RNA–Protein interactions for RNA: ENST00000453297.5

MCF2L-219, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 1,819 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-219ENST00000453297 NISCHQ9Y2I1 1504 aa55.43■■■■■ 6.46
MCF2L-219ENST00000453297 CCDC180Q9P1Z9 1646 aa48.27■■■■■ 5.32
MCF2L-219ENST00000453297 ZCCHC6Q5VYS8 1495 aaKnown RBP46.58■■■■■ 5.05
MCF2L-219ENST00000453297 DCAF1Q9Y4B6 1507 aa45.81■■■■■ 4.92
MCF2L-219ENST00000453297 DCAF8L2P0C7V8 631 aa45.75■■■■■ 4.91
MCF2L-219ENST00000453297 ABCC9O60706 1549 aa45.54■■■■■ 4.88
MCF2L-219ENST00000453297 SHROOM4Q9ULL8 1493 aa45.33■■■■■ 4.85
MCF2L-219ENST00000453297 MYO15BQ96JP2 1530 aa45.2■■■■■ 4.83
MCF2L-219ENST00000453297 NACADO15069 1562 aa44.91■■■■■ 4.78
MCF2L-219ENST00000453297 RB1CC1Q8TDY2 1594 aa44.5■■■■■ 4.71
MCF2L-219ENST00000453297 SCRIBQ14160 1630 aa44.43■■■■■ 4.7
MCF2L-219ENST00000453297 UNC13AQ9UPW8 1703 aa43.69■■■■■ 4.58
MCF2L-219ENST00000453297 SUPT5HO00267 1087 aaKnown RBP43.69■■■■■ 4.58
MCF2L-219ENST00000453297 BICRAQ9NZM4 1560 aa43.2■■■■■ 4.51
MCF2L-219ENST00000453297 CECR2Q9BXF3 1484 aa43.08■■■■■ 4.49
MCF2L-219ENST00000453297 RSF1Q96T23 1441 aaPredicted RBP43.06■■■■■ 4.48
MCF2L-219ENST00000453297 PABPN1Q86U42 306 aaKnown RBP eCLIP42.97■■■■■ 4.471e-6■■■□□ 18.4
MCF2L-219ENST00000453297 MROH2BQ7Z745 1585 aa42.85■■■■■ 4.45
MCF2L-219ENST00000453297 BAZ1AQ9NRL2 1556 aaPredicted RBP42.78■■■■■ 4.44
MCF2L-219ENST00000453297 SMARCA4P51532 1647 aa42.59■■■■■ 4.41
MCF2L-219ENST00000453297 WIZO95785 1651 aa42.53■■■■■ 4.4
MCF2L-219ENST00000453297 TOP2AP11388 1531 aaKnown RBP42.05■■■■■ 4.32
MCF2L-219ENST00000453297 PEG3Q9GZU2 1588 aa42.05■■■■■ 4.32
MCF2L-219ENST00000453297 CHIC1Q5VXU3 224 aa41.9■■■■■ 4.3
MCF2L-219ENST00000453297 EIF4G1Q04637 1599 aaKnown RBP41.86■■■■■ 4.29
MCF2L-219ENST00000453297 ATAD2BQ9ULI0 1458 aa41.84■■■■■ 4.29
MCF2L-219ENST00000453297 SMARCA2P51531 1590 aa41.81■■■■■ 4.28
MCF2L-219ENST00000453297 CCDC88BA6NC98 1476 aa41.64■■■■■ 4.26
MCF2L-219ENST00000453297 BAZ1BQ9UIG0 1483 aaKnown RBP41.61■■■■■ 4.25
MCF2L-219ENST00000453297 NCAPD3P42695 1498 aa41.45■■■■■ 4.23
MCF2L-219ENST00000453297 HMGXB3Q12766 1538 aa41.4■■■■■ 4.22
MCF2L-219ENST00000453297 CC2D2AQ9P2K1 1620 aa41.22■■■■■ 4.19
MCF2L-219ENST00000453297 TRIM41Q8WV44 630 aa41.05■■■■■ 4.16
MCF2L-219ENST00000453297 ABCC8Q09428 1581 aa40.83■■■■■ 4.13
MCF2L-219ENST00000453297 CFTRP13569 1480 aa40.57■■■■■ 4.09
MCF2L-219ENST00000453297 WRNQ14191 1432 aaPredicted RBP eCLIP40.51■■■■■ 4.08
MCF2L-219ENST00000453297 PRDM2Q13029 1718 aa40.42■■■■■ 4.06
MCF2L-219ENST00000453297 CADPSQ9ULU8 1353 aa40.4■■■■■ 4.06
MCF2L-219ENST00000453297 SYNJ1O43426 1573 aa40.37■■■■■ 4.05
MCF2L-219ENST00000453297 FAM9AQ8IZU1 332 aaPredicted RBP40.33■■■■■ 4.05
MCF2L-219ENST00000453297 LOC105371045A0A1W2PR82 267 aa40.32■■■■■ 4.05
MCF2L-219ENST00000453297 TOP2BQ02880 1626 aa40.19■■■■■ 4.02
MCF2L-219ENST00000453297 DNAJC5BQ9UF47 199 aa40.16■■■■■ 4.02
MCF2L-219ENST00000453297 BIVM-ERCC5R4GMW8 1640 aa40.15■■■■■ 4.02
MCF2L-219ENST00000453297 SOGA1O94964 1423 aa40.07■■■■■ 4.01
MCF2L-219ENST00000453297 CUX1P39880 1505 aa40.05■■■■■ 4
MCF2L-219ENST00000453297 NESP48681 1621 aa40.04■■■■■ 4
MCF2L-219ENST00000453297 LAMC3Q9Y6N6 1575 aa40.02■■■■■ 4
MCF2L-219ENST00000453297 EEA1Q15075 1411 aa39.99■■■■□ 3.99
MCF2L-219ENST00000453297 FANCD2Q9BXW9 1451 aa39.96■■■■□ 3.99
MCF2L-219ENST00000453297 RUSC2Q8N2Y8 1516 aa39.95■■■■□ 3.99
MCF2L-219ENST00000453297 CSRNP3Q8WYN3 585 aa39.79■■■■□ 3.96
MCF2L-219ENST00000453297 EHMT2Q96KQ7 1210 aa39.77■■■■□ 3.96
MCF2L-219ENST00000453297 PDS5BQ9NTI5 1447 aa39.69■■■■□ 3.94
MCF2L-219ENST00000453297 CEP164Q9UPV0 1460 aa39.69■■■■□ 3.94
MCF2L-219ENST00000453297 DNMBPQ6XZF7 1577 aa39.64■■■■□ 3.94
MCF2L-219ENST00000453297 FGD5Q6ZNL6 1462 aa39.59■■■■□ 3.93
MCF2L-219ENST00000453297 KIF21AQ7Z4S6 1674 aa39.58■■■■□ 3.93
MCF2L-219ENST00000453297 TOPBP1Q92547 1522 aa39.56■■■■□ 3.92
MCF2L-219ENST00000453297 KIF21BO75037 1637 aa39.49■■■■□ 3.91
MCF2L-219ENST00000453297 URB2Q14146 1524 aaKnown RBP39.47■■■■□ 3.91
MCF2L-219ENST00000453297 KIF27Q86VH2 1401 aa39.46■■■■□ 3.91
MCF2L-219ENST00000453297 GOLGA3Q08378 1498 aa39.46■■■■□ 3.91
MCF2L-219ENST00000453297 POLA1P09884 1462 aaPredicted RBP39.37■■■■□ 3.89
MCF2L-219ENST00000453297 TNIKQ9UKE5 1360 aa39.37■■■■□ 3.89
MCF2L-219ENST00000453297 CUX2O14529 1486 aa39.35■■■■□ 3.89
MCF2L-219ENST00000453297 UBTFP17480 764 aaKnown RBP39.28■■■■□ 3.88
MCF2L-219ENST00000453297 RAD54L2Q9Y4B4 1467 aa39.27■■■■□ 3.88
MCF2L-219ENST00000453297 PRXQ9BXM0 1461 aa39.25■■■■□ 3.87
MCF2L-219ENST00000453297 RAPGEF2Q9Y4G8 1499 aa39.25■■■■□ 3.87
MCF2L-219ENST00000453297 ABCA10Q8WWZ4 1543 aa39.22■■■■□ 3.87
MCF2L-219ENST00000453297 ERICH3Q5RHP9 1530 aa39.19■■■■□ 3.86
MCF2L-219ENST00000453297 MRC2Q9UBG0 1479 aa39.19■■■■□ 3.86
MCF2L-219ENST00000453297 CEP162Q5TB80 1403 aa39.17■■■■□ 3.86
MCF2L-219ENST00000453297 WDR97A6NE52 1622 aa39.12■■■■□ 3.85
MCF2L-219ENST00000453297 IGF1RP08069 1367 aa39.12■■■■□ 3.85
MCF2L-219ENST00000453297 ERCC6Q03468 1493 aa39■■■■□ 3.83
MCF2L-219ENST00000453297 WDR62O43379 1518 aa38.98■■■■□ 3.83
MCF2L-219ENST00000453297 TARBP1Q13395 1621 aaKnown RBP38.97■■■■□ 3.83
MCF2L-219ENST00000453297 CARMIL1Q5VZK9 1371 aa38.92■■■■□ 3.82
MCF2L-219ENST00000453297 ABCA5Q8WWZ7 1642 aa38.91■■■■□ 3.82
MCF2L-219ENST00000453297 THOC2Q8NI27 1593 aaKnown RBP38.86■■■■□ 3.81
MCF2L-219ENST00000453297 TDRD9Q8NDG6 1382 aaKnown RBP38.86■■■■□ 3.81
MCF2L-219ENST00000453297 CLIP1P30622 1438 aa38.83■■■■□ 3.81
MCF2L-219ENST00000453297 GAPVD1Q14C86 1478 aa38.81■■■■□ 3.8
MCF2L-219ENST00000453297 CUL7Q14999 1698 aa38.81■■■■□ 3.8
MCF2L-219ENST00000453297 IFT140Q96RY7 1462 aa38.72■■■■□ 3.79
MCF2L-219ENST00000453297 RANGAP1P46060 587 aaPredicted RBP38.63■■■■□ 3.77
MCF2L-219ENST00000453297 PBRM1Q86U86 1689 aa38.62■■■■□ 3.77
MCF2L-219ENST00000453297 AQRO60306 1485 aaKnown RBP eCLIP38.59■■■■□ 3.77
MCF2L-219ENST00000453297 PCGF6Q9BYE7 350 aa38.59■■■■□ 3.77
MCF2L-219ENST00000453297 TRIM26Q12899 539 aaPredicted RBP38.55■■■■□ 3.76
MCF2L-219ENST00000453297 ZNF608Q9ULD9 1512 aaPredicted RBP38.54■■■■□ 3.76
MCF2L-219ENST00000453297 VPS8Q8N3P4 1428 aa38.51■■■■□ 3.76
MCF2L-219ENST00000453297 GRIN2BQ13224 1484 aa38.48■■■■□ 3.75
MCF2L-219ENST00000453297 ARAP1Q96P48 1450 aa38.46■■■■□ 3.75
MCF2L-219ENST00000453297 CTTNBP2Q8WZ74 1663 aa38.43■■■■□ 3.74
MCF2L-219ENST00000453297 ARHGAP35Q9NRY4 1499 aa38.43■■■■□ 3.74
MCF2L-219ENST00000453297 PPARGC1BQ86YN6 1023 aaKnown RBP38.42■■■■□ 3.74
MCF2L-219ENST00000453297 EIF4G3O43432 1585 aaKnown RBP38.41■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms