RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 NISCHQ9Y2I1 1504 aa31.68■■■□□ 2.66
COL5A1-206ENST00000465877 CCDC180Q9P1Z9 1646 aa28.36■■■□□ 2.13
COL5A1-206ENST00000465877 ABCC9O60706 1549 aa27.57■■■□□ 2
COL5A1-206ENST00000465877 RB1CC1Q8TDY2 1594 aa26.59■■□□□ 1.85
COL5A1-206ENST00000465877 NACADO15069 1562 aa26.54■■□□□ 1.84
COL5A1-206ENST00000465877 ZCCHC6Q5VYS8 1495 aaKnown RBP26.44■■□□□ 1.82
COL5A1-206ENST00000465877 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
COL5A1-206ENST00000465877 DCAF1Q9Y4B6 1507 aa26.24■■□□□ 1.79
COL5A1-206ENST00000465877 DCAF8L2P0C7V8 631 aa26.23■■□□□ 1.79
COL5A1-206ENST00000465877 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
COL5A1-206ENST00000465877 BICRAQ9NZM4 1560 aa25.8■■□□□ 1.72
COL5A1-206ENST00000465877 SCRIBQ14160 1630 aa25.8■■□□□ 1.72
COL5A1-206ENST00000465877 PABPN1Q86U42 306 aaKnown RBP eCLIP25.61■■□□□ 1.69
COL5A1-206ENST00000465877 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
COL5A1-206ENST00000465877 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
COL5A1-206ENST00000465877 EIF4G1Q04637 1599 aaKnown RBP25.12■■□□□ 1.61
COL5A1-206ENST00000465877 CC2D2AQ9P2K1 1620 aa25.02■■□□□ 1.6
COL5A1-206ENST00000465877 CECR2Q9BXF3 1484 aa24.77■■□□□ 1.56
COL5A1-206ENST00000465877 SMARCA4P51532 1647 aa24.68■■□□□ 1.54
COL5A1-206ENST00000465877 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
COL5A1-206ENST00000465877 SMARCA2P51531 1590 aa24.47■■□□□ 1.51
COL5A1-206ENST00000465877 ATAD2BQ9ULI0 1458 aa24.44■■□□□ 1.5
COL5A1-206ENST00000465877 PEG3Q9GZU2 1588 aa24.42■■□□□ 1.5
COL5A1-206ENST00000465877 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
COL5A1-206ENST00000465877 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
COL5A1-206ENST00000465877 NCAPD3P42695 1498 aa24.39■■□□□ 1.5
COL5A1-206ENST00000465877 BAZ1BQ9UIG0 1483 aaKnown RBP24.26■■□□□ 1.47
COL5A1-206ENST00000465877 WIZO95785 1651 aa24.22■■□□□ 1.47
COL5A1-206ENST00000465877 RSF1Q96T23 1441 aaPredicted RBP24.05■■□□□ 1.44
COL5A1-206ENST00000465877 TOP2AP11388 1531 aaKnown RBP23.95■■□□□ 1.43
COL5A1-206ENST00000465877 LAMC3Q9Y6N6 1575 aa23.87■■□□□ 1.41
COL5A1-206ENST00000465877 NESP48681 1621 aa23.86■■□□□ 1.41
COL5A1-206ENST00000465877 ERCC6Q03468 1493 aa23.77■■□□□ 1.4
COL5A1-206ENST00000465877 KIF21AQ7Z4S6 1674 aa23.76■■□□□ 1.39
COL5A1-206ENST00000465877 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
COL5A1-206ENST00000465877 THOC2Q8NI27 1593 aaKnown RBP23.66■■□□□ 1.38
COL5A1-206ENST00000465877 CADPSQ9ULU8 1353 aa23.65■■□□□ 1.38
COL5A1-206ENST00000465877 PDS5BQ9NTI5 1447 aa23.59■■□□□ 1.37
COL5A1-206ENST00000465877 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
COL5A1-206ENST00000465877 CUX2O14529 1486 aa23.56■■□□□ 1.36
COL5A1-206ENST00000465877 CFTRP13569 1480 aa23.56■■□□□ 1.36
COL5A1-206ENST00000465877 CEP164Q9UPV0 1460 aa23.46■■□□□ 1.35
COL5A1-206ENST00000465877 FANCD2Q9BXW9 1451 aa23.45■■□□□ 1.34
COL5A1-206ENST00000465877 MRC2Q9UBG0 1479 aa23.43■■□□□ 1.34
COL5A1-206ENST00000465877 WDR62O43379 1518 aa23.41■■□□□ 1.34
COL5A1-206ENST00000465877 SUPT5HO00267 1087 aaKnown RBP23.3■■□□□ 1.32
COL5A1-206ENST00000465877 URB2Q14146 1524 aaKnown RBP23.24■■□□□ 1.31
COL5A1-206ENST00000465877 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
COL5A1-206ENST00000465877 TOPBP1Q92547 1522 aa23.1■■□□□ 1.29
COL5A1-206ENST00000465877 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
COL5A1-206ENST00000465877 IFT140Q96RY7 1462 aa22.93■■□□□ 1.26
COL5A1-206ENST00000465877 CUX1P39880 1505 aa22.92■■□□□ 1.26
COL5A1-206ENST00000465877 TARBP1Q13395 1621 aaKnown RBP22.92■■□□□ 1.26
COL5A1-206ENST00000465877 POLA1P09884 1462 aaPredicted RBP22.91■■□□□ 1.26
COL5A1-206ENST00000465877 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.26
COL5A1-206ENST00000465877 FGD5Q6ZNL6 1462 aa22.85■■□□□ 1.25
COL5A1-206ENST00000465877 WDR97A6NE52 1622 aa22.84■■□□□ 1.25
COL5A1-206ENST00000465877 ZNF608Q9ULD9 1512 aaPredicted RBP22.83■■□□□ 1.25
COL5A1-206ENST00000465877 BIVM-ERCC5R4GMW8 1640 aa22.82■■□□□ 1.24
COL5A1-206ENST00000465877 SYNJ1O43426 1573 aa22.76■■□□□ 1.23
COL5A1-206ENST00000465877 TOP2BQ02880 1626 aa22.76■■□□□ 1.23
COL5A1-206ENST00000465877 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
COL5A1-206ENST00000465877 WRNQ14191 1432 aaPredicted RBP eCLIP22.71■■□□□ 1.23
COL5A1-206ENST00000465877 DNAJC5Q9H3Z4 198 aa22.7■■□□□ 1.22
COL5A1-206ENST00000465877 SOGA1O94964 1423 aa22.7■■□□□ 1.22
COL5A1-206ENST00000465877 PBRM1Q86U86 1689 aa22.68■■□□□ 1.22
COL5A1-206ENST00000465877 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.22
COL5A1-206ENST00000465877 ABCA5Q8WWZ7 1642 aa22.64■■□□□ 1.22
COL5A1-206ENST00000465877 CHD1O14646 1710 aa22.64■■□□□ 1.21
COL5A1-206ENST00000465877 ABCA10Q8WWZ4 1543 aa22.62■■□□□ 1.21
COL5A1-206ENST00000465877 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
COL5A1-206ENST00000465877 SNAPC4Q5SXM2 1469 aa22.53■■□□□ 1.2
COL5A1-206ENST00000465877 GRIN2BQ13224 1484 aa22.51■■□□□ 1.19
COL5A1-206ENST00000465877 GAPVD1Q14C86 1478 aa22.5■■□□□ 1.19
COL5A1-206ENST00000465877 MAGI1Q96QZ7 1491 aaPredicted RBP22.49■■□□□ 1.19
COL5A1-206ENST00000465877 ADAMTS12P58397 1594 aa22.42■■□□□ 1.18
COL5A1-206ENST00000465877 SYNJ2O15056 1496 aa22.39■■□□□ 1.17
COL5A1-206ENST00000465877 OSCARQ8IYS5 282 aa22.37■■□□□ 1.17
COL5A1-206ENST00000465877 ERICH3Q5RHP9 1530 aa22.36■■□□□ 1.17
COL5A1-206ENST00000465877 CLASP1Q7Z460 1538 aa22.31■■□□□ 1.16
COL5A1-206ENST00000465877 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
COL5A1-206ENST00000465877 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
COL5A1-206ENST00000465877 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
COL5A1-206ENST00000465877 FBLN2P98095 1184 aa22.28■■□□□ 1.16
COL5A1-206ENST00000465877 GRIN2AQ12879 1464 aa22.26■■□□□ 1.15
COL5A1-206ENST00000465877 CUL7Q14999 1698 aa22.25■■□□□ 1.15
COL5A1-206ENST00000465877 ARHGEF11O15085 1522 aa22.23■■□□□ 1.15
COL5A1-206ENST00000465877 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
COL5A1-206ENST00000465877 CHMP7Q8WUX9 453 aaPredicted RBP22.22■■□□□ 1.15
COL5A1-206ENST00000465877 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
COL5A1-206ENST00000465877 CEP170Q5SW79 1584 aa22.21■■□□□ 1.15
COL5A1-206ENST00000465877 NUP160Q12769 1436 aa22.14■■□□□ 1.13
COL5A1-206ENST00000465877 RUSC2Q8N2Y8 1516 aa22.11■■□□□ 1.13
COL5A1-206ENST00000465877 SHROOM2Q13796 1616 aa22.09■■□□□ 1.13
COL5A1-206ENST00000465877 IGF1RP08069 1367 aa22.05■■□□□ 1.12
COL5A1-206ENST00000465877 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
COL5A1-206ENST00000465877 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
COL5A1-206ENST00000465877 ERCC6L2Q5T890 1561 aa21.97■■□□□ 1.11
COL5A1-206ENST00000465877 CARMIL1Q5VZK9 1371 aa21.94■■□□□ 1.1
COL5A1-206ENST00000465877 CTTNBP2Q8WZ74 1663 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms