RNA–Protein interactions for RNA: ENST00000461577.5

TRAPPC12-213, Transcript of trafficking protein particle complex 12, humanhuman

TSL 2

Gene TRAPPC12, Length 677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC12-213ENST00000461577 NISCHQ9Y2I1 1504 aa25.62■■□□□ 1.69
TRAPPC12-213ENST00000461577 CCDC180Q9P1Z9 1646 aa22.79■■□□□ 1.24
TRAPPC12-213ENST00000461577 ABCC9O60706 1549 aa22.31■■□□□ 1.16
TRAPPC12-213ENST00000461577 DCAF8L2P0C7V8 631 aa21.47■■□□□ 1.03
TRAPPC12-213ENST00000461577 RB1CC1Q8TDY2 1594 aa21.47■■□□□ 1.03
TRAPPC12-213ENST00000461577 NACADO15069 1562 aa21.43■■□□□ 1.02
TRAPPC12-213ENST00000461577 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
TRAPPC12-213ENST00000461577 MYO15BQ96JP2 1530 aa21.26■□□□□ 0.99
TRAPPC12-213ENST00000461577 DCAF1Q9Y4B6 1507 aa21.18■□□□□ 0.98
TRAPPC12-213ENST00000461577 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
TRAPPC12-213ENST00000461577 PABPN1Q86U42 306 aaKnown RBP eCLIP20.85■□□□□ 0.93
TRAPPC12-213ENST00000461577 SCRIBQ14160 1630 aa20.81■□□□□ 0.92
TRAPPC12-213ENST00000461577 BICRAQ9NZM4 1560 aa20.77■□□□□ 0.92
TRAPPC12-213ENST00000461577 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
TRAPPC12-213ENST00000461577 DNAJC5BQ9UF47 199 aa20.43■□□□□ 0.86
TRAPPC12-213ENST00000461577 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
TRAPPC12-213ENST00000461577 CC2D2AQ9P2K1 1620 aa20.17■□□□□ 0.82
TRAPPC12-213ENST00000461577 CECR2Q9BXF3 1484 aa20.04■□□□□ 0.8
TRAPPC12-213ENST00000461577 SMARCA4P51532 1647 aa19.89■□□□□ 0.77
TRAPPC12-213ENST00000461577 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
TRAPPC12-213ENST00000461577 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.76
TRAPPC12-213ENST00000461577 SMARCA2P51531 1590 aa19.76■□□□□ 0.75
TRAPPC12-213ENST00000461577 NCAPD3P42695 1498 aa19.74■□□□□ 0.75
TRAPPC12-213ENST00000461577 MROH2BQ7Z745 1585 aa19.74■□□□□ 0.75
TRAPPC12-213ENST00000461577 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
TRAPPC12-213ENST00000461577 HMGXB3Q12766 1538 aa19.66■□□□□ 0.74
TRAPPC12-213ENST00000461577 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
TRAPPC12-213ENST00000461577 WIZO95785 1651 aa19.56■□□□□ 0.72
TRAPPC12-213ENST00000461577 RSF1Q96T23 1441 aaPredicted RBP19.51■□□□□ 0.71
TRAPPC12-213ENST00000461577 TOP2AP11388 1531 aaKnown RBP19.33■□□□□ 0.68
TRAPPC12-213ENST00000461577 NESP48681 1621 aa19.29■□□□□ 0.68
TRAPPC12-213ENST00000461577 LAMC3Q9Y6N6 1575 aa19.25■□□□□ 0.67
TRAPPC12-213ENST00000461577 ERCC6Q03468 1493 aa19.25■□□□□ 0.67
TRAPPC12-213ENST00000461577 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
TRAPPC12-213ENST00000461577 PDS5BQ9NTI5 1447 aa19.14■□□□□ 0.65
TRAPPC12-213ENST00000461577 CCDC88BA6NC98 1476 aa19.1■□□□□ 0.65
TRAPPC12-213ENST00000461577 KIF21AQ7Z4S6 1674 aa19.08■□□□□ 0.65
TRAPPC12-213ENST00000461577 SUPT5HO00267 1087 aaKnown RBP19.07■□□□□ 0.64
TRAPPC12-213ENST00000461577 CFTRP13569 1480 aa19.06■□□□□ 0.64
TRAPPC12-213ENST00000461577 CUX2O14529 1486 aa19.02■□□□□ 0.63
TRAPPC12-213ENST00000461577 THOC2Q8NI27 1593 aaKnown RBP19■□□□□ 0.63
TRAPPC12-213ENST00000461577 FANCD2Q9BXW9 1451 aa18.97■□□□□ 0.63
TRAPPC12-213ENST00000461577 PRDM2Q13029 1718 aa18.97■□□□□ 0.63
TRAPPC12-213ENST00000461577 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
TRAPPC12-213ENST00000461577 MRC2Q9UBG0 1479 aa18.93■□□□□ 0.62
TRAPPC12-213ENST00000461577 WDR62O43379 1518 aa18.85■□□□□ 0.61
TRAPPC12-213ENST00000461577 URB2Q14146 1524 aaKnown RBP18.77■□□□□ 0.6
TRAPPC12-213ENST00000461577 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
TRAPPC12-213ENST00000461577 TOPBP1Q92547 1522 aa18.67■□□□□ 0.58
TRAPPC12-213ENST00000461577 DNMBPQ6XZF7 1577 aa18.65■□□□□ 0.58
TRAPPC12-213ENST00000461577 IFT140Q96RY7 1462 aa18.56■□□□□ 0.56
TRAPPC12-213ENST00000461577 CUX1P39880 1505 aa18.52■□□□□ 0.56
TRAPPC12-213ENST00000461577 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
TRAPPC12-213ENST00000461577 FGD5Q6ZNL6 1462 aa18.46■□□□□ 0.55
TRAPPC12-213ENST00000461577 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
TRAPPC12-213ENST00000461577 ZNF608Q9ULD9 1512 aaPredicted RBP18.45■□□□□ 0.54
TRAPPC12-213ENST00000461577 SOGA1O94964 1423 aa18.45■□□□□ 0.54
TRAPPC12-213ENST00000461577 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
TRAPPC12-213ENST00000461577 DNAJC5Q9H3Z4 198 aa18.43■□□□□ 0.54
TRAPPC12-213ENST00000461577 WRNQ14191 1432 aaPredicted RBP eCLIP18.41■□□□□ 0.54
TRAPPC12-213ENST00000461577 EIF4G3O43432 1585 aaKnown RBP18.4■□□□□ 0.54
TRAPPC12-213ENST00000461577 BIVM-ERCC5R4GMW8 1640 aa18.38■□□□□ 0.53
TRAPPC12-213ENST00000461577 TOP2BQ02880 1626 aa18.37■□□□□ 0.53
TRAPPC12-213ENST00000461577 SYNJ1O43426 1573 aa18.36■□□□□ 0.53
TRAPPC12-213ENST00000461577 AQRO60306 1485 aaKnown RBP eCLIP18.36■□□□□ 0.53
TRAPPC12-213ENST00000461577 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.53
TRAPPC12-213ENST00000461577 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
TRAPPC12-213ENST00000461577 ABCA10Q8WWZ4 1543 aa18.28■□□□□ 0.52
TRAPPC12-213ENST00000461577 OSCARQ8IYS5 282 aa18.24■□□□□ 0.51
TRAPPC12-213ENST00000461577 GRIN2BQ13224 1484 aa18.23■□□□□ 0.51
TRAPPC12-213ENST00000461577 GAPVD1Q14C86 1478 aa18.23■□□□□ 0.51
TRAPPC12-213ENST00000461577 PBRM1Q86U86 1689 aa18.22■□□□□ 0.51
TRAPPC12-213ENST00000461577 ABCA5Q8WWZ7 1642 aa18.21■□□□□ 0.51
TRAPPC12-213ENST00000461577 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
TRAPPC12-213ENST00000461577 CHD1O14646 1710 aa18.2■□□□□ 0.5
TRAPPC12-213ENST00000461577 FBLN2P98095 1184 aa18.19■□□□□ 0.5
TRAPPC12-213ENST00000461577 MAGI1Q96QZ7 1491 aaPredicted RBP18.17■□□□□ 0.5
TRAPPC12-213ENST00000461577 CHMP7Q8WUX9 453 aaPredicted RBP18.13■□□□□ 0.49
TRAPPC12-213ENST00000461577 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
TRAPPC12-213ENST00000461577 ERICH3Q5RHP9 1530 aa18.07■□□□□ 0.48
TRAPPC12-213ENST00000461577 ADAMTS12P58397 1594 aa18.04■□□□□ 0.48
TRAPPC12-213ENST00000461577 KIF27Q86VH2 1401 aa18.04■□□□□ 0.48
TRAPPC12-213ENST00000461577 FHAD1B1AJZ9 1412 aa18.02■□□□□ 0.48
TRAPPC12-213ENST00000461577 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
TRAPPC12-213ENST00000461577 GRIN2AQ12879 1464 aa17.99■□□□□ 0.47
TRAPPC12-213ENST00000461577 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
TRAPPC12-213ENST00000461577 RIMBP3CA6NJZ7 1639 aa17.95■□□□□ 0.46
TRAPPC12-213ENST00000461577 RIMBP3BA6NNM3 1639 aa17.95■□□□□ 0.46
TRAPPC12-213ENST00000461577 RIMBP3Q9UFD9 1639 aa17.95■□□□□ 0.46
TRAPPC12-213ENST00000461577 IGF1RP08069 1367 aa17.94■□□□□ 0.46
TRAPPC12-213ENST00000461577 ARHGEF11O15085 1522 aa17.93■□□□□ 0.46
TRAPPC12-213ENST00000461577 CUL7Q14999 1698 aa17.93■□□□□ 0.46
TRAPPC12-213ENST00000461577 CEP170Q5SW79 1584 aa17.9■□□□□ 0.46
TRAPPC12-213ENST00000461577 NUP160Q12769 1436 aa17.89■□□□□ 0.45
TRAPPC12-213ENST00000461577 CARMIL1Q5VZK9 1371 aa17.86■□□□□ 0.45
TRAPPC12-213ENST00000461577 RUSC2Q8N2Y8 1516 aa17.86■□□□□ 0.45
TRAPPC12-213ENST00000461577 CYB5RLQ6IPT4 315 aa17.79■□□□□ 0.44
TRAPPC12-213ENST00000461577 ARAP1Q96P48 1450 aa17.78■□□□□ 0.44
TRAPPC12-213ENST00000461577 SHROOM2Q13796 1616 aa17.76■□□□□ 0.43
TRAPPC12-213ENST00000461577 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms