RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 AEBP2Q6ZN18 517 aaPredicted RBP24.75■■□□□ 1.55
ATG4A-206ENST00000457035 NISCHQ9Y2I1 1504 aa24.19■■□□□ 1.46
ATG4A-206ENST00000457035 CHIC1Q5VXU3 224 aa23.85■■□□□ 1.41
ATG4A-206ENST00000457035 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
ATG4A-206ENST00000457035 ABCC9O60706 1549 aa21.16■□□□□ 0.98
ATG4A-206ENST00000457035 SENP3Q9H4L4 574 aaPredicted RBP21.07■□□□□ 0.96
ATG4A-206ENST00000457035 PHF23Q9BUL5 403 aaPredicted RBP20.93■□□□□ 0.94
ATG4A-206ENST00000457035 DCAF8L2P0C7V8 631 aa20.18■□□□□ 0.82
ATG4A-206ENST00000457035 ZCCHC6Q5VYS8 1495 aaKnown RBP20.15■□□□□ 0.82
ATG4A-206ENST00000457035 RB1CC1Q8TDY2 1594 aa20.12■□□□□ 0.81
ATG4A-206ENST00000457035 NACADO15069 1562 aa20.11■□□□□ 0.81
ATG4A-206ENST00000457035 MYO15BQ96JP2 1530 aa20.05■□□□□ 0.8
ATG4A-206ENST00000457035 DCAF1Q9Y4B6 1507 aa20.01■□□□□ 0.79
ATG4A-206ENST00000457035 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
ATG4A-206ENST00000457035 DNAJC5BQ9UF47 199 aa19.82■□□□□ 0.76
ATG4A-206ENST00000457035 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
ATG4A-206ENST00000457035 FOXD1Q16676 465 aa19.59■□□□□ 0.73
ATG4A-206ENST00000457035 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
ATG4A-206ENST00000457035 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
ATG4A-206ENST00000457035 SHROOM4Q9ULL8 1493 aa19.25■□□□□ 0.67
ATG4A-206ENST00000457035 PLPPR3Q6T4P5 718 aa19.21■□□□□ 0.67
ATG4A-206ENST00000457035 CC2D2AQ9P2K1 1620 aa19.14■□□□□ 0.66
ATG4A-206ENST00000457035 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
ATG4A-206ENST00000457035 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
ATG4A-206ENST00000457035 SMARCA4P51532 1647 aa18.72■□□□□ 0.59
ATG4A-206ENST00000457035 BAZ1AQ9NRL2 1556 aaPredicted RBP18.71■□□□□ 0.59
ATG4A-206ENST00000457035 MROH2BQ7Z745 1585 aa18.65■□□□□ 0.58
ATG4A-206ENST00000457035 ATAD2BQ9ULI0 1458 aa18.6■□□□□ 0.57
ATG4A-206ENST00000457035 NCAPD3P42695 1498 aa18.58■□□□□ 0.57
ATG4A-206ENST00000457035 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
ATG4A-206ENST00000457035 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
ATG4A-206ENST00000457035 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
ATG4A-206ENST00000457035 ADRA2BP18089 450 aa18.52■□□□□ 0.56
ATG4A-206ENST00000457035 RSF1Q96T23 1441 aaPredicted RBP18.49■□□□□ 0.55
ATG4A-206ENST00000457035 HMGXB3Q12766 1538 aa18.46■□□□□ 0.55
ATG4A-206ENST00000457035 WIZO95785 1651 aa18.46■□□□□ 0.55
ATG4A-206ENST00000457035 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
ATG4A-206ENST00000457035 PIAS4Q8N2W9 510 aaPredicted RBP18.36■□□□□ 0.53
ATG4A-206ENST00000457035 ERCC6Q03468 1493 aa18.27■□□□□ 0.52
ATG4A-206ENST00000457035 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
ATG4A-206ENST00000457035 MSH5O43196 834 aa18.22■□□□□ 0.51
ATG4A-206ENST00000457035 CUX2O14529 1486 aa18.2■□□□□ 0.5
ATG4A-206ENST00000457035 DNAJC5Q9H3Z4 198 aa18.2■□□□□ 0.5
ATG4A-206ENST00000457035 NESP48681 1621 aa18.16■□□□□ 0.5
ATG4A-206ENST00000457035 SUPT5HO00267 1087 aaKnown RBP18.14■□□□□ 0.49
ATG4A-206ENST00000457035 CCDC88BA6NC98 1476 aa18.07■□□□□ 0.48
ATG4A-206ENST00000457035 CADPSQ9ULU8 1353 aa18.05■□□□□ 0.48
ATG4A-206ENST00000457035 KIF21AQ7Z4S6 1674 aa18.04■□□□□ 0.48
ATG4A-206ENST00000457035 LAMC3Q9Y6N6 1575 aa18.04■□□□□ 0.48
ATG4A-206ENST00000457035 THOC2Q8NI27 1593 aaKnown RBP18.03■□□□□ 0.48
ATG4A-206ENST00000457035 CFTRP13569 1480 aa17.96■□□□□ 0.47
ATG4A-206ENST00000457035 PDS5BQ9NTI5 1447 aa17.92■□□□□ 0.46
ATG4A-206ENST00000457035 PRDM2Q13029 1718 aa17.82■□□□□ 0.44
ATG4A-206ENST00000457035 FANCD2Q9BXW9 1451 aa17.81■□□□□ 0.44
ATG4A-206ENST00000457035 MRC2Q9UBG0 1479 aa17.75■□□□□ 0.43
ATG4A-206ENST00000457035 CEP164Q9UPV0 1460 aa17.75■□□□□ 0.43
ATG4A-206ENST00000457035 WDR62O43379 1518 aa17.72■□□□□ 0.43
ATG4A-206ENST00000457035 URB2Q14146 1524 aaKnown RBP17.64■□□□□ 0.41
ATG4A-206ENST00000457035 ABCC8Q09428 1581 aa17.55■□□□□ 0.4
ATG4A-206ENST00000457035 TOPBP1Q92547 1522 aa17.55■□□□□ 0.4
ATG4A-206ENST00000457035 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.39
ATG4A-206ENST00000457035 TRIM41Q8WV44 630 aa17.49■□□□□ 0.39
ATG4A-206ENST00000457035 CUX1P39880 1505 aa17.47■□□□□ 0.39
ATG4A-206ENST00000457035 POLA1P09884 1462 aaPredicted RBP17.41■□□□□ 0.38
ATG4A-206ENST00000457035 WRNQ14191 1432 aaPredicted RBP eCLIP17.4■□□□□ 0.38
ATG4A-206ENST00000457035 IFT140Q96RY7 1462 aa17.39■□□□□ 0.37
ATG4A-206ENST00000457035 FGD5Q6ZNL6 1462 aa17.37■□□□□ 0.37
ATG4A-206ENST00000457035 SOGA1O94964 1423 aa17.36■□□□□ 0.37
ATG4A-206ENST00000457035 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
ATG4A-206ENST00000457035 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
ATG4A-206ENST00000457035 TOP2BQ02880 1626 aa17.36■□□□□ 0.37
ATG4A-206ENST00000457035 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
ATG4A-206ENST00000457035 BIVM-ERCC5R4GMW8 1640 aa17.35■□□□□ 0.37
ATG4A-206ENST00000457035 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
ATG4A-206ENST00000457035 ZNF608Q9ULD9 1512 aaPredicted RBP17.33■□□□□ 0.37
ATG4A-206ENST00000457035 EIF4G3O43432 1585 aaKnown RBP17.28■□□□□ 0.36
ATG4A-206ENST00000457035 AQRO60306 1485 aaKnown RBP eCLIP17.26■□□□□ 0.35
ATG4A-206ENST00000457035 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
ATG4A-206ENST00000457035 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
ATG4A-206ENST00000457035 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
ATG4A-206ENST00000457035 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
ATG4A-206ENST00000457035 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
ATG4A-206ENST00000457035 CHD1O14646 1710 aa17.23■□□□□ 0.35
ATG4A-206ENST00000457035 WDR97A6NE52 1622 aa17.22■□□□□ 0.35
ATG4A-206ENST00000457035 POTEDQ86YR6 584 aa17.19■□□□□ 0.34
ATG4A-206ENST00000457035 GAPVD1Q14C86 1478 aa17.14■□□□□ 0.33
ATG4A-206ENST00000457035 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
ATG4A-206ENST00000457035 ABCA5Q8WWZ7 1642 aa17.13■□□□□ 0.33
ATG4A-206ENST00000457035 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
ATG4A-206ENST00000457035 PBRM1Q86U86 1689 aa17.08■□□□□ 0.32
ATG4A-206ENST00000457035 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
ATG4A-206ENST00000457035 FBLN2P98095 1184 aa17.05■□□□□ 0.32
ATG4A-206ENST00000457035 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
ATG4A-206ENST00000457035 KIF27Q86VH2 1401 aa17.03■□□□□ 0.32
ATG4A-206ENST00000457035 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
ATG4A-206ENST00000457035 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
ATG4A-206ENST00000457035 IGF1RP08069 1367 aa17■□□□□ 0.31
ATG4A-206ENST00000457035 SCAF1Q9H7N4 1312 aaKnown RBP16.99■□□□□ 0.31
ATG4A-206ENST00000457035 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
ATG4A-206ENST00000457035 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms