RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 NISCHQ9Y2I1 1504 aa17.5■□□□□ 0.39
VPS41-208ENST00000448833 CCDC180Q9P1Z9 1646 aa15.75■□□□□ 0.11
VPS41-208ENST00000448833 AEBP2Q6ZN18 517 aaPredicted RBP15.64■□□□□ 0.09
VPS41-208ENST00000448833 ABCC9O60706 1549 aa15.58■□□□□ 0.08
VPS41-208ENST00000448833 CHIC1Q5VXU3 224 aa15.07■□□□□ 0
VPS41-208ENST00000448833 RB1CC1Q8TDY2 1594 aa14.96□□□□□ -0.01
VPS41-208ENST00000448833 NACADO15069 1562 aa14.87□□□□□ -0.03
VPS41-208ENST00000448833 DCAF8L2P0C7V8 631 aa14.76□□□□□ -0.05
VPS41-208ENST00000448833 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
VPS41-208ENST00000448833 UNC13AQ9UPW8 1703 aa14.59□□□□□ -0.07
VPS41-208ENST00000448833 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.09
VPS41-208ENST00000448833 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
VPS41-208ENST00000448833 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
VPS41-208ENST00000448833 ZCCHC6Q5VYS8 1495 aaKnown RBP14.49□□□□□ -0.09
VPS41-208ENST00000448833 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
VPS41-208ENST00000448833 SHROOM4Q9ULL8 1493 aa14.37□□□□□ -0.11
VPS41-208ENST00000448833 SCRIBQ14160 1630 aa14.26□□□□□ -0.13
VPS41-208ENST00000448833 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
VPS41-208ENST00000448833 EIF4G1Q04637 1599 aaKnown RBP14.1□□□□□ -0.15
VPS41-208ENST00000448833 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
VPS41-208ENST00000448833 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
VPS41-208ENST00000448833 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
VPS41-208ENST00000448833 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
VPS41-208ENST00000448833 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
VPS41-208ENST00000448833 ATAD2BQ9ULI0 1458 aa13.62□□□□□ -0.23
VPS41-208ENST00000448833 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
VPS41-208ENST00000448833 SENP3Q9H4L4 574 aaPredicted RBP13.56□□□□□ -0.24
VPS41-208ENST00000448833 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
VPS41-208ENST00000448833 BAZ1BQ9UIG0 1483 aaKnown RBP13.53□□□□□ -0.24
VPS41-208ENST00000448833 ERCC6Q03468 1493 aa13.51□□□□□ -0.25
VPS41-208ENST00000448833 CUX2O14529 1486 aa13.48□□□□□ -0.25
VPS41-208ENST00000448833 MROH2BQ7Z745 1585 aa13.43□□□□□ -0.26
VPS41-208ENST00000448833 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
VPS41-208ENST00000448833 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
VPS41-208ENST00000448833 NESP48681 1621 aa13.37□□□□□ -0.27
VPS41-208ENST00000448833 PDS5BQ9NTI5 1447 aa13.34□□□□□ -0.27
VPS41-208ENST00000448833 WIZO95785 1651 aa13.31□□□□□ -0.28
VPS41-208ENST00000448833 CADPSQ9ULU8 1353 aa13.28□□□□□ -0.28
VPS41-208ENST00000448833 THOC2Q8NI27 1593 aaKnown RBP13.27□□□□□ -0.29
VPS41-208ENST00000448833 KIF21AQ7Z4S6 1674 aa13.27□□□□□ -0.29
VPS41-208ENST00000448833 PHF23Q9BUL5 403 aaPredicted RBP13.25□□□□□ -0.29
VPS41-208ENST00000448833 RSF1Q96T23 1441 aaPredicted RBP13.2□□□□□ -0.3
VPS41-208ENST00000448833 POTEDQ86YR6 584 aa13.17□□□□□ -0.3
VPS41-208ENST00000448833 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
VPS41-208ENST00000448833 TOP2AP11388 1531 aaKnown RBP13.16□□□□□ -0.3
VPS41-208ENST00000448833 CEP164Q9UPV0 1460 aa13.14□□□□□ -0.31
VPS41-208ENST00000448833 CFTRP13569 1480 aa13.12□□□□□ -0.31
VPS41-208ENST00000448833 WDR62O43379 1518 aa13.12□□□□□ -0.31
VPS41-208ENST00000448833 FANCD2Q9BXW9 1451 aa13.11□□□□□ -0.31
VPS41-208ENST00000448833 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
VPS41-208ENST00000448833 CCDC88BA6NC98 1476 aa12.99□□□□□ -0.33
VPS41-208ENST00000448833 URB2Q14146 1524 aaKnown RBP12.96□□□□□ -0.33
VPS41-208ENST00000448833 ABCC8Q09428 1581 aa12.95□□□□□ -0.34
VPS41-208ENST00000448833 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
VPS41-208ENST00000448833 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
VPS41-208ENST00000448833 TOPBP1Q92547 1522 aa12.86□□□□□ -0.35
VPS41-208ENST00000448833 DNMBPQ6XZF7 1577 aa12.84□□□□□ -0.35
VPS41-208ENST00000448833 TRIM41Q8WV44 630 aa12.79□□□□□ -0.36
VPS41-208ENST00000448833 ZNF608Q9ULD9 1512 aaPredicted RBP12.77□□□□□ -0.37
VPS41-208ENST00000448833 EIF4G3O43432 1585 aaKnown RBP12.75□□□□□ -0.37
VPS41-208ENST00000448833 TARBP1Q13395 1621 aaKnown RBP12.74□□□□□ -0.37
VPS41-208ENST00000448833 WDR97A6NE52 1622 aa12.72□□□□□ -0.37
VPS41-208ENST00000448833 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
VPS41-208ENST00000448833 SOGA1O94964 1423 aa12.71□□□□□ -0.38
VPS41-208ENST00000448833 AQRO60306 1485 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS41-208ENST00000448833 FOXD1Q16676 465 aa12.67□□□□□ -0.38
VPS41-208ENST00000448833 CHD1O14646 1710 aa12.67□□□□□ -0.38
VPS41-208ENST00000448833 RIMBP3CA6NJZ7 1639 aa12.66□□□□□ -0.38
VPS41-208ENST00000448833 RIMBP3BA6NNM3 1639 aa12.66□□□□□ -0.38
VPS41-208ENST00000448833 RIMBP3Q9UFD9 1639 aa12.66□□□□□ -0.38
VPS41-208ENST00000448833 SUPT5HO00267 1087 aaKnown RBP12.66□□□□□ -0.38
VPS41-208ENST00000448833 FBLN2P98095 1184 aa12.65□□□□□ -0.38
VPS41-208ENST00000448833 FGD5Q6ZNL6 1462 aa12.65□□□□□ -0.38
VPS41-208ENST00000448833 RAD54L2Q9Y4B4 1467 aa12.64□□□□□ -0.39
VPS41-208ENST00000448833 CUX1P39880 1505 aa12.62□□□□□ -0.39
VPS41-208ENST00000448833 TDRD9Q8NDG6 1382 aaKnown RBP12.62□□□□□ -0.39
VPS41-208ENST00000448833 ARHGEF11O15085 1522 aa12.62□□□□□ -0.39
VPS41-208ENST00000448833 MAGI1Q96QZ7 1491 aaPredicted RBP12.6□□□□□ -0.39
VPS41-208ENST00000448833 CHMP7Q8WUX9 453 aaPredicted RBP12.59□□□□□ -0.39
VPS41-208ENST00000448833 GRIN2BQ13224 1484 aa12.59□□□□□ -0.39
VPS41-208ENST00000448833 SYNJ1O43426 1573 aa12.56□□□□□ -0.4
VPS41-208ENST00000448833 SNAPC4Q5SXM2 1469 aa12.56□□□□□ -0.4
VPS41-208ENST00000448833 PBRM1Q86U86 1689 aa12.55□□□□□ -0.4
VPS41-208ENST00000448833 CYB5RLQ6IPT4 315 aa12.55□□□□□ -0.4
VPS41-208ENST00000448833 SYNJ2O15056 1496 aa12.54□□□□□ -0.4
VPS41-208ENST00000448833 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
VPS41-208ENST00000448833 ABCA10Q8WWZ4 1543 aa12.54□□□□□ -0.4
VPS41-208ENST00000448833 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
VPS41-208ENST00000448833 TOP2BQ02880 1626 aa12.5□□□□□ -0.41
VPS41-208ENST00000448833 ABCA5Q8WWZ7 1642 aa12.5□□□□□ -0.41
VPS41-208ENST00000448833 BIVM-ERCC5R4GMW8 1640 aa12.5□□□□□ -0.41
VPS41-208ENST00000448833 CLASP1Q7Z460 1538 aa12.49□□□□□ -0.41
VPS41-208ENST00000448833 ARAP1Q96P48 1450 aa12.46□□□□□ -0.41
VPS41-208ENST00000448833 TRHP20396 242 aaPredicted RBP12.43□□□□□ -0.42
VPS41-208ENST00000448833 ERICH3Q5RHP9 1530 aa12.41□□□□□ -0.42
VPS41-208ENST00000448833 GRIN2AQ12879 1464 aa12.4□□□□□ -0.42
VPS41-208ENST00000448833 FHAD1B1AJZ9 1412 aa12.4□□□□□ -0.42
VPS41-208ENST00000448833 ADAMTS12P58397 1594 aa12.39□□□□□ -0.43
VPS41-208ENST00000448833 PLPPR3Q6T4P5 718 aa12.36□□□□□ -0.43
VPS41-208ENST00000448833 NUP160Q12769 1436 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms