RNA–Protein interactions for RNA: ENST00000460475.1

PLOD3-209, Transcript of procollagen-lysine,2-oxoglutarate 5-dioxygenase 3, humanhuman

TSL 3

Gene PLOD3, Length 746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLOD3-209ENST00000460475 NISCHQ9Y2I1 1504 aa43.3■■■■■ 4.52
PLOD3-209ENST00000460475 CCDC180Q9P1Z9 1646 aa38.51■■■■□ 3.76
PLOD3-209ENST00000460475 ABCC9O60706 1549 aa37.61■■■■□ 3.61
PLOD3-209ENST00000460475 RB1CC1Q8TDY2 1594 aa36.23■■■■□ 3.39
PLOD3-209ENST00000460475 NACADO15069 1562 aa36.21■■■■□ 3.39
PLOD3-209ENST00000460475 DCAF8L2P0C7V8 631 aa36.06■■■■□ 3.36
PLOD3-209ENST00000460475 ZCCHC6Q5VYS8 1495 aaKnown RBP36.05■■■■□ 3.36
PLOD3-209ENST00000460475 MYO15BQ96JP2 1530 aa36.05■■■■□ 3.36
PLOD3-209ENST00000460475 DCAF1Q9Y4B6 1507 aa35.88■■■■□ 3.33
PLOD3-209ENST00000460475 UNC13AQ9UPW8 1703 aa35.42■■■■□ 3.26
PLOD3-209ENST00000460475 BICRAQ9NZM4 1560 aa35.16■■■■□ 3.22
PLOD3-209ENST00000460475 PABPN1Q86U42 306 aaKnown RBP eCLIP35.14■■■■□ 3.22
PLOD3-209ENST00000460475 SCRIBQ14160 1630 aa35.05■■■■□ 3.2
PLOD3-209ENST00000460475 SHROOM4Q9ULL8 1493 aa34.82■■■■□ 3.16
PLOD3-209ENST00000460475 DNAJC5BQ9UF47 199 aa34.58■■■■□ 3.13
PLOD3-209ENST00000460475 EIF4G1Q04637 1599 aaKnown RBP34.2■■■■□ 3.07
PLOD3-209ENST00000460475 CC2D2AQ9P2K1 1620 aa34.05■■■■□ 3.04
PLOD3-209ENST00000460475 CECR2Q9BXF3 1484 aa33.82■■■■□ 3.01
PLOD3-209ENST00000460475 SMARCA4P51532 1647 aa33.58■■■□□ 2.97
PLOD3-209ENST00000460475 BAZ1AQ9NRL2 1556 aaPredicted RBP33.55■■■□□ 2.96
PLOD3-209ENST00000460475 NCAPD3P42695 1498 aa33.44■■■□□ 2.94
PLOD3-209ENST00000460475 ATAD2BQ9ULI0 1458 aa33.41■■■□□ 2.94
PLOD3-209ENST00000460475 SMARCA2P51531 1590 aa33.37■■■□□ 2.93
PLOD3-209ENST00000460475 MROH2BQ7Z745 1585 aa33.34■■■□□ 2.93
PLOD3-209ENST00000460475 PEG3Q9GZU2 1588 aa33.31■■■□□ 2.92
PLOD3-209ENST00000460475 HMGXB3Q12766 1538 aa33.24■■■□□ 2.91
PLOD3-209ENST00000460475 BAZ1BQ9UIG0 1483 aaKnown RBP33.11■■■□□ 2.89
PLOD3-209ENST00000460475 RSF1Q96T23 1441 aaPredicted RBP32.98■■■□□ 2.87
PLOD3-209ENST00000460475 WIZO95785 1651 aa32.97■■■□□ 2.87
PLOD3-209ENST00000460475 TOP2AP11388 1531 aaKnown RBP32.64■■■□□ 2.82
PLOD3-209ENST00000460475 NESP48681 1621 aa32.56■■■□□ 2.8
PLOD3-209ENST00000460475 LAMC3Q9Y6N6 1575 aa32.52■■■□□ 2.8
PLOD3-209ENST00000460475 CADPSQ9ULU8 1353 aa32.43■■■□□ 2.78
PLOD3-209ENST00000460475 ERCC6Q03468 1493 aa32.41■■■□□ 2.78
PLOD3-209ENST00000460475 PDS5BQ9NTI5 1447 aa32.29■■■□□ 2.76
PLOD3-209ENST00000460475 CCDC88BA6NC98 1476 aa32.26■■■□□ 2.75
PLOD3-209ENST00000460475 CFTRP13569 1480 aa32.25■■■□□ 2.75
PLOD3-209ENST00000460475 KIF21AQ7Z4S6 1674 aa32.18■■■□□ 2.74
PLOD3-209ENST00000460475 CUX2O14529 1486 aa32.14■■■□□ 2.74
PLOD3-209ENST00000460475 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
PLOD3-209ENST00000460475 SUPT5HO00267 1087 aaKnown RBP32.04■■■□□ 2.72
PLOD3-209ENST00000460475 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
PLOD3-209ENST00000460475 PRDM2Q13029 1718 aa31.99■■■□□ 2.71
PLOD3-209ENST00000460475 CEP164Q9UPV0 1460 aa31.97■■■□□ 2.71
PLOD3-209ENST00000460475 MRC2Q9UBG0 1479 aa31.95■■■□□ 2.7
PLOD3-209ENST00000460475 WDR62O43379 1518 aa31.86■■■□□ 2.69
PLOD3-209ENST00000460475 URB2Q14146 1524 aaKnown RBP31.71■■■□□ 2.67
PLOD3-209ENST00000460475 ABCC8Q09428 1581 aa31.55■■■□□ 2.64
PLOD3-209ENST00000460475 TOPBP1Q92547 1522 aa31.53■■■□□ 2.64
PLOD3-209ENST00000460475 DNMBPQ6XZF7 1577 aa31.49■■■□□ 2.63
PLOD3-209ENST00000460475 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
PLOD3-209ENST00000460475 CUX1P39880 1505 aa31.28■■■□□ 2.6
PLOD3-209ENST00000460475 POLA1P09884 1462 aaPredicted RBP31.26■■■□□ 2.59
PLOD3-209ENST00000460475 TARBP1Q13395 1621 aaKnown RBP31.2■■■□□ 2.59
PLOD3-209ENST00000460475 DNAJC5Q9H3Z4 198 aa31.18■■■□□ 2.58
PLOD3-209ENST00000460475 ZNF608Q9ULD9 1512 aaPredicted RBP31.18■■■□□ 2.58
PLOD3-209ENST00000460475 FGD5Q6ZNL6 1462 aa31.16■■■□□ 2.58
PLOD3-209ENST00000460475 SOGA1O94964 1423 aa31.12■■■□□ 2.57
PLOD3-209ENST00000460475 RAD54L2Q9Y4B4 1467 aa31.09■■■□□ 2.57
PLOD3-209ENST00000460475 WRNQ14191 1432 aaPredicted RBP eCLIP31.07■■■□□ 2.57
PLOD3-209ENST00000460475 EIF4G3O43432 1585 aaKnown RBP31.05■■■□□ 2.56
PLOD3-209ENST00000460475 TOP2BQ02880 1626 aa31.03■■■□□ 2.56
PLOD3-209ENST00000460475 BIVM-ERCC5R4GMW8 1640 aa31.02■■■□□ 2.56
PLOD3-209ENST00000460475 AQRO60306 1485 aaKnown RBP eCLIP31■■■□□ 2.554e-10■■■■□ 23.3
PLOD3-209ENST00000460475 SYNJ1O43426 1573 aa30.99■■■□□ 2.55
PLOD3-209ENST00000460475 WDR97A6NE52 1622 aa30.98■■■□□ 2.55
PLOD3-209ENST00000460475 TDRD9Q8NDG6 1382 aaKnown RBP30.93■■■□□ 2.54
PLOD3-209ENST00000460475 ABCA10Q8WWZ4 1543 aa30.9■■■□□ 2.54
PLOD3-209ENST00000460475 OSCARQ8IYS5 282 aa30.79■■■□□ 2.52
PLOD3-209ENST00000460475 ABCA5Q8WWZ7 1642 aa30.76■■■□□ 2.52
PLOD3-209ENST00000460475 GRIN2BQ13224 1484 aa30.76■■■□□ 2.52
PLOD3-209ENST00000460475 GAPVD1Q14C86 1478 aa30.76■■■□□ 2.52
PLOD3-209ENST00000460475 SNAPC4Q5SXM2 1469 aa30.7■■■□□ 2.5
PLOD3-209ENST00000460475 MAGI1Q96QZ7 1491 aaPredicted RBP30.7■■■□□ 2.5
PLOD3-209ENST00000460475 PBRM1Q86U86 1689 aa30.68■■■□□ 2.5
PLOD3-209ENST00000460475 CHD1O14646 1710 aa30.66■■■□□ 2.5
PLOD3-209ENST00000460475 SYNJ2O15056 1496 aa30.57■■■□□ 2.48
PLOD3-209ENST00000460475 FBLN2P98095 1184 aa30.57■■■□□ 2.48
PLOD3-209ENST00000460475 CHMP7Q8WUX9 453 aaPredicted RBP30.53■■■□□ 2.48
PLOD3-209ENST00000460475 ERICH3Q5RHP9 1530 aa30.52■■■□□ 2.48
PLOD3-209ENST00000460475 ADAMTS12P58397 1594 aa30.45■■■□□ 2.46
PLOD3-209ENST00000460475 FHAD1B1AJZ9 1412 aa30.42■■■□□ 2.46
PLOD3-209ENST00000460475 KIF27Q86VH2 1401 aa30.42■■■□□ 2.46
PLOD3-209ENST00000460475 GRIN2AQ12879 1464 aa30.37■■■□□ 2.45
PLOD3-209ENST00000460475 CLASP1Q7Z460 1538 aa30.36■■■□□ 2.45
PLOD3-209ENST00000460475 IGF1RP08069 1367 aa30.34■■■□□ 2.45
PLOD3-209ENST00000460475 TRIM41Q8WV44 630 aa30.3■■■□□ 2.44
PLOD3-209ENST00000460475 ARHGEF11O15085 1522 aa30.28■■■□□ 2.44
PLOD3-209ENST00000460475 RIMBP3CA6NJZ7 1639 aa30.28■■■□□ 2.44
PLOD3-209ENST00000460475 RIMBP3BA6NNM3 1639 aa30.28■■■□□ 2.44
PLOD3-209ENST00000460475 RIMBP3Q9UFD9 1639 aa30.28■■■□□ 2.44
PLOD3-209ENST00000460475 NUP160Q12769 1436 aa30.26■■■□□ 2.43
PLOD3-209ENST00000460475 CUL7Q14999 1698 aa30.23■■■□□ 2.43
PLOD3-209ENST00000460475 CEP170Q5SW79 1584 aa30.21■■■□□ 2.43
PLOD3-209ENST00000460475 RUSC2Q8N2Y8 1516 aa30.13■■■□□ 2.41
PLOD3-209ENST00000460475 CARMIL1Q5VZK9 1371 aa30.13■■■□□ 2.41
PLOD3-209ENST00000460475 SHROOM2Q13796 1616 aa30.04■■■□□ 2.4
PLOD3-209ENST00000460475 ARAP1Q96P48 1450 aa30.04■■■□□ 2.4
PLOD3-209ENST00000460475 CYB5RLQ6IPT4 315 aa29.98■■■□□ 2.39
PLOD3-209ENST00000460475 CHIC1Q5VXU3 224 aa29.97■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms