RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 NISCHQ9Y2I1 1504 aa25.88■■□□□ 1.73
SSBP3-209ENST00000448572 ABCC9O60706 1549 aa23.49■■□□□ 1.35
SSBP3-209ENST00000448572 CCDC180Q9P1Z9 1646 aa23.34■■□□□ 1.33
SSBP3-209ENST00000448572 RB1CC1Q8TDY2 1594 aa22.38■■□□□ 1.17
SSBP3-209ENST00000448572 NACADO15069 1562 aa22.17■■□□□ 1.14
SSBP3-209ENST00000448572 DNAJC5BQ9UF47 199 aa22.1■■□□□ 1.13
SSBP3-209ENST00000448572 DCAF8L2P0C7V8 631 aa21.99■■□□□ 1.11
SSBP3-209ENST00000448572 MYO15BQ96JP2 1530 aa21.84■■□□□ 1.09
SSBP3-209ENST00000448572 PABPN1Q86U42 306 aaKnown RBP eCLIP21.81■■□□□ 1.08
SSBP3-209ENST00000448572 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
SSBP3-209ENST00000448572 BICRAQ9NZM4 1560 aa21.54■■□□□ 1.04
SSBP3-209ENST00000448572 SHROOM4Q9ULL8 1493 aa21.53■■□□□ 1.04
SSBP3-209ENST00000448572 DCAF1Q9Y4B6 1507 aa21.45■■□□□ 1.02
SSBP3-209ENST00000448572 ZCCHC6Q5VYS8 1495 aaKnown RBP21.39■■□□□ 1.02
SSBP3-209ENST00000448572 CECR2Q9BXF3 1484 aa21.24■□□□□ 0.99
SSBP3-209ENST00000448572 CC2D2AQ9P2K1 1620 aa21.19■□□□□ 0.98
SSBP3-209ENST00000448572 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
SSBP3-209ENST00000448572 EIF4G1Q04637 1599 aaKnown RBP21.13■□□□□ 0.97
SSBP3-209ENST00000448572 DNAJC5Q9H3Z4 198 aa20.64■□□□□ 0.89
SSBP3-209ENST00000448572 CUX2O14529 1486 aa20.46■□□□□ 0.87
SSBP3-209ENST00000448572 NCAPD3P42695 1498 aa20.45■□□□□ 0.86
SSBP3-209ENST00000448572 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
SSBP3-209ENST00000448572 SMARCA2P51531 1590 aa20.33■□□□□ 0.84
SSBP3-209ENST00000448572 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
SSBP3-209ENST00000448572 HMGXB3Q12766 1538 aa20.28■□□□□ 0.84
SSBP3-209ENST00000448572 SMARCA4P51532 1647 aa20.2■□□□□ 0.82
SSBP3-209ENST00000448572 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
SSBP3-209ENST00000448572 BAZ1BQ9UIG0 1483 aaKnown RBP20.16■□□□□ 0.82
SSBP3-209ENST00000448572 PEG3Q9GZU2 1588 aa20.05■□□□□ 0.8
SSBP3-209ENST00000448572 NESP48681 1621 aa20.04■□□□□ 0.8
SSBP3-209ENST00000448572 LAMC3Q9Y6N6 1575 aa20.04■□□□□ 0.8
SSBP3-209ENST00000448572 PDS5BQ9NTI5 1447 aa20.01■□□□□ 0.79
SSBP3-209ENST00000448572 THOC2Q8NI27 1593 aaKnown RBP19.92■□□□□ 0.78
SSBP3-209ENST00000448572 MROH2BQ7Z745 1585 aa19.86■□□□□ 0.77
SSBP3-209ENST00000448572 CADPSQ9ULU8 1353 aa19.83■□□□□ 0.77
SSBP3-209ENST00000448572 KIF21AQ7Z4S6 1674 aa19.76■□□□□ 0.75
SSBP3-209ENST00000448572 MRC2Q9UBG0 1479 aa19.75■□□□□ 0.75
SSBP3-209ENST00000448572 WDR62O43379 1518 aa19.67■□□□□ 0.74
SSBP3-209ENST00000448572 CEP164Q9UPV0 1460 aa19.66■□□□□ 0.74
SSBP3-209ENST00000448572 TRIM41Q8WV44 630 aa19.63■□□□□ 0.73
SSBP3-209ENST00000448572 FANCD2Q9BXW9 1451 aa19.58■□□□□ 0.72
SSBP3-209ENST00000448572 WIZO95785 1651 aa19.57■□□□□ 0.72
SSBP3-209ENST00000448572 CFTRP13569 1480 aa19.54■□□□□ 0.72
SSBP3-209ENST00000448572 OSCARQ8IYS5 282 aa19.52■□□□□ 0.72
SSBP3-209ENST00000448572 TOP2AP11388 1531 aaKnown RBP19.43■□□□□ 0.7
SSBP3-209ENST00000448572 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
SSBP3-209ENST00000448572 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
SSBP3-209ENST00000448572 IFT140Q96RY7 1462 aa19.28■□□□□ 0.68
SSBP3-209ENST00000448572 ABCC8Q09428 1581 aa19.27■□□□□ 0.67
SSBP3-209ENST00000448572 PRDM2Q13029 1718 aa19.22■□□□□ 0.67
SSBP3-209ENST00000448572 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
SSBP3-209ENST00000448572 TOPBP1Q92547 1522 aa19.15■□□□□ 0.66
SSBP3-209ENST00000448572 ZNF608Q9ULD9 1512 aaPredicted RBP19.12■□□□□ 0.65
SSBP3-209ENST00000448572 RIMBP3CA6NJZ7 1639 aa19.11■□□□□ 0.65
SSBP3-209ENST00000448572 RIMBP3BA6NNM3 1639 aa19.11■□□□□ 0.65
SSBP3-209ENST00000448572 RIMBP3Q9UFD9 1639 aa19.11■□□□□ 0.65
SSBP3-209ENST00000448572 ARHGEF11O15085 1522 aa19.09■□□□□ 0.65
SSBP3-209ENST00000448572 DNMBPQ6XZF7 1577 aa19.08■□□□□ 0.65
SSBP3-209ENST00000448572 EIF4G3O43432 1585 aaKnown RBP19.04■□□□□ 0.64
SSBP3-209ENST00000448572 CYB5RLQ6IPT4 315 aa19■□□□□ 0.63
SSBP3-209ENST00000448572 FBLN2P98095 1184 aa18.99■□□□□ 0.63
SSBP3-209ENST00000448572 AQRO60306 1485 aaKnown RBP eCLIP18.97■□□□□ 0.63
SSBP3-209ENST00000448572 TARBP1Q13395 1621 aaKnown RBP18.94■□□□□ 0.62
SSBP3-209ENST00000448572 POLA1P09884 1462 aaPredicted RBP18.94■□□□□ 0.62
SSBP3-209ENST00000448572 TRHP20396 242 aaPredicted RBP18.93■□□□□ 0.62
SSBP3-209ENST00000448572 WDR97A6NE52 1622 aa18.91■□□□□ 0.62
SSBP3-209ENST00000448572 SOGA1O94964 1423 aa18.91■□□□□ 0.62
SSBP3-209ENST00000448572 CHD1O14646 1710 aa18.88■□□□□ 0.61
SSBP3-209ENST00000448572 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
SSBP3-209ENST00000448572 ARAP1Q96P48 1450 aa18.85■□□□□ 0.61
SSBP3-209ENST00000448572 TDRD9Q8NDG6 1382 aaKnown RBP18.84■□□□□ 0.61
SSBP3-209ENST00000448572 MAGI1Q96QZ7 1491 aaPredicted RBP18.83■□□□□ 0.6
SSBP3-209ENST00000448572 RAD54L2Q9Y4B4 1467 aa18.81■□□□□ 0.6
SSBP3-209ENST00000448572 SYNJ1O43426 1573 aa18.81■□□□□ 0.6
SSBP3-209ENST00000448572 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
SSBP3-209ENST00000448572 SNAPC4Q5SXM2 1469 aa18.79■□□□□ 0.6
SSBP3-209ENST00000448572 FGD5Q6ZNL6 1462 aa18.78■□□□□ 0.6
SSBP3-209ENST00000448572 SYNJ2O15056 1496 aa18.74■□□□□ 0.59
SSBP3-209ENST00000448572 CLASP1Q7Z460 1538 aa18.73■□□□□ 0.59
SSBP3-209ENST00000448572 CUX1P39880 1505 aa18.69■□□□□ 0.58
SSBP3-209ENST00000448572 GAPVD1Q14C86 1478 aa18.66■□□□□ 0.58
SSBP3-209ENST00000448572 AEBP2Q6ZN18 517 aaPredicted RBP18.61■□□□□ 0.57
SSBP3-209ENST00000448572 ABCA10Q8WWZ4 1543 aa18.6■□□□□ 0.57
SSBP3-209ENST00000448572 WRNQ14191 1432 aaPredicted RBP eCLIP18.57■□□□□ 0.56
SSBP3-209ENST00000448572 PBRM1Q86U86 1689 aa18.56■□□□□ 0.56
SSBP3-209ENST00000448572 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.56
SSBP3-209ENST00000448572 GRIN2AQ12879 1464 aa18.51■□□□□ 0.55
SSBP3-209ENST00000448572 FHAD1B1AJZ9 1412 aa18.46■□□□□ 0.55
SSBP3-209ENST00000448572 NUP160Q12769 1436 aa18.45■□□□□ 0.54
SSBP3-209ENST00000448572 SUPT5HO00267 1087 aaKnown RBP18.44■□□□□ 0.54
SSBP3-209ENST00000448572 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
SSBP3-209ENST00000448572 ERICH3Q5RHP9 1530 aa18.4■□□□□ 0.54
SSBP3-209ENST00000448572 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
SSBP3-209ENST00000448572 TOP2BQ02880 1626 aa18.38■□□□□ 0.53
SSBP3-209ENST00000448572 BIVM-ERCC5R4GMW8 1640 aa18.35■□□□□ 0.53
SSBP3-209ENST00000448572 NPM1P06748 294 aaKnown RBP eCLIP18.34■□□□□ 0.53
SSBP3-209ENST00000448572 SHROOM2Q13796 1616 aa18.33■□□□□ 0.52
SSBP3-209ENST00000448572 JPH4Q96JJ6 628 aa18.3■□□□□ 0.52
SSBP3-209ENST00000448572 PRG4Q92954 1404 aaPredicted RBP18.3■□□□□ 0.52
SSBP3-209ENST00000448572 ERCC6L2Q5T890 1561 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms