RNA–Protein interactions for RNA: ENST00000442572.1

CDCA4P3-201, Transcript of cell division cycle associated 4 pseudogene 3, humanhuman

BASIC

Gene CDCA4P3, Length 689 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4P3-201ENST00000442572 NISCHQ9Y2I1 1504 aa30.67■■■□□ 2.5
CDCA4P3-201ENST00000442572 CCDC180Q9P1Z9 1646 aa27.43■■□□□ 1.98
CDCA4P3-201ENST00000442572 ABCC9O60706 1549 aa26.67■■□□□ 1.86
CDCA4P3-201ENST00000442572 RB1CC1Q8TDY2 1594 aa25.78■■□□□ 1.72
CDCA4P3-201ENST00000442572 NACADO15069 1562 aa25.75■■□□□ 1.71
CDCA4P3-201ENST00000442572 MYO15BQ96JP2 1530 aa25.63■■□□□ 1.69
CDCA4P3-201ENST00000442572 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
CDCA4P3-201ENST00000442572 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
CDCA4P3-201ENST00000442572 DCAF1Q9Y4B6 1507 aa25.47■■□□□ 1.67
CDCA4P3-201ENST00000442572 UNC13AQ9UPW8 1703 aa25.23■■□□□ 1.63
CDCA4P3-201ENST00000442572 BICRAQ9NZM4 1560 aa24.95■■□□□ 1.58
CDCA4P3-201ENST00000442572 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
CDCA4P3-201ENST00000442572 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
CDCA4P3-201ENST00000442572 SHROOM4Q9ULL8 1493 aa24.82■■□□□ 1.56
CDCA4P3-201ENST00000442572 DNAJC5BQ9UF47 199 aa24.47■■□□□ 1.51
CDCA4P3-201ENST00000442572 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
CDCA4P3-201ENST00000442572 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
CDCA4P3-201ENST00000442572 CECR2Q9BXF3 1484 aa24.02■■□□□ 1.44
CDCA4P3-201ENST00000442572 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
CDCA4P3-201ENST00000442572 BAZ1AQ9NRL2 1556 aaPredicted RBP23.82■■□□□ 1.4
CDCA4P3-201ENST00000442572 SMARCA2P51531 1590 aa23.73■■□□□ 1.39
CDCA4P3-201ENST00000442572 NCAPD3P42695 1498 aa23.71■■□□□ 1.39
CDCA4P3-201ENST00000442572 ATAD2BQ9ULI0 1458 aa23.67■■□□□ 1.38
CDCA4P3-201ENST00000442572 PEG3Q9GZU2 1588 aa23.65■■□□□ 1.38
CDCA4P3-201ENST00000442572 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
CDCA4P3-201ENST00000442572 MROH2BQ7Z745 1585 aa23.58■■□□□ 1.37
CDCA4P3-201ENST00000442572 BAZ1BQ9UIG0 1483 aaKnown RBP23.49■■□□□ 1.35
CDCA4P3-201ENST00000442572 WIZO95785 1651 aa23.35■■□□□ 1.33
CDCA4P3-201ENST00000442572 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
CDCA4P3-201ENST00000442572 LAMC3Q9Y6N6 1575 aa23.14■■□□□ 1.3
CDCA4P3-201ENST00000442572 TOP2AP11388 1531 aaKnown RBP23.14■■□□□ 1.3
CDCA4P3-201ENST00000442572 NESP48681 1621 aa23.05■■□□□ 1.28
CDCA4P3-201ENST00000442572 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
CDCA4P3-201ENST00000442572 CADPSQ9ULU8 1353 aa22.98■■□□□ 1.27
CDCA4P3-201ENST00000442572 PDS5BQ9NTI5 1447 aa22.94■■□□□ 1.26
CDCA4P3-201ENST00000442572 CUX2O14529 1486 aa22.91■■□□□ 1.26
CDCA4P3-201ENST00000442572 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
CDCA4P3-201ENST00000442572 CFTRP13569 1480 aa22.85■■□□□ 1.25
CDCA4P3-201ENST00000442572 PRDM2Q13029 1718 aa22.84■■□□□ 1.25
CDCA4P3-201ENST00000442572 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
CDCA4P3-201ENST00000442572 CCDC88BA6NC98 1476 aa22.8■■□□□ 1.24
CDCA4P3-201ENST00000442572 CEP164Q9UPV0 1460 aa22.72■■□□□ 1.23
CDCA4P3-201ENST00000442572 FANCD2Q9BXW9 1451 aa22.71■■□□□ 1.23
CDCA4P3-201ENST00000442572 MRC2Q9UBG0 1479 aa22.69■■□□□ 1.22
CDCA4P3-201ENST00000442572 WDR62O43379 1518 aa22.65■■□□□ 1.22
CDCA4P3-201ENST00000442572 AEBP2Q6ZN18 517 aaPredicted RBP22.64■■□□□ 1.21
CDCA4P3-201ENST00000442572 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
CDCA4P3-201ENST00000442572 URB2Q14146 1524 aaKnown RBP22.47■■□□□ 1.19
CDCA4P3-201ENST00000442572 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
CDCA4P3-201ENST00000442572 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
CDCA4P3-201ENST00000442572 TOPBP1Q92547 1522 aa22.35■■□□□ 1.17
CDCA4P3-201ENST00000442572 IFT140Q96RY7 1462 aa22.25■■□□□ 1.15
CDCA4P3-201ENST00000442572 DNAJC5Q9H3Z4 198 aa22.19■■□□□ 1.14
CDCA4P3-201ENST00000442572 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
CDCA4P3-201ENST00000442572 POLA1P09884 1462 aaPredicted RBP22.15■■□□□ 1.14
CDCA4P3-201ENST00000442572 CUX1P39880 1505 aa22.14■■□□□ 1.13
CDCA4P3-201ENST00000442572 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
CDCA4P3-201ENST00000442572 FGD5Q6ZNL6 1462 aa22.08■■□□□ 1.12
CDCA4P3-201ENST00000442572 EIF4G3O43432 1585 aaKnown RBP22.07■■□□□ 1.12
CDCA4P3-201ENST00000442572 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
CDCA4P3-201ENST00000442572 SOGA1O94964 1423 aa22.05■■□□□ 1.12
CDCA4P3-201ENST00000442572 BIVM-ERCC5R4GMW8 1640 aa22.03■■□□□ 1.12
CDCA4P3-201ENST00000442572 TOP2BQ02880 1626 aa22■■□□□ 1.11
CDCA4P3-201ENST00000442572 RAD54L2Q9Y4B4 1467 aa21.98■■□□□ 1.11
CDCA4P3-201ENST00000442572 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
CDCA4P3-201ENST00000442572 AQRO60306 1485 aaKnown RBP eCLIP21.93■■□□□ 1.1
CDCA4P3-201ENST00000442572 SYNJ1O43426 1573 aa21.92■■□□□ 1.1
CDCA4P3-201ENST00000442572 ABCA10Q8WWZ4 1543 aa21.9■■□□□ 1.1
CDCA4P3-201ENST00000442572 OSCARQ8IYS5 282 aa21.87■■□□□ 1.09
CDCA4P3-201ENST00000442572 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
CDCA4P3-201ENST00000442572 ABCA5Q8WWZ7 1642 aa21.85■■□□□ 1.09
CDCA4P3-201ENST00000442572 PBRM1Q86U86 1689 aa21.85■■□□□ 1.09
CDCA4P3-201ENST00000442572 CHD1O14646 1710 aa21.84■■□□□ 1.09
CDCA4P3-201ENST00000442572 GRIN2BQ13224 1484 aa21.83■■□□□ 1.09
CDCA4P3-201ENST00000442572 MAGI1Q96QZ7 1491 aaPredicted RBP21.82■■□□□ 1.08
CDCA4P3-201ENST00000442572 GAPVD1Q14C86 1478 aa21.81■■□□□ 1.08
CDCA4P3-201ENST00000442572 SNAPC4Q5SXM2 1469 aa21.77■■□□□ 1.07
CDCA4P3-201ENST00000442572 SYNJ2O15056 1496 aa21.71■■□□□ 1.07
CDCA4P3-201ENST00000442572 ERICH3Q5RHP9 1530 aa21.68■■□□□ 1.06
CDCA4P3-201ENST00000442572 FBLN2P98095 1184 aa21.64■■□□□ 1.05
CDCA4P3-201ENST00000442572 CHMP7Q8WUX9 453 aaPredicted RBP21.64■■□□□ 1.05
CDCA4P3-201ENST00000442572 ADAMTS12P58397 1594 aa21.61■■□□□ 1.05
CDCA4P3-201ENST00000442572 CLASP1Q7Z460 1538 aa21.57■■□□□ 1.04
CDCA4P3-201ENST00000442572 FHAD1B1AJZ9 1412 aa21.56■■□□□ 1.04
CDCA4P3-201ENST00000442572 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
CDCA4P3-201ENST00000442572 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
CDCA4P3-201ENST00000442572 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
CDCA4P3-201ENST00000442572 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
CDCA4P3-201ENST00000442572 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
CDCA4P3-201ENST00000442572 GRIN2AQ12879 1464 aa21.54■■□□□ 1.04
CDCA4P3-201ENST00000442572 ARHGEF11O15085 1522 aa21.53■■□□□ 1.04
CDCA4P3-201ENST00000442572 CUL7Q14999 1698 aa21.5■■□□□ 1.03
CDCA4P3-201ENST00000442572 NUP160Q12769 1436 aa21.46■■□□□ 1.03
CDCA4P3-201ENST00000442572 CEP170Q5SW79 1584 aa21.43■■□□□ 1.02
CDCA4P3-201ENST00000442572 IGF1RP08069 1367 aa21.41■■□□□ 1.02
CDCA4P3-201ENST00000442572 SHROOM2Q13796 1616 aa21.36■■□□□ 1.01
CDCA4P3-201ENST00000442572 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
CDCA4P3-201ENST00000442572 ARAP1Q96P48 1450 aa21.32■■□□□ 1
CDCA4P3-201ENST00000442572 RUSC2Q8N2Y8 1516 aa21.31■■□□□ 1
CDCA4P3-201ENST00000442572 CARMIL1Q5VZK9 1371 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms