RNA–Protein interactions for RNA: ENST00000448141.6

CCHCR1-206, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-206ENST00000448141 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
CCHCR1-206ENST00000448141 CCDC180Q9P1Z9 1646 aa44.34■■■■■ 4.69
CCHCR1-206ENST00000448141 ABCC9O60706 1549 aa43.32■■■■■ 4.53
CCHCR1-206ENST00000448141 RB1CC1Q8TDY2 1594 aa41.68■■■■■ 4.26
CCHCR1-206ENST00000448141 DCAF8L2P0C7V8 631 aa41.65■■■■■ 4.26
CCHCR1-206ENST00000448141 NACADO15069 1562 aa41.63■■■■■ 4.25
CCHCR1-206ENST00000448141 ZCCHC6Q5VYS8 1495 aaKnown RBP41.53■■■■■ 4.24
CCHCR1-206ENST00000448141 MYO15BQ96JP2 1530 aa41.35■■■■■ 4.21
CCHCR1-206ENST00000448141 DCAF1Q9Y4B6 1507 aa41.22■■■■■ 4.19
CCHCR1-206ENST00000448141 UNC13AQ9UPW8 1703 aa40.83■■■■■ 4.13
CCHCR1-206ENST00000448141 SCRIBQ14160 1630 aa40.49■■■■■ 4.07
CCHCR1-206ENST00000448141 PABPN1Q86U42 306 aaKnown RBP eCLIP40.47■■■■■ 4.07
CCHCR1-206ENST00000448141 BICRAQ9NZM4 1560 aa40.44■■■■■ 4.06
CCHCR1-206ENST00000448141 SHROOM4Q9ULL8 1493 aa39.94■■■■□ 3.98
CCHCR1-206ENST00000448141 DNAJC5BQ9UF47 199 aa39.68■■■■□ 3.94
CCHCR1-206ENST00000448141 EIF4G1Q04637 1599 aaKnown RBP39.36■■■■□ 3.89
CCHCR1-206ENST00000448141 CC2D2AQ9P2K1 1620 aa39.2■■■■□ 3.87
CCHCR1-206ENST00000448141 CECR2Q9BXF3 1484 aa38.9■■■■□ 3.82
CCHCR1-206ENST00000448141 SMARCA4P51532 1647 aa38.71■■■■□ 3.79
CCHCR1-206ENST00000448141 BAZ1AQ9NRL2 1556 aaPredicted RBP38.64■■■■□ 3.78
CCHCR1-206ENST00000448141 MROH2BQ7Z745 1585 aa38.44■■■■□ 3.74
CCHCR1-206ENST00000448141 ATAD2BQ9ULI0 1458 aa38.43■■■■□ 3.74
CCHCR1-206ENST00000448141 SMARCA2P51531 1590 aa38.4■■■■□ 3.74
CCHCR1-206ENST00000448141 NCAPD3P42695 1498 aa38.39■■■■□ 3.74
CCHCR1-206ENST00000448141 PEG3Q9GZU2 1588 aa38.28■■■■□ 3.72
CCHCR1-206ENST00000448141 HMGXB3Q12766 1538 aa38.23■■■■□ 3.71
CCHCR1-206ENST00000448141 BAZ1BQ9UIG0 1483 aaKnown RBP38.15■■■■□ 3.7
CCHCR1-206ENST00000448141 WIZO95785 1651 aa38.07■■■■□ 3.68
CCHCR1-206ENST00000448141 RSF1Q96T23 1441 aaPredicted RBP37.99■■■■□ 3.67
CCHCR1-206ENST00000448141 TOP2AP11388 1531 aaKnown RBP37.62■■■■□ 3.61
CCHCR1-206ENST00000448141 NESP48681 1621 aa37.51■■■■□ 3.6
CCHCR1-206ENST00000448141 LAMC3Q9Y6N6 1575 aa37.41■■■■□ 3.58
CCHCR1-206ENST00000448141 ERCC6Q03468 1493 aa37.33■■■■□ 3.57
CCHCR1-206ENST00000448141 CADPSQ9ULU8 1353 aa37.27■■■■□ 3.56
CCHCR1-206ENST00000448141 CCDC88BA6NC98 1476 aa37.17■■■■□ 3.54
CCHCR1-206ENST00000448141 KIF21AQ7Z4S6 1674 aa37.12■■■■□ 3.53
CCHCR1-206ENST00000448141 PDS5BQ9NTI5 1447 aa37.12■■■■□ 3.53
CCHCR1-206ENST00000448141 SUPT5HO00267 1087 aaKnown RBP37.1■■■■□ 3.53
CCHCR1-206ENST00000448141 CFTRP13569 1480 aa37.07■■■■□ 3.53
CCHCR1-206ENST00000448141 THOC2Q8NI27 1593 aaKnown RBP36.94■■■■□ 3.5
CCHCR1-206ENST00000448141 PRDM2Q13029 1718 aa36.9■■■■□ 3.5
CCHCR1-206ENST00000448141 CUX2O14529 1486 aa36.88■■■■□ 3.5
CCHCR1-206ENST00000448141 FANCD2Q9BXW9 1451 aa36.88■■■■□ 3.49
CCHCR1-206ENST00000448141 CEP164Q9UPV0 1460 aa36.83■■■■□ 3.49
CCHCR1-206ENST00000448141 MRC2Q9UBG0 1479 aa36.76■■■■□ 3.48
CCHCR1-206ENST00000448141 WDR62O43379 1518 aa36.64■■■■□ 3.46
CCHCR1-206ENST00000448141 URB2Q14146 1524 aaKnown RBP36.52■■■■□ 3.44
CCHCR1-206ENST00000448141 TOPBP1Q92547 1522 aa36.29■■■■□ 3.4
CCHCR1-206ENST00000448141 DNMBPQ6XZF7 1577 aa36.27■■■■□ 3.4
CCHCR1-206ENST00000448141 ABCC8Q09428 1581 aa36.27■■■■□ 3.4
CCHCR1-206ENST00000448141 CUX1P39880 1505 aa36.07■■■■□ 3.36
CCHCR1-206ENST00000448141 IFT140Q96RY7 1462 aa36.04■■■■□ 3.36
CCHCR1-206ENST00000448141 POLA1P09884 1462 aaPredicted RBP35.99■■■■□ 3.35
CCHCR1-206ENST00000448141 TARBP1Q13395 1621 aaKnown RBP35.93■■■■□ 3.34
CCHCR1-206ENST00000448141 FGD5Q6ZNL6 1462 aa35.92■■■■□ 3.34
CCHCR1-206ENST00000448141 ZNF608Q9ULD9 1512 aaPredicted RBP35.9■■■■□ 3.34
CCHCR1-206ENST00000448141 RAD54L2Q9Y4B4 1467 aa35.85■■■■□ 3.33
CCHCR1-206ENST00000448141 SOGA1O94964 1423 aa35.83■■■■□ 3.33
CCHCR1-206ENST00000448141 WRNQ14191 1432 aaPredicted RBP eCLIP35.83■■■■□ 3.33
CCHCR1-206ENST00000448141 SYNJ1O43426 1573 aa35.79■■■■□ 3.32
CCHCR1-206ENST00000448141 EIF4G3O43432 1585 aaKnown RBP35.79■■■■□ 3.32
CCHCR1-206ENST00000448141 BIVM-ERCC5R4GMW8 1640 aa35.79■■■■□ 3.32
CCHCR1-206ENST00000448141 TOP2BQ02880 1626 aa35.77■■■■□ 3.32
CCHCR1-206ENST00000448141 AQRO60306 1485 aaKnown RBP eCLIP35.69■■■■□ 3.32e-10■■■■■ 47.9
CCHCR1-206ENST00000448141 DNAJC5Q9H3Z4 198 aa35.67■■■■□ 3.3
CCHCR1-206ENST00000448141 WDR97A6NE52 1622 aa35.67■■■■□ 3.3
CCHCR1-206ENST00000448141 TDRD9Q8NDG6 1382 aaKnown RBP35.64■■■■□ 3.3
CCHCR1-206ENST00000448141 ABCA10Q8WWZ4 1543 aa35.55■■■■□ 3.28
CCHCR1-206ENST00000448141 ABCA5Q8WWZ7 1642 aa35.45■■■■□ 3.27
CCHCR1-206ENST00000448141 PBRM1Q86U86 1689 aa35.43■■■■□ 3.26
CCHCR1-206ENST00000448141 GAPVD1Q14C86 1478 aa35.43■■■■□ 3.26
CCHCR1-206ENST00000448141 GRIN2BQ13224 1484 aa35.41■■■■□ 3.26
CCHCR1-206ENST00000448141 SNAPC4Q5SXM2 1469 aa35.38■■■■□ 3.25
CCHCR1-206ENST00000448141 CHD1O14646 1710 aa35.37■■■■□ 3.25
CCHCR1-206ENST00000448141 OSCARQ8IYS5 282 aa35.36■■■■□ 3.25
CCHCR1-206ENST00000448141 MAGI1Q96QZ7 1491 aaPredicted RBP35.31■■■■□ 3.24
CCHCR1-206ENST00000448141 FBLN2P98095 1184 aa35.26■■■■□ 3.24
CCHCR1-206ENST00000448141 SYNJ2O15056 1496 aa35.18■■■■□ 3.22
CCHCR1-206ENST00000448141 CHMP7Q8WUX9 453 aaPredicted RBP35.15■■■■□ 3.22
CCHCR1-206ENST00000448141 ERICH3Q5RHP9 1530 aa35.14■■■■□ 3.22
CCHCR1-206ENST00000448141 ADAMTS12P58397 1594 aa35.11■■■■□ 3.21
CCHCR1-206ENST00000448141 KIF27Q86VH2 1401 aa35.06■■■■□ 3.2
CCHCR1-206ENST00000448141 FHAD1B1AJZ9 1412 aa35.01■■■■□ 3.2
CCHCR1-206ENST00000448141 TRIM41Q8WV44 630 aa35.01■■■■□ 3.2
CCHCR1-206ENST00000448141 GRIN2AQ12879 1464 aa34.97■■■■□ 3.19
CCHCR1-206ENST00000448141 CLASP1Q7Z460 1538 aa34.92■■■■□ 3.18
CCHCR1-206ENST00000448141 IGF1RP08069 1367 aa34.9■■■■□ 3.18
CCHCR1-206ENST00000448141 CUL7Q14999 1698 aa34.87■■■■□ 3.17
CCHCR1-206ENST00000448141 RIMBP3CA6NJZ7 1639 aa34.85■■■■□ 3.17
CCHCR1-206ENST00000448141 RIMBP3BA6NNM3 1639 aa34.85■■■■□ 3.17
CCHCR1-206ENST00000448141 RIMBP3Q9UFD9 1639 aa34.85■■■■□ 3.17
CCHCR1-206ENST00000448141 ARHGEF11O15085 1522 aa34.82■■■■□ 3.16
CCHCR1-206ENST00000448141 CEP170Q5SW79 1584 aa34.82■■■■□ 3.16
CCHCR1-206ENST00000448141 RUSC2Q8N2Y8 1516 aa34.81■■■■□ 3.16
CCHCR1-206ENST00000448141 NUP160Q12769 1436 aa34.79■■■■□ 3.16
CCHCR1-206ENST00000448141 CARMIL1Q5VZK9 1371 aa34.71■■■■□ 3.15
CCHCR1-206ENST00000448141 CHIC1Q5VXU3 224 aa34.62■■■■□ 3.13
CCHCR1-206ENST00000448141 SHROOM2Q13796 1616 aa34.56■■■■□ 3.12
CCHCR1-206ENST00000448141 ARAP1Q96P48 1450 aa34.55■■■■□ 3.12
CCHCR1-206ENST00000448141 RAPGEF2Q9Y4G8 1499 aa34.52■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms