RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 NISCHQ9Y2I1 1504 aa36.02■■■■□ 3.36
TMEM39A-203ENST00000461654 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
TMEM39A-203ENST00000461654 ABCC9O60706 1549 aa31.76■■■□□ 2.68
TMEM39A-203ENST00000461654 RB1CC1Q8TDY2 1594 aa30.44■■■□□ 2.46
TMEM39A-203ENST00000461654 NACADO15069 1562 aa30.35■■■□□ 2.45
TMEM39A-203ENST00000461654 DCAF8L2P0C7V8 631 aa30.18■■■□□ 2.42
TMEM39A-203ENST00000461654 MYO15BQ96JP2 1530 aa30.12■■■□□ 2.41
TMEM39A-203ENST00000461654 ZCCHC6Q5VYS8 1495 aaKnown RBP29.91■■■□□ 2.38
TMEM39A-203ENST00000461654 DCAF1Q9Y4B6 1507 aa29.83■■■□□ 2.37
TMEM39A-203ENST00000461654 UNC13AQ9UPW8 1703 aa29.66■■■□□ 2.34
TMEM39A-203ENST00000461654 PABPN1Q86U42 306 aaKnown RBP eCLIP29.65■■■□□ 2.34
TMEM39A-203ENST00000461654 DNAJC5BQ9UF47 199 aa29.56■■■□□ 2.32
TMEM39A-203ENST00000461654 BICRAQ9NZM4 1560 aa29.53■■■□□ 2.32
TMEM39A-203ENST00000461654 SHROOM4Q9ULL8 1493 aa29.26■■■□□ 2.27
TMEM39A-203ENST00000461654 SCRIBQ14160 1630 aa29.22■■■□□ 2.27
TMEM39A-203ENST00000461654 EIF4G1Q04637 1599 aaKnown RBP28.77■■■□□ 2.2
TMEM39A-203ENST00000461654 CC2D2AQ9P2K1 1620 aa28.72■■■□□ 2.19
TMEM39A-203ENST00000461654 CECR2Q9BXF3 1484 aa28.62■■■□□ 2.17
TMEM39A-203ENST00000461654 NCAPD3P42695 1498 aa28.05■■■□□ 2.08
TMEM39A-203ENST00000461654 SMARCA4P51532 1647 aa27.97■■■□□ 2.07
TMEM39A-203ENST00000461654 ATAD2BQ9ULI0 1458 aa27.96■■■□□ 2.07
TMEM39A-203ENST00000461654 BAZ1AQ9NRL2 1556 aaPredicted RBP27.92■■■□□ 2.06
TMEM39A-203ENST00000461654 SMARCA2P51531 1590 aa27.9■■■□□ 2.06
TMEM39A-203ENST00000461654 HMGXB3Q12766 1538 aa27.82■■■□□ 2.04
TMEM39A-203ENST00000461654 PEG3Q9GZU2 1588 aa27.77■■■□□ 2.04
TMEM39A-203ENST00000461654 MROH2BQ7Z745 1585 aa27.72■■■□□ 2.03
TMEM39A-203ENST00000461654 BAZ1BQ9UIG0 1483 aaKnown RBP27.68■■■□□ 2.02
TMEM39A-203ENST00000461654 ERCC6Q03468 1493 aa27.4■■□□□ 1.98
TMEM39A-203ENST00000461654 NESP48681 1621 aa27.38■■□□□ 1.97
TMEM39A-203ENST00000461654 WIZO95785 1651 aa27.36■■□□□ 1.97
TMEM39A-203ENST00000461654 RSF1Q96T23 1441 aaPredicted RBP27.32■■□□□ 1.96
TMEM39A-203ENST00000461654 CUX2O14529 1486 aa27.31■■□□□ 1.96
TMEM39A-203ENST00000461654 LAMC3Q9Y6N6 1575 aa27.31■■□□□ 1.96
TMEM39A-203ENST00000461654 CADPSQ9ULU8 1353 aa27.2■■□□□ 1.94
TMEM39A-203ENST00000461654 PDS5BQ9NTI5 1447 aa27.16■■□□□ 1.94
TMEM39A-203ENST00000461654 TOP2AP11388 1531 aaKnown RBP27.09■■□□□ 1.93
TMEM39A-203ENST00000461654 THOC2Q8NI27 1593 aaKnown RBP27.04■■□□□ 1.92
TMEM39A-203ENST00000461654 KIF21AQ7Z4S6 1674 aa27■■□□□ 1.91
TMEM39A-203ENST00000461654 SUPT5HO00267 1087 aaKnown RBP26.96■■□□□ 1.91
TMEM39A-203ENST00000461654 CFTRP13569 1480 aa26.95■■□□□ 1.91
TMEM39A-203ENST00000461654 DNAJC5Q9H3Z4 198 aa26.95■■□□□ 1.9
TMEM39A-203ENST00000461654 MRC2Q9UBG0 1479 aa26.87■■□□□ 1.89
TMEM39A-203ENST00000461654 FANCD2Q9BXW9 1451 aa26.83■■□□□ 1.89
TMEM39A-203ENST00000461654 CEP164Q9UPV0 1460 aa26.82■■□□□ 1.88
TMEM39A-203ENST00000461654 WDR62O43379 1518 aa26.8■■□□□ 1.88
TMEM39A-203ENST00000461654 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
TMEM39A-203ENST00000461654 PRDM2Q13029 1718 aa26.59■■□□□ 1.85
TMEM39A-203ENST00000461654 URB2Q14146 1524 aaKnown RBP26.59■■□□□ 1.85
TMEM39A-203ENST00000461654 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
TMEM39A-203ENST00000461654 TOPBP1Q92547 1522 aa26.36■■□□□ 1.81
TMEM39A-203ENST00000461654 IFT140Q96RY7 1462 aa26.31■■□□□ 1.8
TMEM39A-203ENST00000461654 DNMBPQ6XZF7 1577 aa26.29■■□□□ 1.8
TMEM39A-203ENST00000461654 ZNF608Q9ULD9 1512 aaPredicted RBP26.19■■□□□ 1.78
TMEM39A-203ENST00000461654 OSCARQ8IYS5 282 aa26.16■■□□□ 1.78
TMEM39A-203ENST00000461654 POLA1P09884 1462 aaPredicted RBP26.11■■□□□ 1.77
TMEM39A-203ENST00000461654 TARBP1Q13395 1621 aaKnown RBP26.1■■□□□ 1.77
TMEM39A-203ENST00000461654 SOGA1O94964 1423 aa26.03■■□□□ 1.76
TMEM39A-203ENST00000461654 EIF4G3O43432 1585 aaKnown RBP26.03■■□□□ 1.76
TMEM39A-203ENST00000461654 CUX1P39880 1505 aa26.02■■□□□ 1.76
TMEM39A-203ENST00000461654 AQRO60306 1485 aaKnown RBP eCLIP26■■□□□ 1.755e-7■■■■■ 45.1
TMEM39A-203ENST00000461654 FGD5Q6ZNL6 1462 aa25.98■■□□□ 1.75
TMEM39A-203ENST00000461654 RAD54L2Q9Y4B4 1467 aa25.98■■□□□ 1.75
TMEM39A-203ENST00000461654 WDR97A6NE52 1622 aa25.91■■□□□ 1.74
TMEM39A-203ENST00000461654 TDRD9Q8NDG6 1382 aaKnown RBP25.91■■□□□ 1.74
TMEM39A-203ENST00000461654 TRIM41Q8WV44 630 aa25.78■■□□□ 1.72
TMEM39A-203ENST00000461654 GRIN2BQ13224 1484 aa25.76■■□□□ 1.71
TMEM39A-203ENST00000461654 ABCA10Q8WWZ4 1543 aa25.75■■□□□ 1.71
TMEM39A-203ENST00000461654 WRNQ14191 1432 aaPredicted RBP eCLIP25.74■■□□□ 1.71
TMEM39A-203ENST00000461654 FBLN2P98095 1184 aa25.74■■□□□ 1.71
TMEM39A-203ENST00000461654 CHD1O14646 1710 aa25.74■■□□□ 1.71
TMEM39A-203ENST00000461654 SNAPC4Q5SXM2 1469 aa25.73■■□□□ 1.71
TMEM39A-203ENST00000461654 MAGI1Q96QZ7 1491 aaPredicted RBP25.73■■□□□ 1.71
TMEM39A-203ENST00000461654 TOP2BQ02880 1626 aa25.7■■□□□ 1.71
TMEM39A-203ENST00000461654 GAPVD1Q14C86 1478 aa25.7■■□□□ 1.7
TMEM39A-203ENST00000461654 BIVM-ERCC5R4GMW8 1640 aa25.69■■□□□ 1.7
TMEM39A-203ENST00000461654 RIMBP3CA6NJZ7 1639 aa25.67■■□□□ 1.7
TMEM39A-203ENST00000461654 RIMBP3BA6NNM3 1639 aa25.67■■□□□ 1.7
TMEM39A-203ENST00000461654 RIMBP3Q9UFD9 1639 aa25.67■■□□□ 1.7
TMEM39A-203ENST00000461654 CHMP7Q8WUX9 453 aaPredicted RBP25.67■■□□□ 1.7
TMEM39A-203ENST00000461654 ARHGEF11O15085 1522 aa25.65■■□□□ 1.7
TMEM39A-203ENST00000461654 SYNJ1O43426 1573 aa25.65■■□□□ 1.7
TMEM39A-203ENST00000461654 ABCA5Q8WWZ7 1642 aa25.64■■□□□ 1.7
TMEM39A-203ENST00000461654 SYNJ2O15056 1496 aa25.64■■□□□ 1.69
TMEM39A-203ENST00000461654 CHIC1Q5VXU3 224 aa25.61■■□□□ 1.69
TMEM39A-203ENST00000461654 PBRM1Q86U86 1689 aa25.58■■□□□ 1.69
TMEM39A-203ENST00000461654 CLASP1Q7Z460 1538 aa25.53■■□□□ 1.68
TMEM39A-203ENST00000461654 CYB5RLQ6IPT4 315 aa25.47■■□□□ 1.67
TMEM39A-203ENST00000461654 ERICH3Q5RHP9 1530 aa25.43■■□□□ 1.66
TMEM39A-203ENST00000461654 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
TMEM39A-203ENST00000461654 FHAD1B1AJZ9 1412 aa25.42■■□□□ 1.66
TMEM39A-203ENST00000461654 GRIN2AQ12879 1464 aa25.41■■□□□ 1.66
TMEM39A-203ENST00000461654 ADAMTS12P58397 1594 aa25.4■■□□□ 1.66
TMEM39A-203ENST00000461654 NUP160Q12769 1436 aa25.35■■□□□ 1.65
TMEM39A-203ENST00000461654 CEP170Q5SW79 1584 aa25.27■■□□□ 1.64
TMEM39A-203ENST00000461654 KIF27Q86VH2 1401 aa25.25■■□□□ 1.63
TMEM39A-203ENST00000461654 IGF1RP08069 1367 aa25.22■■□□□ 1.63
TMEM39A-203ENST00000461654 SHROOM2Q13796 1616 aa25.17■■□□□ 1.62
TMEM39A-203ENST00000461654 ERCC6L2Q5T890 1561 aa25.11■■□□□ 1.61
TMEM39A-203ENST00000461654 JPH4Q96JJ6 628 aa25.11■■□□□ 1.61
TMEM39A-203ENST00000461654 CUL7Q14999 1698 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms