RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 NISCHQ9Y2I1 1504 aa36.63■■■■□ 3.45
SMC1A-204ENST00000463684 ABCC9O60706 1549 aa33.47■■■□□ 2.95
SMC1A-204ENST00000463684 CCDC180Q9P1Z9 1646 aa32.96■■■□□ 2.87
SMC1A-204ENST00000463684 DNAJC5BQ9UF47 199 aa31.77■■■□□ 2.68
SMC1A-204ENST00000463684 RB1CC1Q8TDY2 1594 aa31.65■■■□□ 2.66
SMC1A-204ENST00000463684 NACADO15069 1562 aa31.34■■■□□ 2.61
SMC1A-204ENST00000463684 DCAF8L2P0C7V8 631 aa31.28■■■□□ 2.6
SMC1A-204ENST00000463684 PABPN1Q86U42 306 aaKnown RBP eCLIP31.16■■■□□ 2.58
SMC1A-204ENST00000463684 UNC13AQ9UPW8 1703 aa30.78■■■□□ 2.52
SMC1A-204ENST00000463684 MYO15BQ96JP2 1530 aa30.76■■■□□ 2.51
SMC1A-204ENST00000463684 BICRAQ9NZM4 1560 aa30.68■■■□□ 2.5
SMC1A-204ENST00000463684 SHROOM4Q9ULL8 1493 aa30.28■■■□□ 2.44
SMC1A-204ENST00000463684 ZCCHC6Q5VYS8 1495 aaKnown RBP30.24■■■□□ 2.43
SMC1A-204ENST00000463684 DCAF1Q9Y4B6 1507 aa30.22■■■□□ 2.43
SMC1A-204ENST00000463684 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
SMC1A-204ENST00000463684 CC2D2AQ9P2K1 1620 aa30.15■■■□□ 2.42
SMC1A-204ENST00000463684 SCRIBQ14160 1630 aa30.05■■■□□ 2.4
SMC1A-204ENST00000463684 EIF4G1Q04637 1599 aaKnown RBP30■■■□□ 2.39
SMC1A-204ENST00000463684 DNAJC5Q9H3Z4 198 aa29.52■■■□□ 2.32
SMC1A-204ENST00000463684 CUX2O14529 1486 aa29.01■■■□□ 2.23
SMC1A-204ENST00000463684 NCAPD3P42695 1498 aa28.97■■■□□ 2.23
SMC1A-204ENST00000463684 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
SMC1A-204ENST00000463684 ATAD2BQ9ULI0 1458 aa28.8■■■□□ 2.2
SMC1A-204ENST00000463684 SMARCA2P51531 1590 aa28.7■■■□□ 2.18
SMC1A-204ENST00000463684 HMGXB3Q12766 1538 aa28.66■■■□□ 2.18
SMC1A-204ENST00000463684 SMARCA4P51532 1647 aa28.61■■■□□ 2.17
SMC1A-204ENST00000463684 NESP48681 1621 aa28.61■■■□□ 2.17
SMC1A-204ENST00000463684 BAZ1BQ9UIG0 1483 aaKnown RBP28.52■■■□□ 2.16
SMC1A-204ENST00000463684 BAZ1AQ9NRL2 1556 aaPredicted RBP28.46■■■□□ 2.15
SMC1A-204ENST00000463684 PEG3Q9GZU2 1588 aa28.34■■■□□ 2.13
SMC1A-204ENST00000463684 LAMC3Q9Y6N6 1575 aa28.34■■■□□ 2.13
SMC1A-204ENST00000463684 THOC2Q8NI27 1593 aaKnown RBP28.33■■■□□ 2.12
SMC1A-204ENST00000463684 PDS5BQ9NTI5 1447 aa28.27■■■□□ 2.12
SMC1A-204ENST00000463684 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.11
SMC1A-204ENST00000463684 KIF21AQ7Z4S6 1674 aa28.14■■■□□ 2.1
SMC1A-204ENST00000463684 TRIM41Q8WV44 630 aa28.1■■■□□ 2.09
SMC1A-204ENST00000463684 CADPSQ9ULU8 1353 aa28.1■■■□□ 2.09
SMC1A-204ENST00000463684 MRC2Q9UBG0 1479 aa28■■■□□ 2.07
SMC1A-204ENST00000463684 WDR62O43379 1518 aa27.89■■■□□ 2.06
SMC1A-204ENST00000463684 CEP164Q9UPV0 1460 aa27.82■■■□□ 2.04
SMC1A-204ENST00000463684 WIZO95785 1651 aa27.81■■■□□ 2.04
SMC1A-204ENST00000463684 FANCD2Q9BXW9 1451 aa27.76■■■□□ 2.03
SMC1A-204ENST00000463684 OSCARQ8IYS5 282 aa27.73■■■□□ 2.03
SMC1A-204ENST00000463684 CFTRP13569 1480 aa27.65■■■□□ 2.02
SMC1A-204ENST00000463684 RSF1Q96T23 1441 aaPredicted RBP27.51■■□□□ 1.99
SMC1A-204ENST00000463684 URB2Q14146 1524 aaKnown RBP27.51■■□□□ 1.99
SMC1A-204ENST00000463684 TOP2AP11388 1531 aaKnown RBP27.46■■□□□ 1.99
SMC1A-204ENST00000463684 IFT140Q96RY7 1462 aa27.28■■□□□ 1.96
SMC1A-204ENST00000463684 RIMBP3CA6NJZ7 1639 aa27.25■■□□□ 1.95
SMC1A-204ENST00000463684 RIMBP3BA6NNM3 1639 aa27.25■■□□□ 1.95
SMC1A-204ENST00000463684 RIMBP3Q9UFD9 1639 aa27.25■■□□□ 1.95
SMC1A-204ENST00000463684 ZNF608Q9ULD9 1512 aaPredicted RBP27.25■■□□□ 1.95
SMC1A-204ENST00000463684 CCDC88BA6NC98 1476 aa27.2■■□□□ 1.95
SMC1A-204ENST00000463684 PRDM2Q13029 1718 aa27.19■■□□□ 1.94
SMC1A-204ENST00000463684 ARHGEF11O15085 1522 aa27.16■■□□□ 1.94
SMC1A-204ENST00000463684 TOPBP1Q92547 1522 aa27.16■■□□□ 1.94
SMC1A-204ENST00000463684 ABCC8Q09428 1581 aa27.13■■□□□ 1.93
SMC1A-204ENST00000463684 CYB5RLQ6IPT4 315 aa27.1■■□□□ 1.93
SMC1A-204ENST00000463684 EIF4G3O43432 1585 aaKnown RBP27.02■■□□□ 1.92
SMC1A-204ENST00000463684 FBLN2P98095 1184 aa27■■□□□ 1.91
SMC1A-204ENST00000463684 DNMBPQ6XZF7 1577 aa27■■□□□ 1.91
SMC1A-204ENST00000463684 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.912e-7■■■□□ 16.2
SMC1A-204ENST00000463684 TRHP20396 242 aaPredicted RBP26.97■■□□□ 1.91
SMC1A-204ENST00000463684 TARBP1Q13395 1621 aaKnown RBP26.9■■□□□ 1.9
SMC1A-204ENST00000463684 CHD1O14646 1710 aa26.86■■□□□ 1.89
SMC1A-204ENST00000463684 POLA1P09884 1462 aaPredicted RBP26.85■■□□□ 1.89
SMC1A-204ENST00000463684 ARAP1Q96P48 1450 aa26.85■■□□□ 1.89
SMC1A-204ENST00000463684 SOGA1O94964 1423 aa26.8■■□□□ 1.88
SMC1A-204ENST00000463684 TDRD9Q8NDG6 1382 aaKnown RBP26.79■■□□□ 1.88
SMC1A-204ENST00000463684 RAD54L2Q9Y4B4 1467 aa26.78■■□□□ 1.88
SMC1A-204ENST00000463684 CHMP7Q8WUX9 453 aaPredicted RBP26.73■■□□□ 1.87
SMC1A-204ENST00000463684 SNAPC4Q5SXM2 1469 aa26.68■■□□□ 1.86
SMC1A-204ENST00000463684 FGD5Q6ZNL6 1462 aa26.63■■□□□ 1.85
SMC1A-204ENST00000463684 WDR97A6NE52 1622 aa26.61■■□□□ 1.85
SMC1A-204ENST00000463684 CLASP1Q7Z460 1538 aa26.6■■□□□ 1.85
SMC1A-204ENST00000463684 MAGI1Q96QZ7 1491 aaPredicted RBP26.59■■□□□ 1.85
SMC1A-204ENST00000463684 SYNJ1O43426 1573 aa26.58■■□□□ 1.85
SMC1A-204ENST00000463684 GRIN2BQ13224 1484 aa26.57■■□□□ 1.84
SMC1A-204ENST00000463684 SYNJ2O15056 1496 aa26.53■■□□□ 1.84
SMC1A-204ENST00000463684 CUX1P39880 1505 aa26.52■■□□□ 1.84
SMC1A-204ENST00000463684 AEBP2Q6ZN18 517 aaPredicted RBP26.51■■□□□ 1.83
SMC1A-204ENST00000463684 GAPVD1Q14C86 1478 aa26.42■■□□□ 1.82
SMC1A-204ENST00000463684 PBRM1Q86U86 1689 aa26.31■■□□□ 1.8
SMC1A-204ENST00000463684 ABCA10Q8WWZ4 1543 aa26.3■■□□□ 1.8
SMC1A-204ENST00000463684 ABCA5Q8WWZ7 1642 aa26.24■■□□□ 1.79
SMC1A-204ENST00000463684 GRIN2AQ12879 1464 aa26.21■■□□□ 1.79
SMC1A-204ENST00000463684 WRNQ14191 1432 aaPredicted RBP eCLIP26.19■■□□□ 1.78
SMC1A-204ENST00000463684 ERCC6L2Q5T890 1561 aa26.15■■□□□ 1.78
SMC1A-204ENST00000463684 NUP160Q12769 1436 aa26.13■■□□□ 1.77
SMC1A-204ENST00000463684 SUPT5HO00267 1087 aaKnown RBP26.11■■□□□ 1.77
SMC1A-204ENST00000463684 CEP170Q5SW79 1584 aa26.1■■□□□ 1.77
SMC1A-204ENST00000463684 FHAD1B1AJZ9 1412 aa26.09■■□□□ 1.77
SMC1A-204ENST00000463684 ADAMTS12P58397 1594 aa26.07■■□□□ 1.76
SMC1A-204ENST00000463684 SHROOM2Q13796 1616 aa25.99■■□□□ 1.75
SMC1A-204ENST00000463684 TOP2BQ02880 1626 aa25.98■■□□□ 1.75
SMC1A-204ENST00000463684 JPH4Q96JJ6 628 aa25.97■■□□□ 1.75
SMC1A-204ENST00000463684 ERICH3Q5RHP9 1530 aa25.97■■□□□ 1.75
SMC1A-204ENST00000463684 PRG4Q92954 1404 aaPredicted RBP25.97■■□□□ 1.75
SMC1A-204ENST00000463684 BIVM-ERCC5R4GMW8 1640 aa25.95■■□□□ 1.74
SMC1A-204ENST00000463684 NPM1P06748 294 aaKnown RBP eCLIP25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms