RNA–Protein interactions for RNA: ENST00000451070.1

LINC01238-204, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 4

Gene LINC01238, Length 599 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-204ENST00000451070 NISCHQ9Y2I1 1504 aa24.89■■□□□ 1.57
LINC01238-204ENST00000451070 CCDC180Q9P1Z9 1646 aa22.32■■□□□ 1.16
LINC01238-204ENST00000451070 ABCC9O60706 1549 aa22.27■■□□□ 1.16
LINC01238-204ENST00000451070 RB1CC1Q8TDY2 1594 aa21.21■□□□□ 0.99
LINC01238-204ENST00000451070 NACADO15069 1562 aa21.08■□□□□ 0.97
LINC01238-204ENST00000451070 DCAF8L2P0C7V8 631 aa20.92■□□□□ 0.94
LINC01238-204ENST00000451070 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
LINC01238-204ENST00000451070 MYO15BQ96JP2 1530 aa20.81■□□□□ 0.92
LINC01238-204ENST00000451070 UNC13AQ9UPW8 1703 aa20.79■□□□□ 0.92
LINC01238-204ENST00000451070 PABPN1Q86U42 306 aaKnown RBP eCLIP20.72■□□□□ 0.91
LINC01238-204ENST00000451070 ZCCHC6Q5VYS8 1495 aaKnown RBP20.64■□□□□ 0.89
LINC01238-204ENST00000451070 BICRAQ9NZM4 1560 aa20.63■□□□□ 0.89
LINC01238-204ENST00000451070 DCAF1Q9Y4B6 1507 aa20.56■□□□□ 0.88
LINC01238-204ENST00000451070 SCRIBQ14160 1630 aa20.33■□□□□ 0.84
LINC01238-204ENST00000451070 SHROOM4Q9ULL8 1493 aa20.31■□□□□ 0.84
LINC01238-204ENST00000451070 CC2D2AQ9P2K1 1620 aa20.13■□□□□ 0.81
LINC01238-204ENST00000451070 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
LINC01238-204ENST00000451070 CECR2Q9BXF3 1484 aa20.05■□□□□ 0.8
LINC01238-204ENST00000451070 NCAPD3P42695 1498 aa19.47■□□□□ 0.71
LINC01238-204ENST00000451070 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
LINC01238-204ENST00000451070 SMARCA4P51532 1647 aa19.41■□□□□ 0.7
LINC01238-204ENST00000451070 SMARCA2P51531 1590 aa19.35■□□□□ 0.69
LINC01238-204ENST00000451070 HMGXB3Q12766 1538 aa19.33■□□□□ 0.68
LINC01238-204ENST00000451070 BAZ1AQ9NRL2 1556 aaPredicted RBP19.3■□□□□ 0.68
LINC01238-204ENST00000451070 PEG3Q9GZU2 1588 aa19.23■□□□□ 0.67
LINC01238-204ENST00000451070 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
LINC01238-204ENST00000451070 ERCC6Q03468 1493 aa19.19■□□□□ 0.66
LINC01238-204ENST00000451070 MROH2BQ7Z745 1585 aa19.19■□□□□ 0.66
LINC01238-204ENST00000451070 CUX2O14529 1486 aa19.17■□□□□ 0.66
LINC01238-204ENST00000451070 NESP48681 1621 aa19.16■□□□□ 0.66
LINC01238-204ENST00000451070 DNAJC5Q9H3Z4 198 aa19.11■□□□□ 0.65
LINC01238-204ENST00000451070 LAMC3Q9Y6N6 1575 aa19.02■□□□□ 0.63
LINC01238-204ENST00000451070 THOC2Q8NI27 1593 aaKnown RBP18.98■□□□□ 0.63
LINC01238-204ENST00000451070 WIZO95785 1651 aa18.96■□□□□ 0.63
LINC01238-204ENST00000451070 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
LINC01238-204ENST00000451070 PDS5BQ9NTI5 1447 aa18.88■□□□□ 0.61
LINC01238-204ENST00000451070 CADPSQ9ULU8 1353 aa18.86■□□□□ 0.61
LINC01238-204ENST00000451070 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
LINC01238-204ENST00000451070 RSF1Q96T23 1441 aaPredicted RBP18.79■□□□□ 0.6
LINC01238-204ENST00000451070 MRC2Q9UBG0 1479 aa18.73■□□□□ 0.59
LINC01238-204ENST00000451070 AEBP2Q6ZN18 517 aaPredicted RBP18.72■□□□□ 0.59
LINC01238-204ENST00000451070 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
LINC01238-204ENST00000451070 WDR62O43379 1518 aa18.7■□□□□ 0.58
LINC01238-204ENST00000451070 CFTRP13569 1480 aa18.67■□□□□ 0.58
LINC01238-204ENST00000451070 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
LINC01238-204ENST00000451070 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
LINC01238-204ENST00000451070 URB2Q14146 1524 aaKnown RBP18.52■□□□□ 0.56
LINC01238-204ENST00000451070 PRDM2Q13029 1718 aa18.52■□□□□ 0.55
LINC01238-204ENST00000451070 CCDC88BA6NC98 1476 aa18.5■□□□□ 0.55
LINC01238-204ENST00000451070 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
LINC01238-204ENST00000451070 IFT140Q96RY7 1462 aa18.28■□□□□ 0.52
LINC01238-204ENST00000451070 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
LINC01238-204ENST00000451070 OSCARQ8IYS5 282 aa18.27■□□□□ 0.52
LINC01238-204ENST00000451070 TRIM41Q8WV44 630 aa18.27■□□□□ 0.52
LINC01238-204ENST00000451070 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
LINC01238-204ENST00000451070 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
LINC01238-204ENST00000451070 EIF4G3O43432 1585 aaKnown RBP18.18■□□□□ 0.5
LINC01238-204ENST00000451070 TARBP1Q13395 1621 aaKnown RBP18.17■□□□□ 0.5
LINC01238-204ENST00000451070 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.49
LINC01238-204ENST00000451070 AQRO60306 1485 aaKnown RBP eCLIP18.1■□□□□ 0.49
LINC01238-204ENST00000451070 RIMBP3CA6NJZ7 1639 aa18.08■□□□□ 0.48
LINC01238-204ENST00000451070 RIMBP3BA6NNM3 1639 aa18.08■□□□□ 0.48
LINC01238-204ENST00000451070 RIMBP3Q9UFD9 1639 aa18.08■□□□□ 0.48
LINC01238-204ENST00000451070 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
LINC01238-204ENST00000451070 CHD1O14646 1710 aa18.05■□□□□ 0.48
LINC01238-204ENST00000451070 CUX1P39880 1505 aa18.03■□□□□ 0.48
LINC01238-204ENST00000451070 SOGA1O94964 1423 aa18.02■□□□□ 0.48
LINC01238-204ENST00000451070 ARHGEF11O15085 1522 aa18.02■□□□□ 0.47
LINC01238-204ENST00000451070 FGD5Q6ZNL6 1462 aa18.01■□□□□ 0.47
LINC01238-204ENST00000451070 TDRD9Q8NDG6 1382 aaKnown RBP17.99■□□□□ 0.47
LINC01238-204ENST00000451070 WDR97A6NE52 1622 aa17.96■□□□□ 0.47
LINC01238-204ENST00000451070 SUPT5HO00267 1087 aaKnown RBP17.95■□□□□ 0.46
LINC01238-204ENST00000451070 FBLN2P98095 1184 aa17.93■□□□□ 0.46
LINC01238-204ENST00000451070 SNAPC4Q5SXM2 1469 aa17.92■□□□□ 0.46
LINC01238-204ENST00000451070 GRIN2BQ13224 1484 aa17.87■□□□□ 0.45
LINC01238-204ENST00000451070 MAGI1Q96QZ7 1491 aaPredicted RBP17.87■□□□□ 0.45
LINC01238-204ENST00000451070 ARAP1Q96P48 1450 aa17.86■□□□□ 0.45
LINC01238-204ENST00000451070 CYB5RLQ6IPT4 315 aa17.85■□□□□ 0.45
LINC01238-204ENST00000451070 CLASP1Q7Z460 1538 aa17.84■□□□□ 0.45
LINC01238-204ENST00000451070 PBRM1Q86U86 1689 aa17.83■□□□□ 0.45
LINC01238-204ENST00000451070 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
LINC01238-204ENST00000451070 GAPVD1Q14C86 1478 aa17.82■□□□□ 0.44
LINC01238-204ENST00000451070 CHMP7Q8WUX9 453 aaPredicted RBP17.81■□□□□ 0.44
LINC01238-204ENST00000451070 SYNJ2O15056 1496 aa17.81■□□□□ 0.44
LINC01238-204ENST00000451070 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
LINC01238-204ENST00000451070 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
LINC01238-204ENST00000451070 BIVM-ERCC5R4GMW8 1640 aa17.75■□□□□ 0.43
LINC01238-204ENST00000451070 TOP2BQ02880 1626 aa17.73■□□□□ 0.43
LINC01238-204ENST00000451070 WRNQ14191 1432 aaPredicted RBP eCLIP17.72■□□□□ 0.43
LINC01238-204ENST00000451070 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
LINC01238-204ENST00000451070 GRIN2AQ12879 1464 aa17.65■□□□□ 0.42
LINC01238-204ENST00000451070 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
LINC01238-204ENST00000451070 CEP170Q5SW79 1584 aa17.61■□□□□ 0.41
LINC01238-204ENST00000451070 NUP160Q12769 1436 aa17.6■□□□□ 0.41
LINC01238-204ENST00000451070 ERICH3Q5RHP9 1530 aa17.59■□□□□ 0.41
LINC01238-204ENST00000451070 FHAD1B1AJZ9 1412 aa17.58■□□□□ 0.41
LINC01238-204ENST00000451070 ERCC6L2Q5T890 1561 aa17.57■□□□□ 0.4
LINC01238-204ENST00000451070 SHROOM2Q13796 1616 aa17.54■□□□□ 0.4
LINC01238-204ENST00000451070 RUSC2Q8N2Y8 1516 aa17.42■□□□□ 0.38
LINC01238-204ENST00000451070 PRG4Q92954 1404 aaPredicted RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms