RNA–Protein interactions for RNA: ENST00000463230.5

R3HDM1-213, Transcript of R3H domain containing 1, humanhuman

TSL 2

Gene R3HDM1, Length 2,241 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-213ENST00000463230 NISCHQ9Y2I1 1504 aa31.88■■■□□ 2.69
R3HDM1-213ENST00000463230 CCDC180Q9P1Z9 1646 aa28.46■■■□□ 2.15
R3HDM1-213ENST00000463230 ABCC9O60706 1549 aa27.67■■■□□ 2.02
R3HDM1-213ENST00000463230 RB1CC1Q8TDY2 1594 aa26.75■■□□□ 1.87
R3HDM1-213ENST00000463230 NACADO15069 1562 aa26.74■■□□□ 1.87
R3HDM1-213ENST00000463230 MYO15BQ96JP2 1530 aa26.64■■□□□ 1.85
R3HDM1-213ENST00000463230 ZCCHC6Q5VYS8 1495 aaKnown RBP26.56■■□□□ 1.84
R3HDM1-213ENST00000463230 DCAF1Q9Y4B6 1507 aa26.48■■□□□ 1.83
R3HDM1-213ENST00000463230 DCAF8L2P0C7V8 631 aa26.44■■□□□ 1.82
R3HDM1-213ENST00000463230 UNC13AQ9UPW8 1703 aa26.09■■□□□ 1.77
R3HDM1-213ENST00000463230 BICRAQ9NZM4 1560 aa25.88■■□□□ 1.73
R3HDM1-213ENST00000463230 SCRIBQ14160 1630 aa25.8■■□□□ 1.72
R3HDM1-213ENST00000463230 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
R3HDM1-213ENST00000463230 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
R3HDM1-213ENST00000463230 DNAJC5BQ9UF47 199 aa25.36■■□□□ 1.65
R3HDM1-213ENST00000463230 EIF4G1Q04637 1599 aaKnown RBP25.21■■□□□ 1.63
R3HDM1-213ENST00000463230 CC2D2AQ9P2K1 1620 aa25.1■■□□□ 1.61
R3HDM1-213ENST00000463230 CECR2Q9BXF3 1484 aa24.93■■□□□ 1.58
R3HDM1-213ENST00000463230 SMARCA4P51532 1647 aa24.75■■□□□ 1.55
R3HDM1-213ENST00000463230 BAZ1AQ9NRL2 1556 aaPredicted RBP24.74■■□□□ 1.55
R3HDM1-213ENST00000463230 NCAPD3P42695 1498 aa24.64■■□□□ 1.53
R3HDM1-213ENST00000463230 SMARCA2P51531 1590 aa24.64■■□□□ 1.53
R3HDM1-213ENST00000463230 ATAD2BQ9ULI0 1458 aa24.6■■□□□ 1.53
R3HDM1-213ENST00000463230 PEG3Q9GZU2 1588 aa24.57■■□□□ 1.52
R3HDM1-213ENST00000463230 HMGXB3Q12766 1538 aa24.55■■□□□ 1.52
R3HDM1-213ENST00000463230 MROH2BQ7Z745 1585 aa24.51■■□□□ 1.51
R3HDM1-213ENST00000463230 BAZ1BQ9UIG0 1483 aaKnown RBP24.4■■□□□ 1.5
R3HDM1-213ENST00000463230 CHIC1Q5VXU3 224 aa24.27■■□□□ 1.48
R3HDM1-213ENST00000463230 RSF1Q96T23 1441 aaPredicted RBP24.24■■□□□ 1.47
R3HDM1-213ENST00000463230 WIZO95785 1651 aa24.23■■□□□ 1.47
R3HDM1-213ENST00000463230 TOP2AP11388 1531 aaKnown RBP24.06■■□□□ 1.44
R3HDM1-213ENST00000463230 LAMC3Q9Y6N6 1575 aa24.02■■□□□ 1.44
R3HDM1-213ENST00000463230 AEBP2Q6ZN18 517 aaPredicted RBP23.95■■□□□ 1.42
R3HDM1-213ENST00000463230 NESP48681 1621 aa23.93■■□□□ 1.42
R3HDM1-213ENST00000463230 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
R3HDM1-213ENST00000463230 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
R3HDM1-213ENST00000463230 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.4
R3HDM1-213ENST00000463230 CUX2O14529 1486 aa23.77■■□□□ 1.4
R3HDM1-213ENST00000463230 CFTRP13569 1480 aa23.75■■□□□ 1.39
R3HDM1-213ENST00000463230 CCDC88BA6NC98 1476 aa23.71■■□□□ 1.39
R3HDM1-213ENST00000463230 KIF21AQ7Z4S6 1674 aa23.71■■□□□ 1.39
R3HDM1-213ENST00000463230 THOC2Q8NI27 1593 aaKnown RBP23.68■■□□□ 1.38
R3HDM1-213ENST00000463230 PRDM2Q13029 1718 aa23.64■■□□□ 1.37
R3HDM1-213ENST00000463230 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
R3HDM1-213ENST00000463230 CEP164Q9UPV0 1460 aa23.59■■□□□ 1.37
R3HDM1-213ENST00000463230 MRC2Q9UBG0 1479 aa23.58■■□□□ 1.36
R3HDM1-213ENST00000463230 WDR62O43379 1518 aa23.51■■□□□ 1.35
R3HDM1-213ENST00000463230 SUPT5HO00267 1087 aaKnown RBP23.45■■□□□ 1.34
R3HDM1-213ENST00000463230 URB2Q14146 1524 aaKnown RBP23.35■■□□□ 1.33
R3HDM1-213ENST00000463230 ABCC8Q09428 1581 aa23.31■■□□□ 1.32
R3HDM1-213ENST00000463230 DNMBPQ6XZF7 1577 aa23.23■■□□□ 1.31
R3HDM1-213ENST00000463230 TOPBP1Q92547 1522 aa23.22■■□□□ 1.31
R3HDM1-213ENST00000463230 IFT140Q96RY7 1462 aa23.13■■□□□ 1.29
R3HDM1-213ENST00000463230 CUX1P39880 1505 aa23.02■■□□□ 1.27
R3HDM1-213ENST00000463230 POLA1P09884 1462 aaPredicted RBP23■■□□□ 1.27
R3HDM1-213ENST00000463230 TARBP1Q13395 1621 aaKnown RBP22.99■■□□□ 1.27
R3HDM1-213ENST00000463230 DNAJC5Q9H3Z4 198 aa22.97■■□□□ 1.27
R3HDM1-213ENST00000463230 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
R3HDM1-213ENST00000463230 WDR97A6NE52 1622 aa22.93■■□□□ 1.26
R3HDM1-213ENST00000463230 ZNF608Q9ULD9 1512 aaPredicted RBP22.92■■□□□ 1.26
R3HDM1-213ENST00000463230 SOGA1O94964 1423 aa22.9■■□□□ 1.26
R3HDM1-213ENST00000463230 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.25
R3HDM1-213ENST00000463230 BIVM-ERCC5R4GMW8 1640 aa22.88■■□□□ 1.25
R3HDM1-213ENST00000463230 WRNQ14191 1432 aaPredicted RBP eCLIP22.86■■□□□ 1.25
R3HDM1-213ENST00000463230 TOP2BQ02880 1626 aa22.86■■□□□ 1.25
R3HDM1-213ENST00000463230 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
R3HDM1-213ENST00000463230 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
R3HDM1-213ENST00000463230 AQRO60306 1485 aaKnown RBP eCLIP22.78■■□□□ 1.24
R3HDM1-213ENST00000463230 ABCA10Q8WWZ4 1543 aa22.77■■□□□ 1.24
R3HDM1-213ENST00000463230 TDRD9Q8NDG6 1382 aaKnown RBP22.72■■□□□ 1.23
R3HDM1-213ENST00000463230 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
R3HDM1-213ENST00000463230 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
R3HDM1-213ENST00000463230 OSCARQ8IYS5 282 aa22.68■■□□□ 1.22
R3HDM1-213ENST00000463230 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
R3HDM1-213ENST00000463230 MAGI1Q96QZ7 1491 aaPredicted RBP22.66■■□□□ 1.22
R3HDM1-213ENST00000463230 PBRM1Q86U86 1689 aa22.64■■□□□ 1.21
R3HDM1-213ENST00000463230 SNAPC4Q5SXM2 1469 aa22.61■■□□□ 1.21
R3HDM1-213ENST00000463230 CHD1O14646 1710 aa22.6■■□□□ 1.21
R3HDM1-213ENST00000463230 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
R3HDM1-213ENST00000463230 ERICH3Q5RHP9 1530 aa22.52■■□□□ 1.2
R3HDM1-213ENST00000463230 ADAMTS12P58397 1594 aa22.47■■□□□ 1.19
R3HDM1-213ENST00000463230 CHMP7Q8WUX9 453 aaPredicted RBP22.46■■□□□ 1.19
R3HDM1-213ENST00000463230 FBLN2P98095 1184 aa22.46■■□□□ 1.19
R3HDM1-213ENST00000463230 FHAD1B1AJZ9 1412 aa22.43■■□□□ 1.18
R3HDM1-213ENST00000463230 KIF27Q86VH2 1401 aa22.42■■□□□ 1.18
R3HDM1-213ENST00000463230 CLASP1Q7Z460 1538 aa22.4■■□□□ 1.18
R3HDM1-213ENST00000463230 GRIN2AQ12879 1464 aa22.38■■□□□ 1.17
R3HDM1-213ENST00000463230 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.17
R3HDM1-213ENST00000463230 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.17
R3HDM1-213ENST00000463230 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.17
R3HDM1-213ENST00000463230 CUL7Q14999 1698 aa22.32■■□□□ 1.16
R3HDM1-213ENST00000463230 ARHGEF11O15085 1522 aa22.32■■□□□ 1.16
R3HDM1-213ENST00000463230 NUP160Q12769 1436 aa22.3■■□□□ 1.16
R3HDM1-213ENST00000463230 IGF1RP08069 1367 aa22.29■■□□□ 1.16
R3HDM1-213ENST00000463230 CEP170Q5SW79 1584 aa22.25■■□□□ 1.15
R3HDM1-213ENST00000463230 TRIM41Q8WV44 630 aa22.23■■□□□ 1.15
R3HDM1-213ENST00000463230 SHROOM2Q13796 1616 aa22.16■■□□□ 1.14
R3HDM1-213ENST00000463230 CARMIL1Q5VZK9 1371 aa22.16■■□□□ 1.14
R3HDM1-213ENST00000463230 ARAP1Q96P48 1450 aa22.13■■□□□ 1.13
R3HDM1-213ENST00000463230 RUSC2Q8N2Y8 1516 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms