26
PDZRN3-204ENST00000466348 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
PDZRN3-204ENST00000466348 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
PDZRN3-204ENST00000466348 EFCAB5A4FU69 1503 aa16.62■□□□□ 0.25
PDZRN3-204ENST00000466348 PBRM1Q86U86 1689 aa16.62■□□□□ 0.25
PDZRN3-204ENST00000466348 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.25
PDZRN3-204ENST00000466348 CTTNBP2Q8WZ74 1663 aa16.6■□□□□ 0.25
PDZRN3-204ENST00000466348 RANGAP1P46060 587 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms