RNA–Protein interactions for RNA: ENST00000454252.1

CHEK2-220, Transcript of checkpoint kinase 2, humanhuman

TSL 3

Gene CHEK2, Length 722 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHEK2-220ENST00000454252 NISCHQ9Y2I1 1504 aa17.88■□□□□ 0.45
CHEK2-220ENST00000454252 ABCC9O60706 1549 aa16.39■□□□□ 0.21
CHEK2-220ENST00000454252 CCDC180Q9P1Z9 1646 aa15.99■□□□□ 0.15
CHEK2-220ENST00000454252 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
CHEK2-220ENST00000454252 RB1CC1Q8TDY2 1594 aa15.36■□□□□ 0.05
CHEK2-220ENST00000454252 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
CHEK2-220ENST00000454252 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
CHEK2-220ENST00000454252 NACADO15069 1562 aa15.21■□□□□ 0.03
CHEK2-220ENST00000454252 BICRAQ9NZM4 1560 aa15□□□□□ -0.01
CHEK2-220ENST00000454252 UNC13AQ9UPW8 1703 aa14.97□□□□□ -0.01
CHEK2-220ENST00000454252 MYO15BQ96JP2 1530 aa14.92□□□□□ -0.02
CHEK2-220ENST00000454252 ZCCHC6Q5VYS8 1495 aaKnown RBP14.8□□□□□ -0.04
CHEK2-220ENST00000454252 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
CHEK2-220ENST00000454252 SCRIBQ14160 1630 aa14.73□□□□□ -0.05
CHEK2-220ENST00000454252 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
CHEK2-220ENST00000454252 DCAF1Q9Y4B6 1507 aa14.67□□□□□ -0.06
CHEK2-220ENST00000454252 SHROOM4Q9ULL8 1493 aa14.65□□□□□ -0.06
CHEK2-220ENST00000454252 EIF4G1Q04637 1599 aaKnown RBP14.64□□□□□ -0.07
CHEK2-220ENST00000454252 DNAJC5Q9H3Z4 198 aa14.34□□□□□ -0.11
CHEK2-220ENST00000454252 NCAPD3P42695 1498 aa14.11□□□□□ -0.15
CHEK2-220ENST00000454252 ERCC6Q03468 1493 aa14.11□□□□□ -0.15
CHEK2-220ENST00000454252 ATAD2BQ9ULI0 1458 aa14.08□□□□□ -0.16
CHEK2-220ENST00000454252 CUX2O14529 1486 aa14.07□□□□□ -0.16
CHEK2-220ENST00000454252 NESP48681 1621 aa14.04□□□□□ -0.16
CHEK2-220ENST00000454252 SMARCA4P51532 1647 aa13.97□□□□□ -0.17
CHEK2-220ENST00000454252 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
CHEK2-220ENST00000454252 SMARCA2P51531 1590 aa13.94□□□□□ -0.18
CHEK2-220ENST00000454252 BAZ1BQ9UIG0 1483 aaKnown RBP13.91□□□□□ -0.18
CHEK2-220ENST00000454252 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
CHEK2-220ENST00000454252 MROH2BQ7Z745 1585 aa13.83□□□□□ -0.19
CHEK2-220ENST00000454252 THOC2Q8NI27 1593 aaKnown RBP13.83□□□□□ -0.19
CHEK2-220ENST00000454252 AEBP2Q6ZN18 517 aaPredicted RBP13.83□□□□□ -0.2
CHEK2-220ENST00000454252 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
CHEK2-220ENST00000454252 LAMC3Q9Y6N6 1575 aa13.75□□□□□ -0.21
CHEK2-220ENST00000454252 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
CHEK2-220ENST00000454252 PDS5BQ9NTI5 1447 aa13.73□□□□□ -0.21
CHEK2-220ENST00000454252 KIF21AQ7Z4S6 1674 aa13.72□□□□□ -0.21
CHEK2-220ENST00000454252 CADPSQ9ULU8 1353 aa13.7□□□□□ -0.22
CHEK2-220ENST00000454252 MRC2Q9UBG0 1479 aa13.65□□□□□ -0.22
CHEK2-220ENST00000454252 WIZO95785 1651 aa13.62□□□□□ -0.23
CHEK2-220ENST00000454252 WDR62O43379 1518 aa13.6□□□□□ -0.23
CHEK2-220ENST00000454252 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
CHEK2-220ENST00000454252 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
CHEK2-220ENST00000454252 CFTRP13569 1480 aa13.49□□□□□ -0.25
CHEK2-220ENST00000454252 RSF1Q96T23 1441 aaPredicted RBP13.48□□□□□ -0.25
CHEK2-220ENST00000454252 URB2Q14146 1524 aaKnown RBP13.47□□□□□ -0.25
CHEK2-220ENST00000454252 OSCARQ8IYS5 282 aa13.45□□□□□ -0.26
CHEK2-220ENST00000454252 TOP2AP11388 1531 aaKnown RBP13.41□□□□□ -0.26
CHEK2-220ENST00000454252 ZNF608Q9ULD9 1512 aaPredicted RBP13.38□□□□□ -0.27
CHEK2-220ENST00000454252 CCDC88BA6NC98 1476 aa13.32□□□□□ -0.28
CHEK2-220ENST00000454252 IFT140Q96RY7 1462 aa13.28□□□□□ -0.28
CHEK2-220ENST00000454252 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
CHEK2-220ENST00000454252 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
CHEK2-220ENST00000454252 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
CHEK2-220ENST00000454252 TOPBP1Q92547 1522 aa13.27□□□□□ -0.29
CHEK2-220ENST00000454252 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
CHEK2-220ENST00000454252 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.29
CHEK2-220ENST00000454252 CYB5RLQ6IPT4 315 aa13.22□□□□□ -0.29
CHEK2-220ENST00000454252 EIF4G3O43432 1585 aaKnown RBP13.2□□□□□ -0.3
CHEK2-220ENST00000454252 FBLN2P98095 1184 aa13.18□□□□□ -0.3
CHEK2-220ENST00000454252 DNMBPQ6XZF7 1577 aa13.15□□□□□ -0.3
CHEK2-220ENST00000454252 PRDM2Q13029 1718 aa13.15□□□□□ -0.3
CHEK2-220ENST00000454252 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.3
CHEK2-220ENST00000454252 POLA1P09884 1462 aaPredicted RBP13.14□□□□□ -0.31
CHEK2-220ENST00000454252 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
CHEK2-220ENST00000454252 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
CHEK2-220ENST00000454252 TDRD9Q8NDG6 1382 aaKnown RBP13.12□□□□□ -0.31
CHEK2-220ENST00000454252 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
CHEK2-220ENST00000454252 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
CHEK2-220ENST00000454252 CHD1O14646 1710 aa13.08□□□□□ -0.32
CHEK2-220ENST00000454252 SOGA1O94964 1423 aa13.06□□□□□ -0.32
CHEK2-220ENST00000454252 SNAPC4Q5SXM2 1469 aa13.05□□□□□ -0.32
CHEK2-220ENST00000454252 FGD5Q6ZNL6 1462 aa13.03□□□□□ -0.32
CHEK2-220ENST00000454252 CUX1P39880 1505 aa13□□□□□ -0.33
CHEK2-220ENST00000454252 CHMP7Q8WUX9 453 aaPredicted RBP13□□□□□ -0.33
CHEK2-220ENST00000454252 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
CHEK2-220ENST00000454252 GRIN2BQ13224 1484 aa12.94□□□□□ -0.34
CHEK2-220ENST00000454252 CHIC1Q5VXU3 224 aa12.94□□□□□ -0.34
CHEK2-220ENST00000454252 MAGI1Q96QZ7 1491 aaPredicted RBP12.93□□□□□ -0.34
CHEK2-220ENST00000454252 SYNJ2O15056 1496 aa12.92□□□□□ -0.34
CHEK2-220ENST00000454252 SYNJ1O43426 1573 aa12.9□□□□□ -0.34
CHEK2-220ENST00000454252 GAPVD1Q14C86 1478 aa12.89□□□□□ -0.35
CHEK2-220ENST00000454252 WDR97A6NE52 1622 aa12.86□□□□□ -0.35
CHEK2-220ENST00000454252 ERCC6L2Q5T890 1561 aa12.86□□□□□ -0.35
CHEK2-220ENST00000454252 ABCA10Q8WWZ4 1543 aa12.83□□□□□ -0.35
CHEK2-220ENST00000454252 SUPT5HO00267 1087 aaKnown RBP12.83□□□□□ -0.36
CHEK2-220ENST00000454252 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
CHEK2-220ENST00000454252 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
CHEK2-220ENST00000454252 GRIN2AQ12879 1464 aa12.79□□□□□ -0.36
CHEK2-220ENST00000454252 CEP170Q5SW79 1584 aa12.77□□□□□ -0.37
CHEK2-220ENST00000454252 NUP160Q12769 1436 aa12.76□□□□□ -0.37
CHEK2-220ENST00000454252 ADAMTS12P58397 1594 aa12.75□□□□□ -0.37
CHEK2-220ENST00000454252 WRNQ14191 1432 aaPredicted RBP eCLIP12.75□□□□□ -0.37
CHEK2-220ENST00000454252 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
CHEK2-220ENST00000454252 PRG4Q92954 1404 aaPredicted RBP12.68□□□□□ -0.38
CHEK2-220ENST00000454252 TOP2BQ02880 1626 aa12.66□□□□□ -0.38
CHEK2-220ENST00000454252 SHROOM2Q13796 1616 aa12.66□□□□□ -0.38
CHEK2-220ENST00000454252 JPH4Q96JJ6 628 aa12.64□□□□□ -0.39
CHEK2-220ENST00000454252 ERICH3Q5RHP9 1530 aa12.63□□□□□ -0.39
CHEK2-220ENST00000454252 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms