RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 NISCHQ9Y2I1 1504 aa32.92■■■□□ 2.86
HMGB3-204ENST00000448905 ABCC9O60706 1549 aa29.86■■■□□ 2.37
HMGB3-204ENST00000448905 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
HMGB3-204ENST00000448905 DNAJC5BQ9UF47 199 aa28.31■■■□□ 2.12
HMGB3-204ENST00000448905 DCAF8L2P0C7V8 631 aa28.18■■■□□ 2.1
HMGB3-204ENST00000448905 RB1CC1Q8TDY2 1594 aa28.17■■■□□ 2.1
HMGB3-204ENST00000448905 NACADO15069 1562 aa27.98■■■□□ 2.07
HMGB3-204ENST00000448905 PABPN1Q86U42 306 aaKnown RBP eCLIP27.84■■■□□ 2.05
HMGB3-204ENST00000448905 UNC13AQ9UPW8 1703 aa27.63■■■□□ 2.01
HMGB3-204ENST00000448905 MYO15BQ96JP2 1530 aa27.59■■■□□ 2.01
HMGB3-204ENST00000448905 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
HMGB3-204ENST00000448905 ZCCHC6Q5VYS8 1495 aaKnown RBP27.2■■□□□ 1.95
HMGB3-204ENST00000448905 DCAF1Q9Y4B6 1507 aa27.18■■□□□ 1.94
HMGB3-204ENST00000448905 SHROOM4Q9ULL8 1493 aa27.01■■□□□ 1.91
HMGB3-204ENST00000448905 SCRIBQ14160 1630 aa26.96■■□□□ 1.91
HMGB3-204ENST00000448905 CC2D2AQ9P2K1 1620 aa26.9■■□□□ 1.9
HMGB3-204ENST00000448905 CECR2Q9BXF3 1484 aa26.85■■□□□ 1.89
HMGB3-204ENST00000448905 EIF4G1Q04637 1599 aaKnown RBP26.75■■□□□ 1.87
HMGB3-204ENST00000448905 DNAJC5Q9H3Z4 198 aa26.05■■□□□ 1.76
HMGB3-204ENST00000448905 NCAPD3P42695 1498 aa25.92■■□□□ 1.74
HMGB3-204ENST00000448905 ATAD2BQ9ULI0 1458 aa25.78■■□□□ 1.72
HMGB3-204ENST00000448905 ERCC6Q03468 1493 aa25.73■■□□□ 1.71
HMGB3-204ENST00000448905 SMARCA2P51531 1590 aa25.68■■□□□ 1.7
HMGB3-204ENST00000448905 CUX2O14529 1486 aa25.67■■□□□ 1.7
HMGB3-204ENST00000448905 SMARCA4P51532 1647 aa25.63■■□□□ 1.69
HMGB3-204ENST00000448905 NESP48681 1621 aa25.6■■□□□ 1.69
HMGB3-204ENST00000448905 HMGXB3Q12766 1538 aa25.58■■□□□ 1.68
HMGB3-204ENST00000448905 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
HMGB3-204ENST00000448905 BAZ1BQ9UIG0 1483 aaKnown RBP25.53■■□□□ 1.68
HMGB3-204ENST00000448905 PEG3Q9GZU2 1588 aa25.35■■□□□ 1.65
HMGB3-204ENST00000448905 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
HMGB3-204ENST00000448905 PDS5BQ9NTI5 1447 aa25.29■■□□□ 1.64
HMGB3-204ENST00000448905 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
HMGB3-204ENST00000448905 LAMC3Q9Y6N6 1575 aa25.23■■□□□ 1.63
HMGB3-204ENST00000448905 KIF21AQ7Z4S6 1674 aa25.21■■□□□ 1.63
HMGB3-204ENST00000448905 CADPSQ9ULU8 1353 aa25.19■■□□□ 1.62
HMGB3-204ENST00000448905 WIZO95785 1651 aa25.04■■□□□ 1.6
HMGB3-204ENST00000448905 MRC2Q9UBG0 1479 aa24.94■■□□□ 1.58
HMGB3-204ENST00000448905 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
HMGB3-204ENST00000448905 RSF1Q96T23 1441 aaPredicted RBP24.88■■□□□ 1.57
HMGB3-204ENST00000448905 WDR62O43379 1518 aa24.84■■□□□ 1.57
HMGB3-204ENST00000448905 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.57
HMGB3-204ENST00000448905 FANCD2Q9BXW9 1451 aa24.81■■□□□ 1.56
HMGB3-204ENST00000448905 CFTRP13569 1480 aa24.8■■□□□ 1.56
HMGB3-204ENST00000448905 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
HMGB3-204ENST00000448905 TOP2AP11388 1531 aaKnown RBP24.68■■□□□ 1.54
HMGB3-204ENST00000448905 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
HMGB3-204ENST00000448905 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
HMGB3-204ENST00000448905 IFT140Q96RY7 1462 aa24.38■■□□□ 1.49
HMGB3-204ENST00000448905 PRDM2Q13029 1718 aa24.38■■□□□ 1.49
HMGB3-204ENST00000448905 ZNF608Q9ULD9 1512 aaPredicted RBP24.37■■□□□ 1.49
HMGB3-204ENST00000448905 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
HMGB3-204ENST00000448905 TOPBP1Q92547 1522 aa24.28■■□□□ 1.48
HMGB3-204ENST00000448905 RIMBP3CA6NJZ7 1639 aa24.28■■□□□ 1.48
HMGB3-204ENST00000448905 RIMBP3BA6NNM3 1639 aa24.28■■□□□ 1.48
HMGB3-204ENST00000448905 RIMBP3Q9UFD9 1639 aa24.28■■□□□ 1.48
HMGB3-204ENST00000448905 FBLN2P98095 1184 aa24.18■■□□□ 1.46
HMGB3-204ENST00000448905 EIF4G3O43432 1585 aaKnown RBP24.15■■□□□ 1.46
HMGB3-204ENST00000448905 ARHGEF11O15085 1522 aa24.14■■□□□ 1.45
HMGB3-204ENST00000448905 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.453e-6■■■■□ 24.7
HMGB3-204ENST00000448905 DNMBPQ6XZF7 1577 aa24.13■■□□□ 1.45
HMGB3-204ENST00000448905 CYB5RLQ6IPT4 315 aa24.1■■□□□ 1.45
HMGB3-204ENST00000448905 SOGA1O94964 1423 aa24.08■■□□□ 1.44
HMGB3-204ENST00000448905 CHD1O14646 1710 aa24.06■■□□□ 1.44
HMGB3-204ENST00000448905 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
HMGB3-204ENST00000448905 TDRD9Q8NDG6 1382 aaKnown RBP24.03■■□□□ 1.44
HMGB3-204ENST00000448905 POLA1P09884 1462 aaPredicted RBP24.03■■□□□ 1.44
HMGB3-204ENST00000448905 RAD54L2Q9Y4B4 1467 aa24■■□□□ 1.43
HMGB3-204ENST00000448905 CHMP7Q8WUX9 453 aaPredicted RBP24■■□□□ 1.43
HMGB3-204ENST00000448905 SUPT5HO00267 1087 aaKnown RBP23.92■■□□□ 1.42
HMGB3-204ENST00000448905 TRHP20396 242 aaPredicted RBP23.91■■□□□ 1.42
HMGB3-204ENST00000448905 ARAP1Q96P48 1450 aa23.91■■□□□ 1.42
HMGB3-204ENST00000448905 FGD5Q6ZNL6 1462 aa23.87■■□□□ 1.41
HMGB3-204ENST00000448905 SNAPC4Q5SXM2 1469 aa23.83■■□□□ 1.41
HMGB3-204ENST00000448905 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
HMGB3-204ENST00000448905 CUX1P39880 1505 aa23.79■■□□□ 1.4
HMGB3-204ENST00000448905 MAGI1Q96QZ7 1491 aaPredicted RBP23.78■■□□□ 1.4
HMGB3-204ENST00000448905 WDR97A6NE52 1622 aa23.76■■□□□ 1.39
HMGB3-204ENST00000448905 CLASP1Q7Z460 1538 aa23.71■■□□□ 1.39
HMGB3-204ENST00000448905 SYNJ2O15056 1496 aa23.71■■□□□ 1.39
HMGB3-204ENST00000448905 GAPVD1Q14C86 1478 aa23.7■■□□□ 1.38
HMGB3-204ENST00000448905 SYNJ1O43426 1573 aa23.67■■□□□ 1.38
HMGB3-204ENST00000448905 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.37
HMGB3-204ENST00000448905 ABCA10Q8WWZ4 1543 aa23.62■■□□□ 1.37
HMGB3-204ENST00000448905 PBRM1Q86U86 1689 aa23.6■■□□□ 1.37
HMGB3-204ENST00000448905 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
HMGB3-204ENST00000448905 ERCC6L2Q5T890 1561 aa23.45■■□□□ 1.34
HMGB3-204ENST00000448905 FHAD1B1AJZ9 1412 aa23.44■■□□□ 1.34
HMGB3-204ENST00000448905 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
HMGB3-204ENST00000448905 NUP160Q12769 1436 aa23.37■■□□□ 1.33
HMGB3-204ENST00000448905 JPH4Q96JJ6 628 aa23.36■■□□□ 1.33
HMGB3-204ENST00000448905 TOP2BQ02880 1626 aa23.36■■□□□ 1.33
HMGB3-204ENST00000448905 AEBP2Q6ZN18 517 aaPredicted RBP23.35■■□□□ 1.33
HMGB3-204ENST00000448905 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
HMGB3-204ENST00000448905 ADAMTS12P58397 1594 aa23.32■■□□□ 1.32
HMGB3-204ENST00000448905 ERICH3Q5RHP9 1530 aa23.3■■□□□ 1.32
HMGB3-204ENST00000448905 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
HMGB3-204ENST00000448905 NPM1P06748 294 aaKnown RBP eCLIP23.26■■□□□ 1.31
HMGB3-204ENST00000448905 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
HMGB3-204ENST00000448905 SHROOM2Q13796 1616 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms