RNA–Protein interactions for RNA: ENST00000455659.1

COMMD1-205, Transcript of copper metabolism domain containing 1, humanhuman

TSL 3

Gene COMMD1, Length 388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD1-205ENST00000455659 NISCHQ9Y2I1 1504 aa17.23■□□□□ 0.35
COMMD1-205ENST00000455659 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
COMMD1-205ENST00000455659 ABCC9O60706 1549 aa14.94□□□□□ -0.02
COMMD1-205ENST00000455659 RB1CC1Q8TDY2 1594 aa14.44□□□□□ -0.1
COMMD1-205ENST00000455659 ZCCHC6Q5VYS8 1495 aaKnown RBP14.42□□□□□ -0.1
COMMD1-205ENST00000455659 NACADO15069 1562 aa14.41□□□□□ -0.1
COMMD1-205ENST00000455659 MYO15BQ96JP2 1530 aa14.32□□□□□ -0.12
COMMD1-205ENST00000455659 DCAF1Q9Y4B6 1507 aa14.28□□□□□ -0.12
COMMD1-205ENST00000455659 DCAF8L2P0C7V8 631 aa14.24□□□□□ -0.13
COMMD1-205ENST00000455659 UNC13AQ9UPW8 1703 aa14.19□□□□□ -0.14
COMMD1-205ENST00000455659 SCRIBQ14160 1630 aa14.05□□□□□ -0.16
COMMD1-205ENST00000455659 BICRAQ9NZM4 1560 aa13.98□□□□□ -0.17
COMMD1-205ENST00000455659 SHROOM4Q9ULL8 1493 aa13.88□□□□□ -0.19
COMMD1-205ENST00000455659 PABPN1Q86U42 306 aaKnown RBP eCLIP13.87□□□□□ -0.19
COMMD1-205ENST00000455659 EIF4G1Q04637 1599 aaKnown RBP13.63□□□□□ -0.23
COMMD1-205ENST00000455659 CC2D2AQ9P2K1 1620 aa13.56□□□□□ -0.24
COMMD1-205ENST00000455659 DNAJC5BQ9UF47 199 aa13.52□□□□□ -0.25
COMMD1-205ENST00000455659 SMARCA4P51532 1647 aa13.43□□□□□ -0.26
COMMD1-205ENST00000455659 CECR2Q9BXF3 1484 aa13.42□□□□□ -0.26
COMMD1-205ENST00000455659 BAZ1AQ9NRL2 1556 aaPredicted RBP13.4□□□□□ -0.26
COMMD1-205ENST00000455659 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
COMMD1-205ENST00000455659 MROH2BQ7Z745 1585 aa13.28□□□□□ -0.28
COMMD1-205ENST00000455659 HMGXB3Q12766 1538 aa13.28□□□□□ -0.28
COMMD1-205ENST00000455659 PEG3Q9GZU2 1588 aa13.28□□□□□ -0.28
COMMD1-205ENST00000455659 ATAD2BQ9ULI0 1458 aa13.27□□□□□ -0.29
COMMD1-205ENST00000455659 NCAPD3P42695 1498 aa13.23□□□□□ -0.29
COMMD1-205ENST00000455659 BAZ1BQ9UIG0 1483 aaKnown RBP13.21□□□□□ -0.3
COMMD1-205ENST00000455659 WIZO95785 1651 aa13.18□□□□□ -0.3
COMMD1-205ENST00000455659 RSF1Q96T23 1441 aaPredicted RBP13.11□□□□□ -0.31
COMMD1-205ENST00000455659 TOP2AP11388 1531 aaKnown RBP13.06□□□□□ -0.32
COMMD1-205ENST00000455659 LAMC3Q9Y6N6 1575 aa12.96□□□□□ -0.33
COMMD1-205ENST00000455659 NESP48681 1621 aa12.94□□□□□ -0.34
COMMD1-205ENST00000455659 ERCC6Q03468 1493 aa12.91□□□□□ -0.34
COMMD1-205ENST00000455659 PRDM2Q13029 1718 aa12.89□□□□□ -0.35
COMMD1-205ENST00000455659 KIF21AQ7Z4S6 1674 aa12.89□□□□□ -0.35
COMMD1-205ENST00000455659 CADPSQ9ULU8 1353 aa12.83□□□□□ -0.36
COMMD1-205ENST00000455659 THOC2Q8NI27 1593 aaKnown RBP12.83□□□□□ -0.36
COMMD1-205ENST00000455659 CCDC88BA6NC98 1476 aa12.81□□□□□ -0.36
COMMD1-205ENST00000455659 PDS5BQ9NTI5 1447 aa12.8□□□□□ -0.36
COMMD1-205ENST00000455659 CFTRP13569 1480 aa12.8□□□□□ -0.36
COMMD1-205ENST00000455659 CEP164Q9UPV0 1460 aa12.76□□□□□ -0.37
COMMD1-205ENST00000455659 CUX2O14529 1486 aa12.75□□□□□ -0.37
COMMD1-205ENST00000455659 FANCD2Q9BXW9 1451 aa12.75□□□□□ -0.37
COMMD1-205ENST00000455659 SUPT5HO00267 1087 aaKnown RBP12.73□□□□□ -0.37
COMMD1-205ENST00000455659 MRC2Q9UBG0 1479 aa12.72□□□□□ -0.37
COMMD1-205ENST00000455659 WDR62O43379 1518 aa12.71□□□□□ -0.38
COMMD1-205ENST00000455659 URB2Q14146 1524 aaKnown RBP12.62□□□□□ -0.39
COMMD1-205ENST00000455659 DNMBPQ6XZF7 1577 aa12.59□□□□□ -0.39
COMMD1-205ENST00000455659 TOPBP1Q92547 1522 aa12.56□□□□□ -0.4
COMMD1-205ENST00000455659 ABCC8Q09428 1581 aa12.52□□□□□ -0.4
COMMD1-205ENST00000455659 CUX1P39880 1505 aa12.48□□□□□ -0.41
COMMD1-205ENST00000455659 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.42
COMMD1-205ENST00000455659 IFT140Q96RY7 1462 aa12.46□□□□□ -0.42
COMMD1-205ENST00000455659 EIF4G3O43432 1585 aaKnown RBP12.44□□□□□ -0.42
COMMD1-205ENST00000455659 FGD5Q6ZNL6 1462 aa12.44□□□□□ -0.42
COMMD1-205ENST00000455659 TARBP1Q13395 1621 aaKnown RBP12.44□□□□□ -0.42
COMMD1-205ENST00000455659 BIVM-ERCC5R4GMW8 1640 aa12.44□□□□□ -0.42
COMMD1-205ENST00000455659 WDR97A6NE52 1622 aa12.43□□□□□ -0.42
COMMD1-205ENST00000455659 SYNJ1O43426 1573 aa12.42□□□□□ -0.42
COMMD1-205ENST00000455659 TOP2BQ02880 1626 aa12.4□□□□□ -0.42
COMMD1-205ENST00000455659 ZNF608Q9ULD9 1512 aaPredicted RBP12.39□□□□□ -0.43
COMMD1-205ENST00000455659 WRNQ14191 1432 aaPredicted RBP eCLIP12.38□□□□□ -0.43
COMMD1-205ENST00000455659 RAD54L2Q9Y4B4 1467 aa12.36□□□□□ -0.43
COMMD1-205ENST00000455659 PBRM1Q86U86 1689 aa12.34□□□□□ -0.43
COMMD1-205ENST00000455659 SOGA1O94964 1423 aa12.33□□□□□ -0.44
COMMD1-205ENST00000455659 ABCA5Q8WWZ7 1642 aa12.33□□□□□ -0.44
COMMD1-205ENST00000455659 ABCA10Q8WWZ4 1543 aa12.31□□□□□ -0.44
COMMD1-205ENST00000455659 CHD1O14646 1710 aa12.29□□□□□ -0.44
COMMD1-205ENST00000455659 AQRO60306 1485 aaKnown RBP eCLIP12.28□□□□□ -0.44
COMMD1-205ENST00000455659 SNAPC4Q5SXM2 1469 aa12.26□□□□□ -0.45
COMMD1-205ENST00000455659 TDRD9Q8NDG6 1382 aaKnown RBP12.25□□□□□ -0.45
COMMD1-205ENST00000455659 GRIN2BQ13224 1484 aa12.24□□□□□ -0.45
COMMD1-205ENST00000455659 GAPVD1Q14C86 1478 aa12.24□□□□□ -0.45
COMMD1-205ENST00000455659 MAGI1Q96QZ7 1491 aaPredicted RBP12.23□□□□□ -0.45
COMMD1-205ENST00000455659 ADAMTS12P58397 1594 aa12.22□□□□□ -0.45
COMMD1-205ENST00000455659 ERICH3Q5RHP9 1530 aa12.17□□□□□ -0.46
COMMD1-205ENST00000455659 SYNJ2O15056 1496 aa12.16□□□□□ -0.46
COMMD1-205ENST00000455659 DNAJC5Q9H3Z4 198 aa12.16□□□□□ -0.46
COMMD1-205ENST00000455659 CUL7Q14999 1698 aa12.13□□□□□ -0.47
COMMD1-205ENST00000455659 KIF27Q86VH2 1401 aa12.12□□□□□ -0.47
COMMD1-205ENST00000455659 CLASP1Q7Z460 1538 aa12.11□□□□□ -0.47
COMMD1-205ENST00000455659 GRIN2AQ12879 1464 aa12.1□□□□□ -0.47
COMMD1-205ENST00000455659 FBLN2P98095 1184 aa12.09□□□□□ -0.47
COMMD1-205ENST00000455659 FHAD1B1AJZ9 1412 aa12.09□□□□□ -0.47
COMMD1-205ENST00000455659 OSCARQ8IYS5 282 aa12.08□□□□□ -0.48
COMMD1-205ENST00000455659 CEP170Q5SW79 1584 aa12.07□□□□□ -0.48
COMMD1-205ENST00000455659 RIMBP3CA6NJZ7 1639 aa12.06□□□□□ -0.48
COMMD1-205ENST00000455659 RIMBP3BA6NNM3 1639 aa12.06□□□□□ -0.48
COMMD1-205ENST00000455659 RIMBP3Q9UFD9 1639 aa12.06□□□□□ -0.48
COMMD1-205ENST00000455659 CHMP7Q8WUX9 453 aaPredicted RBP12.05□□□□□ -0.48
COMMD1-205ENST00000455659 ARHGEF11O15085 1522 aa12.05□□□□□ -0.48
COMMD1-205ENST00000455659 RUSC2Q8N2Y8 1516 aa12.05□□□□□ -0.48
COMMD1-205ENST00000455659 NUP160Q12769 1436 aa12.03□□□□□ -0.48
COMMD1-205ENST00000455659 TRIM41Q8WV44 630 aa12.02□□□□□ -0.49
COMMD1-205ENST00000455659 SHROOM2Q13796 1616 aa11.99□□□□□ -0.49
COMMD1-205ENST00000455659 IGF1RP08069 1367 aa11.98□□□□□ -0.49
COMMD1-205ENST00000455659 CTTNBP2Q8WZ74 1663 aa11.95□□□□□ -0.5
COMMD1-205ENST00000455659 ARAP1Q96P48 1450 aa11.95□□□□□ -0.5
COMMD1-205ENST00000455659 CARMIL1Q5VZK9 1371 aa11.94□□□□□ -0.5
COMMD1-205ENST00000455659 RAPGEF2Q9Y4G8 1499 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms