RNA–Protein interactions for RNA: ENST00000447784.1

LINC00408-201, long intergenic non-protein coding RNA 408, humanhuman

TSL 5 BASIC

Gene LINC00408, Length 560 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00408-201ENST00000447784 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
LINC00408-201ENST00000447784 CCDC180Q9P1Z9 1646 aa24.62■■□□□ 1.53
LINC00408-201ENST00000447784 ABCC9O60706 1549 aa24.27■■□□□ 1.48
LINC00408-201ENST00000447784 RB1CC1Q8TDY2 1594 aa23.29■■□□□ 1.32
LINC00408-201ENST00000447784 NACADO15069 1562 aa23.25■■□□□ 1.31
LINC00408-201ENST00000447784 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
LINC00408-201ENST00000447784 AEBP2Q6ZN18 517 aaPredicted RBP23.17■■□□□ 1.3
LINC00408-201ENST00000447784 MYO15BQ96JP2 1530 aa23.13■■□□□ 1.29
LINC00408-201ENST00000447784 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
LINC00408-201ENST00000447784 DCAF1Q9Y4B6 1507 aa22.94■■□□□ 1.26
LINC00408-201ENST00000447784 PABPN1Q86U42 306 aaKnown RBP eCLIP22.68■■□□□ 1.22
LINC00408-201ENST00000447784 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
LINC00408-201ENST00000447784 BICRAQ9NZM4 1560 aa22.57■■□□□ 1.2
LINC00408-201ENST00000447784 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
LINC00408-201ENST00000447784 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
LINC00408-201ENST00000447784 SHROOM4Q9ULL8 1493 aa22.41■■□□□ 1.18
LINC00408-201ENST00000447784 CHIC1Q5VXU3 224 aa22.13■■□□□ 1.13
LINC00408-201ENST00000447784 EIF4G1Q04637 1599 aaKnown RBP22■■□□□ 1.11
LINC00408-201ENST00000447784 CC2D2AQ9P2K1 1620 aa21.92■■□□□ 1.1
LINC00408-201ENST00000447784 CECR2Q9BXF3 1484 aa21.85■■□□□ 1.09
LINC00408-201ENST00000447784 NCAPD3P42695 1498 aa21.5■■□□□ 1.03
LINC00408-201ENST00000447784 BAZ1AQ9NRL2 1556 aaPredicted RBP21.47■■□□□ 1.03
LINC00408-201ENST00000447784 SMARCA4P51532 1647 aa21.47■■□□□ 1.03
LINC00408-201ENST00000447784 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.03
LINC00408-201ENST00000447784 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
LINC00408-201ENST00000447784 HMGXB3Q12766 1538 aa21.33■■□□□ 1
LINC00408-201ENST00000447784 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
LINC00408-201ENST00000447784 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
LINC00408-201ENST00000447784 BAZ1BQ9UIG0 1483 aaKnown RBP21.25■□□□□ 0.99
LINC00408-201ENST00000447784 RSF1Q96T23 1441 aaPredicted RBP21.06■□□□□ 0.96
LINC00408-201ENST00000447784 WIZO95785 1651 aa21.02■□□□□ 0.95
LINC00408-201ENST00000447784 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
LINC00408-201ENST00000447784 NESP48681 1621 aa20.94■□□□□ 0.94
LINC00408-201ENST00000447784 LAMC3Q9Y6N6 1575 aa20.9■□□□□ 0.94
LINC00408-201ENST00000447784 CADPSQ9ULU8 1353 aa20.86■□□□□ 0.93
LINC00408-201ENST00000447784 TOP2AP11388 1531 aaKnown RBP20.84■□□□□ 0.93
LINC00408-201ENST00000447784 CUX2O14529 1486 aa20.81■□□□□ 0.92
LINC00408-201ENST00000447784 PDS5BQ9NTI5 1447 aa20.81■□□□□ 0.92
LINC00408-201ENST00000447784 SUPT5HO00267 1087 aaKnown RBP20.73■□□□□ 0.91
LINC00408-201ENST00000447784 CFTRP13569 1480 aa20.69■□□□□ 0.9
LINC00408-201ENST00000447784 THOC2Q8NI27 1593 aaKnown RBP20.64■□□□□ 0.9
LINC00408-201ENST00000447784 CCDC88BA6NC98 1476 aa20.62■□□□□ 0.89
LINC00408-201ENST00000447784 KIF21AQ7Z4S6 1674 aa20.61■□□□□ 0.89
LINC00408-201ENST00000447784 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.89
LINC00408-201ENST00000447784 MRC2Q9UBG0 1479 aa20.57■□□□□ 0.88
LINC00408-201ENST00000447784 CEP164Q9UPV0 1460 aa20.57■□□□□ 0.88
LINC00408-201ENST00000447784 WDR62O43379 1518 aa20.5■□□□□ 0.87
LINC00408-201ENST00000447784 DNAJC5Q9H3Z4 198 aa20.39■□□□□ 0.85
LINC00408-201ENST00000447784 URB2Q14146 1524 aaKnown RBP20.37■□□□□ 0.85
LINC00408-201ENST00000447784 PRDM2Q13029 1718 aa20.34■□□□□ 0.85
LINC00408-201ENST00000447784 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
LINC00408-201ENST00000447784 TOPBP1Q92547 1522 aa20.22■□□□□ 0.83
LINC00408-201ENST00000447784 DNMBPQ6XZF7 1577 aa20.17■□□□□ 0.82
LINC00408-201ENST00000447784 IFT140Q96RY7 1462 aa20.17■□□□□ 0.82
LINC00408-201ENST00000447784 ZNF608Q9ULD9 1512 aaPredicted RBP20.05■□□□□ 0.8
LINC00408-201ENST00000447784 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
LINC00408-201ENST00000447784 CUX1P39880 1505 aa20■□□□□ 0.79
LINC00408-201ENST00000447784 SOGA1O94964 1423 aa19.99■□□□□ 0.79
LINC00408-201ENST00000447784 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
LINC00408-201ENST00000447784 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
LINC00408-201ENST00000447784 OSCARQ8IYS5 282 aa19.96■□□□□ 0.79
LINC00408-201ENST00000447784 RAD54L2Q9Y4B4 1467 aa19.94■□□□□ 0.78
LINC00408-201ENST00000447784 AQRO60306 1485 aaKnown RBP eCLIP19.93■□□□□ 0.78
LINC00408-201ENST00000447784 EIF4G3O43432 1585 aaKnown RBP19.92■□□□□ 0.78
LINC00408-201ENST00000447784 TDRD9Q8NDG6 1382 aaKnown RBP19.88■□□□□ 0.77
LINC00408-201ENST00000447784 WDR97A6NE52 1622 aa19.87■□□□□ 0.77
LINC00408-201ENST00000447784 WRNQ14191 1432 aaPredicted RBP eCLIP19.85■□□□□ 0.77
LINC00408-201ENST00000447784 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
LINC00408-201ENST00000447784 TOP2BQ02880 1626 aa19.78■□□□□ 0.76
LINC00408-201ENST00000447784 GRIN2BQ13224 1484 aa19.77■□□□□ 0.76
LINC00408-201ENST00000447784 BIVM-ERCC5R4GMW8 1640 aa19.76■□□□□ 0.75
LINC00408-201ENST00000447784 GAPVD1Q14C86 1478 aa19.74■□□□□ 0.75
LINC00408-201ENST00000447784 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
LINC00408-201ENST00000447784 SNAPC4Q5SXM2 1469 aa19.73■□□□□ 0.75
LINC00408-201ENST00000447784 MAGI1Q96QZ7 1491 aaPredicted RBP19.73■□□□□ 0.75
LINC00408-201ENST00000447784 FBLN2P98095 1184 aa19.72■□□□□ 0.75
LINC00408-201ENST00000447784 CHMP7Q8WUX9 453 aaPredicted RBP19.68■□□□□ 0.74
LINC00408-201ENST00000447784 ABCA5Q8WWZ7 1642 aa19.67■□□□□ 0.74
LINC00408-201ENST00000447784 SYNJ2O15056 1496 aa19.66■□□□□ 0.74
LINC00408-201ENST00000447784 SENP3Q9H4L4 574 aaPredicted RBP19.64■□□□□ 0.73
LINC00408-201ENST00000447784 CHD1O14646 1710 aa19.63■□□□□ 0.73
LINC00408-201ENST00000447784 PBRM1Q86U86 1689 aa19.59■□□□□ 0.73
LINC00408-201ENST00000447784 TRIM41Q8WV44 630 aa19.58■□□□□ 0.72
LINC00408-201ENST00000447784 ARHGEF11O15085 1522 aa19.56■□□□□ 0.72
LINC00408-201ENST00000447784 ERICH3Q5RHP9 1530 aa19.55■□□□□ 0.72
LINC00408-201ENST00000447784 RIMBP3CA6NJZ7 1639 aa19.54■□□□□ 0.72
LINC00408-201ENST00000447784 RIMBP3BA6NNM3 1639 aa19.54■□□□□ 0.72
LINC00408-201ENST00000447784 RIMBP3Q9UFD9 1639 aa19.54■□□□□ 0.72
LINC00408-201ENST00000447784 FHAD1B1AJZ9 1412 aa19.53■□□□□ 0.72
LINC00408-201ENST00000447784 CLASP1Q7Z460 1538 aa19.52■□□□□ 0.72
LINC00408-201ENST00000447784 GRIN2AQ12879 1464 aa19.5■□□□□ 0.71
LINC00408-201ENST00000447784 ADAMTS12P58397 1594 aa19.49■□□□□ 0.71
LINC00408-201ENST00000447784 PHF23Q9BUL5 403 aaPredicted RBP19.48■□□□□ 0.71
LINC00408-201ENST00000447784 KIF27Q86VH2 1401 aa19.47■□□□□ 0.71
LINC00408-201ENST00000447784 NUP160Q12769 1436 aa19.44■□□□□ 0.7
LINC00408-201ENST00000447784 CYB5RLQ6IPT4 315 aa19.43■□□□□ 0.7
LINC00408-201ENST00000447784 IGF1RP08069 1367 aa19.42■□□□□ 0.7
LINC00408-201ENST00000447784 ARAP1Q96P48 1450 aa19.41■□□□□ 0.7
LINC00408-201ENST00000447784 CEP170Q5SW79 1584 aa19.37■□□□□ 0.69
LINC00408-201ENST00000447784 CUL7Q14999 1698 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms