RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
SQSTM1-206ENST00000466342 ABCC9O60706 1549 aa27.8■■■□□ 2.04
SQSTM1-206ENST00000466342 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.94
SQSTM1-206ENST00000466342 DNAJC5BQ9UF47 199 aa26.77■■□□□ 1.88
SQSTM1-206ENST00000466342 RB1CC1Q8TDY2 1594 aa26.17■■□□□ 1.78
SQSTM1-206ENST00000466342 NACADO15069 1562 aa25.82■■□□□ 1.72
SQSTM1-206ENST00000466342 PABPN1Q86U42 306 aaKnown RBP eCLIP25.77■■□□□ 1.72
SQSTM1-206ENST00000466342 UNC13AQ9UPW8 1703 aa25.66■■□□□ 1.7
SQSTM1-206ENST00000466342 DCAF8L2P0C7V8 631 aa25.54■■□□□ 1.68
SQSTM1-206ENST00000466342 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
SQSTM1-206ENST00000466342 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
SQSTM1-206ENST00000466342 DNAJC5Q9H3Z4 198 aa25.14■■□□□ 1.62
SQSTM1-206ENST00000466342 CECR2Q9BXF3 1484 aa25.13■■□□□ 1.61
SQSTM1-206ENST00000466342 CC2D2AQ9P2K1 1620 aa25.11■■□□□ 1.61
SQSTM1-206ENST00000466342 SHROOM4Q9ULL8 1493 aa25■■□□□ 1.59
SQSTM1-206ENST00000466342 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-206ENST00000466342 DCAF1Q9Y4B6 1507 aa24.62■■□□□ 1.53
SQSTM1-206ENST00000466342 SCRIBQ14160 1630 aa24.62■■□□□ 1.53
SQSTM1-206ENST00000466342 ZCCHC6Q5VYS8 1495 aaKnown RBP24.55■■□□□ 1.52
SQSTM1-206ENST00000466342 CUX2O14529 1486 aa24.28■■□□□ 1.48
SQSTM1-206ENST00000466342 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
SQSTM1-206ENST00000466342 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
SQSTM1-206ENST00000466342 TRIM41Q8WV44 630 aa23.7■■□□□ 1.38
SQSTM1-206ENST00000466342 NESP48681 1621 aa23.68■■□□□ 1.38
SQSTM1-206ENST00000466342 ATAD2BQ9ULI0 1458 aa23.64■■□□□ 1.38
SQSTM1-206ENST00000466342 THOC2Q8NI27 1593 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-206ENST00000466342 HMGXB3Q12766 1538 aa23.58■■□□□ 1.36
SQSTM1-206ENST00000466342 SMARCA2P51531 1590 aa23.55■■□□□ 1.36
SQSTM1-206ENST00000466342 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
SQSTM1-206ENST00000466342 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
SQSTM1-206ENST00000466342 KIF21AQ7Z4S6 1674 aa23.4■■□□□ 1.34
SQSTM1-206ENST00000466342 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-206ENST00000466342 PDS5BQ9NTI5 1447 aa23.31■■□□□ 1.32
SQSTM1-206ENST00000466342 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
SQSTM1-206ENST00000466342 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
SQSTM1-206ENST00000466342 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
SQSTM1-206ENST00000466342 WDR62O43379 1518 aa23.09■■□□□ 1.29
SQSTM1-206ENST00000466342 OSCARQ8IYS5 282 aa23.09■■□□□ 1.29
SQSTM1-206ENST00000466342 CADPSQ9ULU8 1353 aa23.07■■□□□ 1.28
SQSTM1-206ENST00000466342 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
SQSTM1-206ENST00000466342 CEP164Q9UPV0 1460 aa22.89■■□□□ 1.25
SQSTM1-206ENST00000466342 RIMBP3CA6NJZ7 1639 aa22.85■■□□□ 1.25
SQSTM1-206ENST00000466342 RIMBP3BA6NNM3 1639 aa22.85■■□□□ 1.25
SQSTM1-206ENST00000466342 RIMBP3Q9UFD9 1639 aa22.85■■□□□ 1.25
SQSTM1-206ENST00000466342 FANCD2Q9BXW9 1451 aa22.79■■□□□ 1.24
SQSTM1-206ENST00000466342 WIZO95785 1651 aa22.7■■□□□ 1.22
SQSTM1-206ENST00000466342 ARHGEF11O15085 1522 aa22.67■■□□□ 1.22
SQSTM1-206ENST00000466342 URB2Q14146 1524 aaKnown RBP22.66■■□□□ 1.22
SQSTM1-206ENST00000466342 CFTRP13569 1480 aa22.65■■□□□ 1.22
SQSTM1-206ENST00000466342 CYB5RLQ6IPT4 315 aa22.59■■□□□ 1.21
SQSTM1-206ENST00000466342 TRHP20396 242 aaPredicted RBP22.58■■□□□ 1.21
SQSTM1-206ENST00000466342 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-206ENST00000466342 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
SQSTM1-206ENST00000466342 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
SQSTM1-206ENST00000466342 PRDM2Q13029 1718 aa22.44■■□□□ 1.18
SQSTM1-206ENST00000466342 ARAP1Q96P48 1450 aa22.39■■□□□ 1.17
SQSTM1-206ENST00000466342 CHD1O14646 1710 aa22.37■■□□□ 1.17
SQSTM1-206ENST00000466342 EIF4G3O43432 1585 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-206ENST00000466342 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-206ENST00000466342 TOPBP1Q92547 1522 aa22.29■■□□□ 1.16
SQSTM1-206ENST00000466342 RSF1Q96T23 1441 aaPredicted RBP22.29■■□□□ 1.16
SQSTM1-206ENST00000466342 FBLN2P98095 1184 aa22.23■■□□□ 1.15
SQSTM1-206ENST00000466342 ABCC8Q09428 1581 aa22.23■■□□□ 1.15
SQSTM1-206ENST00000466342 AQRO60306 1485 aaKnown RBP eCLIP22.22■■□□□ 1.153e-8■■■■■ 28.9
SQSTM1-206ENST00000466342 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-206ENST00000466342 DNMBPQ6XZF7 1577 aa22.15■■□□□ 1.14
SQSTM1-206ENST00000466342 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
SQSTM1-206ENST00000466342 CLASP1Q7Z460 1538 aa22.04■■□□□ 1.12
SQSTM1-206ENST00000466342 POLA1P09884 1462 aaPredicted RBP22.01■■□□□ 1.11
SQSTM1-206ENST00000466342 SYNJ1O43426 1573 aa21.97■■□□□ 1.11
SQSTM1-206ENST00000466342 CHMP7Q8WUX9 453 aaPredicted RBP21.96■■□□□ 1.11
SQSTM1-206ENST00000466342 TDRD9Q8NDG6 1382 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-206ENST00000466342 SNAPC4Q5SXM2 1469 aa21.94■■□□□ 1.1
SQSTM1-206ENST00000466342 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
SQSTM1-206ENST00000466342 SOGA1O94964 1423 aa21.91■■□□□ 1.1
SQSTM1-206ENST00000466342 WDR97A6NE52 1622 aa21.89■■□□□ 1.09
SQSTM1-206ENST00000466342 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
SQSTM1-206ENST00000466342 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
SQSTM1-206ENST00000466342 SYNJ2O15056 1496 aa21.81■■□□□ 1.08
SQSTM1-206ENST00000466342 GRIN2BQ13224 1484 aa21.8■■□□□ 1.08
SQSTM1-206ENST00000466342 FGD5Q6ZNL6 1462 aa21.76■■□□□ 1.07
SQSTM1-206ENST00000466342 PBRM1Q86U86 1689 aa21.7■■□□□ 1.06
SQSTM1-206ENST00000466342 KIF13AQ9H1H9 1805 aa21.67■■□□□ 1.06
SQSTM1-206ENST00000466342 ERCC6L2Q5T890 1561 aa21.64■■□□□ 1.05
SQSTM1-206ENST00000466342 CUX1P39880 1505 aa21.63■■□□□ 1.05
SQSTM1-206ENST00000466342 ILDR1Q86SU0 546 aaPredicted RBP21.57■■□□□ 1.04
SQSTM1-206ENST00000466342 CEP170Q5SW79 1584 aa21.55■■□□□ 1.04
SQSTM1-206ENST00000466342 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
SQSTM1-206ENST00000466342 GRIN2AQ12879 1464 aa21.51■■□□□ 1.03
SQSTM1-206ENST00000466342 SHROOM2Q13796 1616 aa21.48■■□□□ 1.03
SQSTM1-206ENST00000466342 ABCA10Q8WWZ4 1543 aa21.48■■□□□ 1.03
SQSTM1-206ENST00000466342 NUP160Q12769 1436 aa21.46■■□□□ 1.03
SQSTM1-206ENST00000466342 KDM4FA0A1W2PPD8 638 aa21.46■■□□□ 1.03
SQSTM1-206ENST00000466342 FAM69CQ0P6D2 419 aa21.41■■□□□ 1.02
SQSTM1-206ENST00000466342 ADAMTS12P58397 1594 aa21.39■■□□□ 1.01
SQSTM1-206ENST00000466342 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.01
SQSTM1-206ENST00000466342 KDM6BO15054 1643 aa21.33■■□□□ 1.01
SQSTM1-206ENST00000466342 PRG4Q92954 1404 aaPredicted RBP21.33■■□□□ 1.01
SQSTM1-206ENST00000466342 NPM1P06748 294 aaKnown RBP eCLIP21.33■■□□□ 1.01
SQSTM1-206ENST00000466342 FHAD1B1AJZ9 1412 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms