RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 NISCHQ9Y2I1 1504 aa43.85■■■■■ 4.61
CPSF4-205ENST00000440514 CCDC180Q9P1Z9 1646 aa39.01■■■■□ 3.84
CPSF4-205ENST00000440514 ABCC9O60706 1549 aa38.09■■■■□ 3.69
CPSF4-205ENST00000440514 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
CPSF4-205ENST00000440514 NACADO15069 1562 aa36.59■■■■□ 3.45
CPSF4-205ENST00000440514 ZCCHC6Q5VYS8 1495 aaKnown RBP36.58■■■■□ 3.45
CPSF4-205ENST00000440514 DCAF8L2P0C7V8 631 aa36.53■■■■□ 3.44
CPSF4-205ENST00000440514 MYO15BQ96JP2 1530 aa36.36■■■■□ 3.41
CPSF4-205ENST00000440514 DCAF1Q9Y4B6 1507 aa36.26■■■■□ 3.4
CPSF4-205ENST00000440514 UNC13AQ9UPW8 1703 aa35.9■■■■□ 3.34
CPSF4-205ENST00000440514 SCRIBQ14160 1630 aa35.64■■■■□ 3.3
CPSF4-205ENST00000440514 BICRAQ9NZM4 1560 aa35.58■■■■□ 3.29
CPSF4-205ENST00000440514 PABPN1Q86U42 306 aaKnown RBP eCLIP35.55■■■■□ 3.28
CPSF4-205ENST00000440514 SHROOM4Q9ULL8 1493 aa35.14■■■■□ 3.22
CPSF4-205ENST00000440514 DNAJC5BQ9UF47 199 aa34.83■■■■□ 3.17
CPSF4-205ENST00000440514 EIF4G1Q04637 1599 aaKnown RBP34.62■■■■□ 3.13
CPSF4-205ENST00000440514 CC2D2AQ9P2K1 1620 aa34.46■■■■□ 3.11
CPSF4-205ENST00000440514 CECR2Q9BXF3 1484 aa34.19■■■■□ 3.06
CPSF4-205ENST00000440514 SMARCA4P51532 1647 aa34.06■■■■□ 3.04
CPSF4-205ENST00000440514 BAZ1AQ9NRL2 1556 aaPredicted RBP33.99■■■■□ 3.03
CPSF4-205ENST00000440514 MROH2BQ7Z745 1585 aa33.84■■■■□ 3.01
CPSF4-205ENST00000440514 ATAD2BQ9ULI0 1458 aa33.8■■■■□ 3
CPSF4-205ENST00000440514 SMARCA2P51531 1590 aa33.77■■■■□ 3
CPSF4-205ENST00000440514 NCAPD3P42695 1498 aa33.74■■■□□ 2.99
CPSF4-205ENST00000440514 PEG3Q9GZU2 1588 aa33.68■■■□□ 2.98
CPSF4-205ENST00000440514 HMGXB3Q12766 1538 aa33.64■■■□□ 2.98
CPSF4-205ENST00000440514 BAZ1BQ9UIG0 1483 aaKnown RBP33.55■■■□□ 2.96
CPSF4-205ENST00000440514 WIZO95785 1651 aa33.5■■■□□ 2.95
CPSF4-205ENST00000440514 RSF1Q96T23 1441 aaPredicted RBP33.43■■■□□ 2.94
CPSF4-205ENST00000440514 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
CPSF4-205ENST00000440514 NESP48681 1621 aa33■■■□□ 2.87
CPSF4-205ENST00000440514 LAMC3Q9Y6N6 1575 aa32.88■■■□□ 2.85
CPSF4-205ENST00000440514 ERCC6Q03468 1493 aa32.8■■■□□ 2.84
CPSF4-205ENST00000440514 CADPSQ9ULU8 1353 aa32.75■■■□□ 2.83
CPSF4-205ENST00000440514 CCDC88BA6NC98 1476 aa32.69■■■□□ 2.82
CPSF4-205ENST00000440514 KIF21AQ7Z4S6 1674 aa32.66■■■□□ 2.82
CPSF4-205ENST00000440514 SUPT5HO00267 1087 aaKnown RBP32.61■■■□□ 2.81
CPSF4-205ENST00000440514 PDS5BQ9NTI5 1447 aa32.6■■■□□ 2.81
CPSF4-205ENST00000440514 CFTRP13569 1480 aa32.6■■■□□ 2.81
CPSF4-205ENST00000440514 THOC2Q8NI27 1593 aaKnown RBP32.52■■■□□ 2.8
CPSF4-205ENST00000440514 PRDM2Q13029 1718 aa32.46■■■□□ 2.79
CPSF4-205ENST00000440514 FANCD2Q9BXW9 1451 aa32.43■■■□□ 2.78
CPSF4-205ENST00000440514 CUX2O14529 1486 aa32.4■■■□□ 2.78
CPSF4-205ENST00000440514 CEP164Q9UPV0 1460 aa32.4■■■□□ 2.78
CPSF4-205ENST00000440514 MRC2Q9UBG0 1479 aa32.34■■■□□ 2.77
CPSF4-205ENST00000440514 WDR62O43379 1518 aa32.24■■■□□ 2.75
CPSF4-205ENST00000440514 URB2Q14146 1524 aaKnown RBP32.13■■■□□ 2.73
CPSF4-205ENST00000440514 TOPBP1Q92547 1522 aa31.93■■■□□ 2.7
CPSF4-205ENST00000440514 DNMBPQ6XZF7 1577 aa31.92■■■□□ 2.7
CPSF4-205ENST00000440514 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
CPSF4-205ENST00000440514 CUX1P39880 1505 aa31.75■■■□□ 2.67
CPSF4-205ENST00000440514 IFT140Q96RY7 1462 aa31.68■■■□□ 2.66
CPSF4-205ENST00000440514 POLA1P09884 1462 aaPredicted RBP31.67■■■□□ 2.66
CPSF4-205ENST00000440514 FGD5Q6ZNL6 1462 aa31.62■■■□□ 2.65
CPSF4-205ENST00000440514 TARBP1Q13395 1621 aaKnown RBP31.6■■■□□ 2.65
CPSF4-205ENST00000440514 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
CPSF4-205ENST00000440514 RAD54L2Q9Y4B4 1467 aa31.53■■■□□ 2.64
CPSF4-205ENST00000440514 SYNJ1O43426 1573 aa31.52■■■□□ 2.64
CPSF4-205ENST00000440514 WRNQ14191 1432 aaPredicted RBP eCLIP31.52■■■□□ 2.645e-6■■■■■ 29.2
CPSF4-205ENST00000440514 EIF4G3O43432 1585 aaKnown RBP31.51■■■□□ 2.64
CPSF4-205ENST00000440514 BIVM-ERCC5R4GMW8 1640 aa31.5■■■□□ 2.63
CPSF4-205ENST00000440514 SOGA1O94964 1423 aa31.49■■■□□ 2.63
CPSF4-205ENST00000440514 TOP2BQ02880 1626 aa31.48■■■□□ 2.63
CPSF4-205ENST00000440514 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
CPSF4-205ENST00000440514 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.612e-7■■■■■ 92.9
CPSF4-205ENST00000440514 TDRD9Q8NDG6 1382 aaKnown RBP31.32■■■□□ 2.6
CPSF4-205ENST00000440514 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
CPSF4-205ENST00000440514 DNAJC5Q9H3Z4 198 aa31.25■■■□□ 2.59
CPSF4-205ENST00000440514 ABCA5Q8WWZ7 1642 aa31.21■■■□□ 2.59
CPSF4-205ENST00000440514 PBRM1Q86U86 1689 aa31.18■■■□□ 2.58
CPSF4-205ENST00000440514 GAPVD1Q14C86 1478 aa31.14■■■□□ 2.58
CPSF4-205ENST00000440514 GRIN2BQ13224 1484 aa31.14■■■□□ 2.57
CPSF4-205ENST00000440514 SNAPC4Q5SXM2 1469 aa31.14■■■□□ 2.57
CPSF4-205ENST00000440514 CHD1O14646 1710 aa31.11■■■□□ 2.57
CPSF4-205ENST00000440514 MAGI1Q96QZ7 1491 aaPredicted RBP31.04■■■□□ 2.56
CPSF4-205ENST00000440514 OSCARQ8IYS5 282 aa30.98■■■□□ 2.55
CPSF4-205ENST00000440514 FBLN2P98095 1184 aa30.94■■■□□ 2.54
CPSF4-205ENST00000440514 SYNJ2O15056 1496 aa30.94■■■□□ 2.54
CPSF4-205ENST00000440514 ADAMTS12P58397 1594 aa30.92■■■□□ 2.54
CPSF4-205ENST00000440514 ERICH3Q5RHP9 1530 aa30.91■■■□□ 2.54
CPSF4-205ENST00000440514 CHMP7Q8WUX9 453 aaPredicted RBP30.84■■■□□ 2.53
CPSF4-205ENST00000440514 KIF27Q86VH2 1401 aa30.82■■■□□ 2.52
CPSF4-205ENST00000440514 FHAD1B1AJZ9 1412 aa30.78■■■□□ 2.52
CPSF4-205ENST00000440514 GRIN2AQ12879 1464 aa30.76■■■□□ 2.51
CPSF4-205ENST00000440514 TRIM41Q8WV44 630 aa30.75■■■□□ 2.51
CPSF4-205ENST00000440514 CLASP1Q7Z460 1538 aa30.73■■■□□ 2.51
CPSF4-205ENST00000440514 CUL7Q14999 1698 aa30.68■■■□□ 2.5
CPSF4-205ENST00000440514 IGF1RP08069 1367 aa30.67■■■□□ 2.5
CPSF4-205ENST00000440514 CEP170Q5SW79 1584 aa30.65■■■□□ 2.5
CPSF4-205ENST00000440514 RUSC2Q8N2Y8 1516 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3CA6NJZ7 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3BA6NNM3 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3Q9UFD9 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 ARHGEF11O15085 1522 aa30.62■■■□□ 2.49
CPSF4-205ENST00000440514 NUP160Q12769 1436 aa30.6■■■□□ 2.49
CPSF4-205ENST00000440514 CARMIL1Q5VZK9 1371 aa30.5■■■□□ 2.47
CPSF4-205ENST00000440514 CHIC1Q5VXU3 224 aa30.46■■■□□ 2.47
CPSF4-205ENST00000440514 SHROOM2Q13796 1616 aa30.41■■■□□ 2.46
CPSF4-205ENST00000440514 ARAP1Q96P48 1450 aa30.39■■■□□ 2.46
CPSF4-205ENST00000440514 RAPGEF2Q9Y4G8 1499 aa30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms