RNA–Protein interactions for RNA: ENST00000449159.5

SMPD4-211, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 635 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-211ENST00000449159 NISCHQ9Y2I1 1504 aa25.63■■□□□ 1.69
SMPD4-211ENST00000449159 CCDC180Q9P1Z9 1646 aa22.75■■□□□ 1.23
SMPD4-211ENST00000449159 ABCC9O60706 1549 aa22.67■■□□□ 1.22
SMPD4-211ENST00000449159 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
SMPD4-211ENST00000449159 NACADO15069 1562 aa21.4■■□□□ 1.02
SMPD4-211ENST00000449159 ZCCHC6Q5VYS8 1495 aaKnown RBP21.4■■□□□ 1.02
SMPD4-211ENST00000449159 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
SMPD4-211ENST00000449159 UNC13AQ9UPW8 1703 aa21.26■□□□□ 0.99
SMPD4-211ENST00000449159 DNAJC5BQ9UF47 199 aa21.21■□□□□ 0.99
SMPD4-211ENST00000449159 MYO15BQ96JP2 1530 aa21.19■□□□□ 0.98
SMPD4-211ENST00000449159 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
SMPD4-211ENST00000449159 BICRAQ9NZM4 1560 aa20.96■□□□□ 0.95
SMPD4-211ENST00000449159 PABPN1Q86U42 306 aaKnown RBP eCLIP20.91■□□□□ 0.944e-6■■■□□ 16.3
SMPD4-211ENST00000449159 SCRIBQ14160 1630 aa20.79■□□□□ 0.92
SMPD4-211ENST00000449159 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
SMPD4-211ENST00000449159 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
SMPD4-211ENST00000449159 EIF4G1Q04637 1599 aaKnown RBP20.47■□□□□ 0.87
SMPD4-211ENST00000449159 CECR2Q9BXF3 1484 aa20.44■□□□□ 0.86
SMPD4-211ENST00000449159 SMARCA4P51532 1647 aa19.88■□□□□ 0.77
SMPD4-211ENST00000449159 BAZ1AQ9NRL2 1556 aaPredicted RBP19.84■□□□□ 0.77
SMPD4-211ENST00000449159 MROH2BQ7Z745 1585 aa19.78■□□□□ 0.76
SMPD4-211ENST00000449159 ATAD2BQ9ULI0 1458 aa19.68■□□□□ 0.74
SMPD4-211ENST00000449159 CUX2O14529 1486 aa19.67■□□□□ 0.74
SMPD4-211ENST00000449159 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
SMPD4-211ENST00000449159 SMARCA2P51531 1590 aa19.66■□□□□ 0.74
SMPD4-211ENST00000449159 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
SMPD4-211ENST00000449159 HMGXB3Q12766 1538 aa19.65■□□□□ 0.74
SMPD4-211ENST00000449159 DNAJC5Q9H3Z4 198 aa19.64■□□□□ 0.73
SMPD4-211ENST00000449159 ERCC6Q03468 1493 aa19.62■□□□□ 0.73
SMPD4-211ENST00000449159 WIZO95785 1651 aa19.62■□□□□ 0.73
SMPD4-211ENST00000449159 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
SMPD4-211ENST00000449159 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
SMPD4-211ENST00000449159 THOC2Q8NI27 1593 aaKnown RBP19.42■□□□□ 0.7
SMPD4-211ENST00000449159 NESP48681 1621 aa19.42■□□□□ 0.7
SMPD4-211ENST00000449159 LAMC3Q9Y6N6 1575 aa19.38■□□□□ 0.69
SMPD4-211ENST00000449159 TOP2AP11388 1531 aaKnown RBP19.37■□□□□ 0.69
SMPD4-211ENST00000449159 KIF21AQ7Z4S6 1674 aa19.35■□□□□ 0.69
SMPD4-211ENST00000449159 SUPT5HO00267 1087 aaKnown RBP19.22■□□□□ 0.67
SMPD4-211ENST00000449159 PDS5BQ9NTI5 1447 aa19.15■□□□□ 0.66
SMPD4-211ENST00000449159 CCDC88BA6NC98 1476 aa19.13■□□□□ 0.65
SMPD4-211ENST00000449159 WDR62O43379 1518 aa19.07■□□□□ 0.64
SMPD4-211ENST00000449159 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
SMPD4-211ENST00000449159 CADPSQ9ULU8 1353 aa19.05■□□□□ 0.64
SMPD4-211ENST00000449159 CFTRP13569 1480 aa19■□□□□ 0.63
SMPD4-211ENST00000449159 PRDM2Q13029 1718 aa18.97■□□□□ 0.63
SMPD4-211ENST00000449159 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
SMPD4-211ENST00000449159 FANCD2Q9BXW9 1451 aa18.88■□□□□ 0.61
SMPD4-211ENST00000449159 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
SMPD4-211ENST00000449159 TRIM41Q8WV44 630 aa18.72■□□□□ 0.59
SMPD4-211ENST00000449159 DNMBPQ6XZF7 1577 aa18.6■□□□□ 0.57
SMPD4-211ENST00000449159 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
SMPD4-211ENST00000449159 RIMBP3CA6NJZ7 1639 aa18.56■□□□□ 0.56
SMPD4-211ENST00000449159 RIMBP3BA6NNM3 1639 aa18.56■□□□□ 0.56
SMPD4-211ENST00000449159 RIMBP3Q9UFD9 1639 aa18.56■□□□□ 0.56
SMPD4-211ENST00000449159 EIF4G3O43432 1585 aaKnown RBP18.56■□□□□ 0.56
SMPD4-211ENST00000449159 CUX1P39880 1505 aa18.55■□□□□ 0.56
SMPD4-211ENST00000449159 IFT140Q96RY7 1462 aa18.55■□□□□ 0.56
SMPD4-211ENST00000449159 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
SMPD4-211ENST00000449159 OSCARQ8IYS5 282 aa18.54■□□□□ 0.56
SMPD4-211ENST00000449159 ZNF608Q9ULD9 1512 aaPredicted RBP18.5■□□□□ 0.55
SMPD4-211ENST00000449159 CHD1O14646 1710 aa18.49■□□□□ 0.55
SMPD4-211ENST00000449159 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
SMPD4-211ENST00000449159 WRNQ14191 1432 aaPredicted RBP eCLIP18.46■□□□□ 0.55
SMPD4-211ENST00000449159 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.54
SMPD4-211ENST00000449159 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
SMPD4-211ENST00000449159 ARHGEF11O15085 1522 aa18.44■□□□□ 0.54
SMPD4-211ENST00000449159 FGD5Q6ZNL6 1462 aa18.44■□□□□ 0.54
SMPD4-211ENST00000449159 TOP2BQ02880 1626 aa18.43■□□□□ 0.54
SMPD4-211ENST00000449159 TARBP1Q13395 1621 aaKnown RBP18.43■□□□□ 0.54
SMPD4-211ENST00000449159 RAD54L2Q9Y4B4 1467 aa18.39■□□□□ 0.53
SMPD4-211ENST00000449159 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
SMPD4-211ENST00000449159 SOGA1O94964 1423 aa18.34■□□□□ 0.53
SMPD4-211ENST00000449159 AQRO60306 1485 aaKnown RBP eCLIP18.26■□□□□ 0.517e-8■■■■□ 19.6
SMPD4-211ENST00000449159 ABCA10Q8WWZ4 1543 aa18.25■□□□□ 0.51
SMPD4-211ENST00000449159 TDRD9Q8NDG6 1382 aaKnown RBP18.24■□□□□ 0.51
SMPD4-211ENST00000449159 ARAP1Q96P48 1450 aa18.23■□□□□ 0.51
SMPD4-211ENST00000449159 ABCA5Q8WWZ7 1642 aa18.21■□□□□ 0.51
SMPD4-211ENST00000449159 PBRM1Q86U86 1689 aa18.19■□□□□ 0.5
SMPD4-211ENST00000449159 CLASP1Q7Z460 1538 aa18.18■□□□□ 0.5
SMPD4-211ENST00000449159 SNAPC4Q5SXM2 1469 aa18.17■□□□□ 0.5
SMPD4-211ENST00000449159 GAPVD1Q14C86 1478 aa18.15■□□□□ 0.5
SMPD4-211ENST00000449159 MAGI1Q96QZ7 1491 aaPredicted RBP18.14■□□□□ 0.5
SMPD4-211ENST00000449159 FBLN2P98095 1184 aa18.11■□□□□ 0.49
SMPD4-211ENST00000449159 CYB5RLQ6IPT4 315 aa18.11■□□□□ 0.49
SMPD4-211ENST00000449159 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
SMPD4-211ENST00000449159 SYNJ2O15056 1496 aa18.06■□□□□ 0.48
SMPD4-211ENST00000449159 CHIC1Q5VXU3 224 aa18.04■□□□□ 0.48
SMPD4-211ENST00000449159 ERICH3Q5RHP9 1530 aa18.03■□□□□ 0.48
SMPD4-211ENST00000449159 KIF27Q86VH2 1401 aa18.03■□□□□ 0.48
SMPD4-211ENST00000449159 ADAMTS12P58397 1594 aa18.02■□□□□ 0.48
SMPD4-211ENST00000449159 RUSC2Q8N2Y8 1516 aa18■□□□□ 0.47
SMPD4-211ENST00000449159 TRHP20396 242 aaPredicted RBP17.98■□□□□ 0.47
SMPD4-211ENST00000449159 CHMP7Q8WUX9 453 aaPredicted RBP17.95■□□□□ 0.46
SMPD4-211ENST00000449159 IGF1RP08069 1367 aa17.94■□□□□ 0.46
SMPD4-211ENST00000449159 CUL7Q14999 1698 aa17.93■□□□□ 0.46
SMPD4-211ENST00000449159 FHAD1B1AJZ9 1412 aa17.93■□□□□ 0.46
SMPD4-211ENST00000449159 GRIN2AQ12879 1464 aa17.9■□□□□ 0.46
SMPD4-211ENST00000449159 CEP170Q5SW79 1584 aa17.86■□□□□ 0.45
SMPD4-211ENST00000449159 SHROOM2Q13796 1616 aa17.85■□□□□ 0.45
SMPD4-211ENST00000449159 CARMIL1Q5VZK9 1371 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms