RNA–Protein interactions for RNA: ENST00000448850.5

APP-210, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best)

Gene APP, Length 1,846 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-210ENST00000448850 NISCHQ9Y2I1 1504 aa34.15■■■■□ 3.06
APP-210ENST00000448850 CCDC180Q9P1Z9 1646 aa30.12■■■□□ 2.41
APP-210ENST00000448850 ABCC9O60706 1549 aa28.77■■■□□ 2.2
APP-210ENST00000448850 ZCCHC6Q5VYS8 1495 aaKnown RBP28.58■■■□□ 2.17
APP-210ENST00000448850 DCAF1Q9Y4B6 1507 aa28.28■■■□□ 2.12
APP-210ENST00000448850 DCAF8L2P0C7V8 631 aa28.25■■■□□ 2.11
APP-210ENST00000448850 MYO15BQ96JP2 1530 aa28.14■■■□□ 2.09
APP-210ENST00000448850 NACADO15069 1562 aa28.11■■■□□ 2.09
APP-210ENST00000448850 RB1CC1Q8TDY2 1594 aa27.99■■■□□ 2.07
APP-210ENST00000448850 SCRIBQ14160 1630 aa27.52■■■□□ 2
APP-210ENST00000448850 UNC13AQ9UPW8 1703 aa27.5■■□□□ 1.99
APP-210ENST00000448850 SHROOM4Q9ULL8 1493 aa27.39■■□□□ 1.98
APP-210ENST00000448850 BICRAQ9NZM4 1560 aa27.14■■□□□ 1.93
APP-210ENST00000448850 PABPN1Q86U42 306 aaKnown RBP eCLIP26.98■■□□□ 1.91
APP-210ENST00000448850 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
APP-210ENST00000448850 BAZ1AQ9NRL2 1556 aaPredicted RBP26.43■■□□□ 1.82
APP-210ENST00000448850 SMARCA4P51532 1647 aa26.39■■□□□ 1.81
APP-210ENST00000448850 EIF4G1Q04637 1599 aaKnown RBP26.35■■□□□ 1.81
APP-210ENST00000448850 MROH2BQ7Z745 1585 aa26.34■■□□□ 1.81
APP-210ENST00000448850 RSF1Q96T23 1441 aaPredicted RBP26.25■■□□□ 1.79
APP-210ENST00000448850 WIZO95785 1651 aa26.14■■□□□ 1.78
APP-210ENST00000448850 SUPT5HO00267 1087 aaKnown RBP26.11■■□□□ 1.77
APP-210ENST00000448850 PEG3Q9GZU2 1588 aa26.1■■□□□ 1.77
APP-210ENST00000448850 CC2D2AQ9P2K1 1620 aa26.09■■□□□ 1.77
APP-210ENST00000448850 SMARCA2P51531 1590 aa26.05■■□□□ 1.76
APP-210ENST00000448850 ATAD2BQ9ULI0 1458 aa26.03■■□□□ 1.76
APP-210ENST00000448850 NCAPD3P42695 1498 aa25.91■■□□□ 1.74
APP-210ENST00000448850 BAZ1BQ9UIG0 1483 aaKnown RBP25.87■■□□□ 1.73
APP-210ENST00000448850 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
APP-210ENST00000448850 TOP2AP11388 1531 aaKnown RBP25.86■■□□□ 1.73
APP-210ENST00000448850 DNAJC5BQ9UF47 199 aa25.79■■□□□ 1.72
APP-210ENST00000448850 CCDC88BA6NC98 1476 aa25.54■■□□□ 1.68
APP-210ENST00000448850 PRDM2Q13029 1718 aa25.2■■□□□ 1.62
APP-210ENST00000448850 CFTRP13569 1480 aa25.18■■□□□ 1.62
APP-210ENST00000448850 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
APP-210ENST00000448850 LAMC3Q9Y6N6 1575 aa25.16■■□□□ 1.62
APP-210ENST00000448850 NESP48681 1621 aa25.11■■□□□ 1.61
APP-210ENST00000448850 PDS5BQ9NTI5 1447 aa24.92■■□□□ 1.58
APP-210ENST00000448850 KIF21AQ7Z4S6 1674 aa24.91■■□□□ 1.58
APP-210ENST00000448850 FANCD2Q9BXW9 1451 aa24.91■■□□□ 1.58
APP-210ENST00000448850 ABCC8Q09428 1581 aa24.85■■□□□ 1.57
APP-210ENST00000448850 CEP164Q9UPV0 1460 aa24.82■■□□□ 1.56
APP-210ENST00000448850 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
APP-210ENST00000448850 WRNQ14191 1432 aaPredicted RBP eCLIP24.74■■□□□ 1.55
APP-210ENST00000448850 ERCC6Q03468 1493 aa24.74■■□□□ 1.55
APP-210ENST00000448850 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
APP-210ENST00000448850 BIVM-ERCC5R4GMW8 1640 aa24.67■■□□□ 1.54
APP-210ENST00000448850 CUX1P39880 1505 aa24.67■■□□□ 1.54
APP-210ENST00000448850 TOP2BQ02880 1626 aa24.66■■□□□ 1.54
APP-210ENST00000448850 DNMBPQ6XZF7 1577 aa24.64■■□□□ 1.54
APP-210ENST00000448850 MRC2Q9UBG0 1479 aa24.63■■□□□ 1.53
APP-210ENST00000448850 URB2Q14146 1524 aaKnown RBP24.63■■□□□ 1.53
APP-210ENST00000448850 TRIM41Q8WV44 630 aa24.63■■□□□ 1.53
APP-210ENST00000448850 THOC2Q8NI27 1593 aaKnown RBP24.61■■□□□ 1.53
APP-210ENST00000448850 TOPBP1Q92547 1522 aa24.6■■□□□ 1.53
APP-210ENST00000448850 WDR62O43379 1518 aa24.55■■□□□ 1.52
APP-210ENST00000448850 FGD5Q6ZNL6 1462 aa24.48■■□□□ 1.51
APP-210ENST00000448850 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
APP-210ENST00000448850 SOGA1O94964 1423 aa24.33■■□□□ 1.49
APP-210ENST00000448850 CUX2O14529 1486 aa24.33■■□□□ 1.48
APP-210ENST00000448850 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.48
APP-210ENST00000448850 TARBP1Q13395 1621 aaKnown RBP24.31■■□□□ 1.48
APP-210ENST00000448850 WDR97A6NE52 1622 aa24.31■■□□□ 1.48
APP-210ENST00000448850 ABCA10Q8WWZ4 1543 aa24.26■■□□□ 1.47
APP-210ENST00000448850 IFT140Q96RY7 1462 aa24.26■■□□□ 1.47
APP-210ENST00000448850 RUSC2Q8N2Y8 1516 aa24.19■■□□□ 1.46
APP-210ENST00000448850 KIF27Q86VH2 1401 aa24.17■■□□□ 1.46
APP-210ENST00000448850 EEA1Q15075 1411 aa24.15■■□□□ 1.46
APP-210ENST00000448850 ABCA5Q8WWZ7 1642 aa24.15■■□□□ 1.46
APP-210ENST00000448850 FAM9AQ8IZU1 332 aaPredicted RBP24.12■■□□□ 1.45
APP-210ENST00000448850 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
APP-210ENST00000448850 ZNF608Q9ULD9 1512 aaPredicted RBP24.11■■□□□ 1.45
APP-210ENST00000448850 EIF4G3O43432 1585 aaKnown RBP24.08■■□□□ 1.45
APP-210ENST00000448850 PBRM1Q86U86 1689 aa24.07■■□□□ 1.44
APP-210ENST00000448850 GAPVD1Q14C86 1478 aa24.07■■□□□ 1.44
APP-210ENST00000448850 AQRO60306 1485 aaKnown RBP eCLIP24.05■■□□□ 1.44
APP-210ENST00000448850 CSRNP3Q8WYN3 585 aa24.02■■□□□ 1.44
APP-210ENST00000448850 ERICH3Q5RHP9 1530 aa23.99■■□□□ 1.43
APP-210ENST00000448850 IGF1RP08069 1367 aa23.98■■□□□ 1.43
APP-210ENST00000448850 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
APP-210ENST00000448850 CUL7Q14999 1698 aa23.95■■□□□ 1.42
APP-210ENST00000448850 KIF21BO75037 1637 aa23.9■■□□□ 1.42
APP-210ENST00000448850 PRXQ9BXM0 1461 aa23.88■■□□□ 1.41
APP-210ENST00000448850 ADAMTS12P58397 1594 aa23.86■■□□□ 1.41
APP-210ENST00000448850 CARMIL1Q5VZK9 1371 aa23.85■■□□□ 1.41
APP-210ENST00000448850 SNAPC4Q5SXM2 1469 aa23.85■■□□□ 1.41
APP-210ENST00000448850 MAGI1Q96QZ7 1491 aaPredicted RBP23.84■■□□□ 1.41
APP-210ENST00000448850 FHAD1B1AJZ9 1412 aa23.8■■□□□ 1.4
APP-210ENST00000448850 RAPGEF2Q9Y4G8 1499 aa23.8■■□□□ 1.4
APP-210ENST00000448850 GOLGA3Q08378 1498 aa23.78■■□□□ 1.4
APP-210ENST00000448850 LOC105371045A0A1W2PR82 267 aa23.76■■□□□ 1.39
APP-210ENST00000448850 EHMT2Q96KQ7 1210 aa23.75■■□□□ 1.39
APP-210ENST00000448850 SYNJ2O15056 1496 aa23.73■■□□□ 1.39
APP-210ENST00000448850 CHD1O14646 1710 aa23.71■■□□□ 1.39
APP-210ENST00000448850 GRIN2AQ12879 1464 aa23.67■■□□□ 1.38
APP-210ENST00000448850 CHMP7Q8WUX9 453 aaPredicted RBP23.66■■□□□ 1.38
APP-210ENST00000448850 CTTNBP2Q8WZ74 1663 aa23.65■■□□□ 1.38
APP-210ENST00000448850 UBTFP17480 764 aaKnown RBP23.65■■□□□ 1.38
APP-210ENST00000448850 FBLN2P98095 1184 aa23.63■■□□□ 1.37
APP-210ENST00000448850 TNIKQ9UKE5 1360 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms