RNA–Protein interactions for RNA: ENST00000462542.5

PCCB-203, Transcript of propionyl-CoA carboxylase subunit beta, humanhuman

TSL 3

Gene PCCB, Length 488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCCB-203ENST00000462542 NISCHQ9Y2I1 1504 aa29.64■■■□□ 2.34
PCCB-203ENST00000462542 ABCC9O60706 1549 aa27.11■■□□□ 1.93
PCCB-203ENST00000462542 CCDC180Q9P1Z9 1646 aa26.74■■□□□ 1.87
PCCB-203ENST00000462542 DNAJC5BQ9UF47 199 aa25.84■■□□□ 1.73
PCCB-203ENST00000462542 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
PCCB-203ENST00000462542 NACADO15069 1562 aa25.43■■□□□ 1.66
PCCB-203ENST00000462542 DCAF8L2P0C7V8 631 aa25.26■■□□□ 1.63
PCCB-203ENST00000462542 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.63
PCCB-203ENST00000462542 UNC13AQ9UPW8 1703 aa25■■□□□ 1.59
PCCB-203ENST00000462542 MYO15BQ96JP2 1530 aa24.97■■□□□ 1.59
PCCB-203ENST00000462542 BICRAQ9NZM4 1560 aa24.89■■□□□ 1.58
PCCB-203ENST00000462542 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
PCCB-203ENST00000462542 CECR2Q9BXF3 1484 aa24.5■■□□□ 1.51
PCCB-203ENST00000462542 DCAF1Q9Y4B6 1507 aa24.49■■□□□ 1.51
PCCB-203ENST00000462542 CC2D2AQ9P2K1 1620 aa24.47■■□□□ 1.51
PCCB-203ENST00000462542 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
PCCB-203ENST00000462542 EIF4G1Q04637 1599 aaKnown RBP24.33■■□□□ 1.49
PCCB-203ENST00000462542 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
PCCB-203ENST00000462542 DNAJC5Q9H3Z4 198 aa24.1■■□□□ 1.45
PCCB-203ENST00000462542 CUX2O14529 1486 aa23.59■■□□□ 1.37
PCCB-203ENST00000462542 NCAPD3P42695 1498 aa23.5■■□□□ 1.35
PCCB-203ENST00000462542 ERCC6Q03468 1493 aa23.48■■□□□ 1.35
PCCB-203ENST00000462542 ATAD2BQ9ULI0 1458 aa23.33■■□□□ 1.33
PCCB-203ENST00000462542 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
PCCB-203ENST00000462542 HMGXB3Q12766 1538 aa23.23■■□□□ 1.31
PCCB-203ENST00000462542 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
PCCB-203ENST00000462542 NESP48681 1621 aa23.15■■□□□ 1.3
PCCB-203ENST00000462542 BAZ1BQ9UIG0 1483 aaKnown RBP23.08■■□□□ 1.29
PCCB-203ENST00000462542 BAZ1AQ9NRL2 1556 aaPredicted RBP23.03■■□□□ 1.28
PCCB-203ENST00000462542 LAMC3Q9Y6N6 1575 aa23■■□□□ 1.27
PCCB-203ENST00000462542 PEG3Q9GZU2 1588 aa22.98■■□□□ 1.27
PCCB-203ENST00000462542 THOC2Q8NI27 1593 aaKnown RBP22.97■■□□□ 1.27
PCCB-203ENST00000462542 PDS5BQ9NTI5 1447 aa22.93■■□□□ 1.26
PCCB-203ENST00000462542 KIF21AQ7Z4S6 1674 aa22.82■■□□□ 1.24
PCCB-203ENST00000462542 TRIM41Q8WV44 630 aa22.81■■□□□ 1.24
PCCB-203ENST00000462542 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
PCCB-203ENST00000462542 CADPSQ9ULU8 1353 aa22.77■■□□□ 1.24
PCCB-203ENST00000462542 MRC2Q9UBG0 1479 aa22.69■■□□□ 1.22
PCCB-203ENST00000462542 WDR62O43379 1518 aa22.62■■□□□ 1.21
PCCB-203ENST00000462542 OSCARQ8IYS5 282 aa22.54■■□□□ 1.2
PCCB-203ENST00000462542 CEP164Q9UPV0 1460 aa22.53■■□□□ 1.2
PCCB-203ENST00000462542 WIZO95785 1651 aa22.48■■□□□ 1.19
PCCB-203ENST00000462542 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
PCCB-203ENST00000462542 CFTRP13569 1480 aa22.4■■□□□ 1.18
PCCB-203ENST00000462542 URB2Q14146 1524 aaKnown RBP22.27■■□□□ 1.16
PCCB-203ENST00000462542 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
PCCB-203ENST00000462542 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
PCCB-203ENST00000462542 RIMBP3CA6NJZ7 1639 aa22.13■■□□□ 1.13
PCCB-203ENST00000462542 RIMBP3BA6NNM3 1639 aa22.13■■□□□ 1.13
PCCB-203ENST00000462542 RIMBP3Q9UFD9 1639 aa22.13■■□□□ 1.13
PCCB-203ENST00000462542 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
PCCB-203ENST00000462542 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
PCCB-203ENST00000462542 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
PCCB-203ENST00000462542 ARHGEF11O15085 1522 aa22.04■■□□□ 1.12
PCCB-203ENST00000462542 ABCC8Q09428 1581 aa22.01■■□□□ 1.11
PCCB-203ENST00000462542 CYB5RLQ6IPT4 315 aa22■■□□□ 1.11
PCCB-203ENST00000462542 CCDC88BA6NC98 1476 aa21.98■■□□□ 1.11
PCCB-203ENST00000462542 TOPBP1Q92547 1522 aa21.98■■□□□ 1.11
PCCB-203ENST00000462542 TRHP20396 242 aaPredicted RBP21.89■■□□□ 1.09
PCCB-203ENST00000462542 EIF4G3O43432 1585 aaKnown RBP21.88■■□□□ 1.09
PCCB-203ENST00000462542 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
PCCB-203ENST00000462542 AQRO60306 1485 aaKnown RBP eCLIP21.85■■□□□ 1.093e-6■■■■□ 21.1
PCCB-203ENST00000462542 FBLN2P98095 1184 aa21.84■■□□□ 1.09
PCCB-203ENST00000462542 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
PCCB-203ENST00000462542 CHD1O14646 1710 aa21.79■■□□□ 1.08
PCCB-203ENST00000462542 ARAP1Q96P48 1450 aa21.78■■□□□ 1.08
PCCB-203ENST00000462542 POLA1P09884 1462 aaPredicted RBP21.72■■□□□ 1.07
PCCB-203ENST00000462542 SOGA1O94964 1423 aa21.69■■□□□ 1.06
PCCB-203ENST00000462542 TDRD9Q8NDG6 1382 aaKnown RBP21.66■■□□□ 1.06
PCCB-203ENST00000462542 CHMP7Q8WUX9 453 aaPredicted RBP21.65■■□□□ 1.06
PCCB-203ENST00000462542 RAD54L2Q9Y4B4 1467 aa21.64■■□□□ 1.06
PCCB-203ENST00000462542 WDR97A6NE52 1622 aa21.6■■□□□ 1.05
PCCB-203ENST00000462542 AEBP2Q6ZN18 517 aaPredicted RBP21.58■■□□□ 1.05
PCCB-203ENST00000462542 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
PCCB-203ENST00000462542 CLASP1Q7Z460 1538 aa21.56■■□□□ 1.04
PCCB-203ENST00000462542 MAGI1Q96QZ7 1491 aaPredicted RBP21.56■■□□□ 1.04
PCCB-203ENST00000462542 SYNJ1O43426 1573 aa21.56■■□□□ 1.04
PCCB-203ENST00000462542 GRIN2BQ13224 1484 aa21.52■■□□□ 1.04
PCCB-203ENST00000462542 FGD5Q6ZNL6 1462 aa21.52■■□□□ 1.04
PCCB-203ENST00000462542 SYNJ2O15056 1496 aa21.49■■□□□ 1.03
PCCB-203ENST00000462542 CUX1P39880 1505 aa21.43■■□□□ 1.02
PCCB-203ENST00000462542 GAPVD1Q14C86 1478 aa21.41■■□□□ 1.02
PCCB-203ENST00000462542 PBRM1Q86U86 1689 aa21.31■■□□□ 1
PCCB-203ENST00000462542 ABCA10Q8WWZ4 1543 aa21.29■■□□□ 1
PCCB-203ENST00000462542 ABCA5Q8WWZ7 1642 aa21.23■□□□□ 0.99
PCCB-203ENST00000462542 GRIN2AQ12879 1464 aa21.21■□□□□ 0.99
PCCB-203ENST00000462542 NUP160Q12769 1436 aa21.17■□□□□ 0.98
PCCB-203ENST00000462542 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.98
PCCB-203ENST00000462542 ERCC6L2Q5T890 1561 aa21.16■□□□□ 0.98
PCCB-203ENST00000462542 CEP170Q5SW79 1584 aa21.14■□□□□ 0.98
PCCB-203ENST00000462542 FHAD1B1AJZ9 1412 aa21.12■□□□□ 0.97
PCCB-203ENST00000462542 ADAMTS12P58397 1594 aa21.09■□□□□ 0.97
PCCB-203ENST00000462542 SHROOM2Q13796 1616 aa21.08■□□□□ 0.97
PCCB-203ENST00000462542 JPH4Q96JJ6 628 aa21.05■□□□□ 0.96
PCCB-203ENST00000462542 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
PCCB-203ENST00000462542 PRG4Q92954 1404 aaPredicted RBP21.02■□□□□ 0.96
PCCB-203ENST00000462542 NPM1P06748 294 aaKnown RBP eCLIP21.01■□□□□ 0.95
PCCB-203ENST00000462542 TOP2BQ02880 1626 aa21■□□□□ 0.95
PCCB-203ENST00000462542 KIF13AQ9H1H9 1805 aa21■□□□□ 0.95
PCCB-203ENST00000462542 BIVM-ERCC5R4GMW8 1640 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms