RNA–Protein interactions for RNA: ENST00000446852.5

SMC6-206, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 1 (best)

Gene SMC6, Length 2,460 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-206ENST00000446852 NISCHQ9Y2I1 1504 aa38.56■■■■□ 3.76
SMC6-206ENST00000446852 CCDC180Q9P1Z9 1646 aa33.37■■■□□ 2.93
SMC6-206ENST00000446852 ZCCHC6Q5VYS8 1495 aaKnown RBP32.49■■■□□ 2.79
SMC6-206ENST00000446852 SHROOM4Q9ULL8 1493 aa31.93■■■□□ 2.7
SMC6-206ENST00000446852 DCAF1Q9Y4B6 1507 aa31.79■■■□□ 2.68
SMC6-206ENST00000446852 DCAF8L2P0C7V8 631 aa31.75■■■□□ 2.67
SMC6-206ENST00000446852 ABCC9O60706 1549 aa31.24■■■□□ 2.59
SMC6-206ENST00000446852 MYO15BQ96JP2 1530 aa31.21■■■□□ 2.59
SMC6-206ENST00000446852 NACADO15069 1562 aa30.94■■■□□ 2.54
SMC6-206ENST00000446852 SUPT5HO00267 1087 aaKnown RBP30.9■■■□□ 2.54
SMC6-206ENST00000446852 SCRIBQ14160 1630 aa30.88■■■□□ 2.53
SMC6-206ENST00000446852 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
SMC6-206ENST00000446852 UNC13AQ9UPW8 1703 aa30.18■■■□□ 2.42
SMC6-206ENST00000446852 RSF1Q96T23 1441 aaPredicted RBP30.11■■■□□ 2.41
SMC6-206ENST00000446852 CECR2Q9BXF3 1484 aa30.01■■■□□ 2.39
SMC6-206ENST00000446852 MROH2BQ7Z745 1585 aa29.87■■■□□ 2.37
SMC6-206ENST00000446852 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
SMC6-206ENST00000446852 BICRAQ9NZM4 1560 aa29.76■■■□□ 2.35
SMC6-206ENST00000446852 BAZ1AQ9NRL2 1556 aaPredicted RBP29.71■■■□□ 2.35
SMC6-206ENST00000446852 WIZO95785 1651 aa29.7■■■□□ 2.35
SMC6-206ENST00000446852 SMARCA4P51532 1647 aa29.58■■■□□ 2.33
SMC6-206ENST00000446852 PABPN1Q86U42 306 aaKnown RBP eCLIP29.56■■■□□ 2.32
SMC6-206ENST00000446852 TOP2AP11388 1531 aaKnown RBP29.29■■■□□ 2.28
SMC6-206ENST00000446852 PEG3Q9GZU2 1588 aa29.14■■■□□ 2.26
SMC6-206ENST00000446852 SMARCA2P51531 1590 aa29.09■■■□□ 2.25
SMC6-206ENST00000446852 EIF4G1Q04637 1599 aaKnown RBP29.08■■■□□ 2.25
SMC6-206ENST00000446852 CCDC88BA6NC98 1476 aa29.04■■■□□ 2.24
SMC6-206ENST00000446852 TRIM41Q8WV44 630 aa28.94■■■□□ 2.22
SMC6-206ENST00000446852 ATAD2BQ9ULI0 1458 aa28.94■■■□□ 2.22
SMC6-206ENST00000446852 BAZ1BQ9UIG0 1483 aaKnown RBP28.8■■■□□ 2.2
SMC6-206ENST00000446852 LOC105371045A0A1W2PR82 267 aa28.75■■■□□ 2.19
SMC6-206ENST00000446852 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
SMC6-206ENST00000446852 HMGXB3Q12766 1538 aa28.58■■■□□ 2.17
SMC6-206ENST00000446852 NCAPD3P42695 1498 aa28.56■■■□□ 2.16
SMC6-206ENST00000446852 FAM9AQ8IZU1 332 aaPredicted RBP28.53■■■□□ 2.16
SMC6-206ENST00000446852 WRNQ14191 1432 aaPredicted RBP eCLIP28.31■■■□□ 2.12
SMC6-206ENST00000446852 CC2D2AQ9P2K1 1620 aa28.27■■■□□ 2.12
SMC6-206ENST00000446852 SYNJ1O43426 1573 aa28.27■■■□□ 2.12
SMC6-206ENST00000446852 EHMT2Q96KQ7 1210 aa28.19■■■□□ 2.1
SMC6-206ENST00000446852 SOGA1O94964 1423 aa28.19■■■□□ 2.1
SMC6-206ENST00000446852 RUSC2Q8N2Y8 1516 aa28.09■■■□□ 2.09
SMC6-206ENST00000446852 CFTRP13569 1480 aa28.09■■■□□ 2.09
SMC6-206ENST00000446852 EEA1Q15075 1411 aa28.06■■■□□ 2.08
SMC6-206ENST00000446852 TOP2BQ02880 1626 aa28.05■■■□□ 2.08
SMC6-206ENST00000446852 PRDM2Q13029 1718 aa28.05■■■□□ 2.08
SMC6-206ENST00000446852 BIVM-ERCC5R4GMW8 1640 aa28.02■■■□□ 2.08
SMC6-206ENST00000446852 CSRNP3Q8WYN3 585 aa27.93■■■□□ 2.06
SMC6-206ENST00000446852 PCGF6Q9BYE7 350 aa27.9■■■□□ 2.06
SMC6-206ENST00000446852 CUX1P39880 1505 aa27.89■■■□□ 2.05
SMC6-206ENST00000446852 CADPSQ9ULU8 1353 aa27.87■■■□□ 2.05
SMC6-206ENST00000446852 GOLGA3Q08378 1498 aa27.77■■■□□ 2.04
SMC6-206ENST00000446852 KIF21BO75037 1637 aa27.77■■■□□ 2.04
SMC6-206ENST00000446852 TNIKQ9UKE5 1360 aa27.75■■■□□ 2.03
SMC6-206ENST00000446852 CEP164Q9UPV0 1460 aa27.72■■■□□ 2.03
SMC6-206ENST00000446852 CEP162Q5TB80 1403 aa27.71■■■□□ 2.03
SMC6-206ENST00000446852 TRIM26Q12899 539 aaPredicted RBP27.68■■■□□ 2.02
SMC6-206ENST00000446852 UBTFP17480 764 aaKnown RBP27.64■■■□□ 2.02
SMC6-206ENST00000446852 NESP48681 1621 aa27.61■■■□□ 2.01
SMC6-206ENST00000446852 FANCD2Q9BXW9 1451 aa27.61■■■□□ 2.01
SMC6-206ENST00000446852 RAPGEF2Q9Y4G8 1499 aa27.58■■■□□ 2.01
SMC6-206ENST00000446852 LAMC3Q9Y6N6 1575 aa27.53■■■□□ 2
SMC6-206ENST00000446852 DNAJC5BQ9UF47 199 aa27.52■■■□□ 2
SMC6-206ENST00000446852 KIF27Q86VH2 1401 aa27.51■■□□□ 1.99
SMC6-206ENST00000446852 FGD5Q6ZNL6 1462 aa27.49■■□□□ 1.99
SMC6-206ENST00000446852 PRXQ9BXM0 1461 aa27.48■■□□□ 1.99
SMC6-206ENST00000446852 ERICH3Q5RHP9 1530 aa27.47■■□□□ 1.99
SMC6-206ENST00000446852 DNMBPQ6XZF7 1577 aa27.44■■□□□ 1.98
SMC6-206ENST00000446852 HRCP23327 699 aa27.44■■□□□ 1.98
SMC6-206ENST00000446852 PPARGC1BQ86YN6 1023 aaKnown RBP27.41■■□□□ 1.98
SMC6-206ENST00000446852 CUX2O14529 1486 aa27.39■■□□□ 1.98
SMC6-206ENST00000446852 TOPBP1Q92547 1522 aa27.38■■□□□ 1.97
SMC6-206ENST00000446852 CLIP1P30622 1438 aa27.37■■□□□ 1.97
SMC6-206ENST00000446852 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
SMC6-206ENST00000446852 POLA1P09884 1462 aaPredicted RBP27.29■■□□□ 1.96
SMC6-206ENST00000446852 URB2Q14146 1524 aaKnown RBP27.28■■□□□ 1.96
SMC6-206ENST00000446852 PDS5BQ9NTI5 1447 aa27.26■■□□□ 1.95
SMC6-206ENST00000446852 IGF1RP08069 1367 aa27.25■■□□□ 1.95
SMC6-206ENST00000446852 RAD54L2Q9Y4B4 1467 aa27.24■■□□□ 1.95
SMC6-206ENST00000446852 ABCA10Q8WWZ4 1543 aa27.21■■□□□ 1.95
SMC6-206ENST00000446852 VPS8Q8N3P4 1428 aa27.19■■□□□ 1.94
SMC6-206ENST00000446852 RANGAP1P46060 587 aaPredicted RBP27.17■■□□□ 1.94
SMC6-206ENST00000446852 WDR97A6NE52 1622 aa27.17■■□□□ 1.94
SMC6-206ENST00000446852 CARMIL1Q5VZK9 1371 aa27.11■■□□□ 1.93
SMC6-206ENST00000446852 TTBK1Q5TCY1 1321 aaPredicted RBP27.1■■□□□ 1.93
SMC6-206ENST00000446852 ARAP1Q96P48 1450 aa27.08■■□□□ 1.93
SMC6-206ENST00000446852 ABCA5Q8WWZ7 1642 aa27.01■■□□□ 1.91
SMC6-206ENST00000446852 CUL7Q14999 1698 aa27.01■■□□□ 1.91
SMC6-206ENST00000446852 ARHGAP35Q9NRY4 1499 aa26.98■■□□□ 1.91
SMC6-206ENST00000446852 TARBP1Q13395 1621 aaKnown RBP26.96■■□□□ 1.91
SMC6-206ENST00000446852 MRC2Q9UBG0 1479 aa26.93■■□□□ 1.9
SMC6-206ENST00000446852 TDRD9Q8NDG6 1382 aaKnown RBP26.91■■□□□ 1.9
SMC6-206ENST00000446852 GAPVD1Q14C86 1478 aa26.88■■□□□ 1.89
SMC6-206ENST00000446852 APLP2Q06481 763 aa26.85■■□□□ 1.89
SMC6-206ENST00000446852 CTTNBP2Q8WZ74 1663 aa26.85■■□□□ 1.89
SMC6-206ENST00000446852 WDR62O43379 1518 aa26.79■■□□□ 1.88
SMC6-206ENST00000446852 PBRM1Q86U86 1689 aa26.78■■□□□ 1.88
SMC6-206ENST00000446852 ZEB1P37275 1124 aaPredicted RBP26.73■■□□□ 1.87
SMC6-206ENST00000446852 AQRO60306 1485 aaKnown RBP eCLIP26.67■■□□□ 1.862e-6■■■□□ 16
SMC6-206ENST00000446852 KANK4Q5T7N3 995 aaPredicted RBP26.67■■□□□ 1.86
SMC6-206ENST00000446852 ERCC6Q03468 1493 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms