RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 NISCHQ9Y2I1 1504 aa43.85■■■■■ 4.61
CPSF4-205ENST00000440514 CCDC180Q9P1Z9 1646 aa39.01■■■■□ 3.84
CPSF4-205ENST00000440514 ABCC9O60706 1549 aa38.09■■■■□ 3.69
CPSF4-205ENST00000440514 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
CPSF4-205ENST00000440514 NACADO15069 1562 aa36.59■■■■□ 3.45
CPSF4-205ENST00000440514 ZCCHC6Q5VYS8 1495 aaKnown RBP36.58■■■■□ 3.45
CPSF4-205ENST00000440514 DCAF8L2P0C7V8 631 aa36.53■■■■□ 3.44
CPSF4-205ENST00000440514 MYO15BQ96JP2 1530 aa36.36■■■■□ 3.41
CPSF4-205ENST00000440514 DCAF1Q9Y4B6 1507 aa36.26■■■■□ 3.4
CPSF4-205ENST00000440514 UNC13AQ9UPW8 1703 aa35.9■■■■□ 3.34
CPSF4-205ENST00000440514 SCRIBQ14160 1630 aa35.64■■■■□ 3.3
CPSF4-205ENST00000440514 BICRAQ9NZM4 1560 aa35.58■■■■□ 3.29
CPSF4-205ENST00000440514 PABPN1Q86U42 306 aaKnown RBP eCLIP35.55■■■■□ 3.28
CPSF4-205ENST00000440514 SHROOM4Q9ULL8 1493 aa35.14■■■■□ 3.22
CPSF4-205ENST00000440514 DNAJC5BQ9UF47 199 aa34.83■■■■□ 3.17
CPSF4-205ENST00000440514 EIF4G1Q04637 1599 aaKnown RBP34.62■■■■□ 3.13
CPSF4-205ENST00000440514 CC2D2AQ9P2K1 1620 aa34.46■■■■□ 3.11
CPSF4-205ENST00000440514 CECR2Q9BXF3 1484 aa34.19■■■■□ 3.06
CPSF4-205ENST00000440514 SMARCA4P51532 1647 aa34.06■■■■□ 3.04
CPSF4-205ENST00000440514 BAZ1AQ9NRL2 1556 aaPredicted RBP33.99■■■■□ 3.03
CPSF4-205ENST00000440514 MROH2BQ7Z745 1585 aa33.84■■■■□ 3.01
CPSF4-205ENST00000440514 ATAD2BQ9ULI0 1458 aa33.8■■■■□ 3
CPSF4-205ENST00000440514 SMARCA2P51531 1590 aa33.77■■■■□ 3
CPSF4-205ENST00000440514 NCAPD3P42695 1498 aa33.74■■■□□ 2.99
CPSF4-205ENST00000440514 PEG3Q9GZU2 1588 aa33.68■■■□□ 2.98
CPSF4-205ENST00000440514 HMGXB3Q12766 1538 aa33.64■■■□□ 2.98
CPSF4-205ENST00000440514 BAZ1BQ9UIG0 1483 aaKnown RBP33.55■■■□□ 2.96
CPSF4-205ENST00000440514 WIZO95785 1651 aa33.5■■■□□ 2.95
CPSF4-205ENST00000440514 RSF1Q96T23 1441 aaPredicted RBP33.43■■■□□ 2.94
CPSF4-205ENST00000440514 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
CPSF4-205ENST00000440514 NESP48681 1621 aa33■■■□□ 2.87
CPSF4-205ENST00000440514 LAMC3Q9Y6N6 1575 aa32.88■■■□□ 2.85
CPSF4-205ENST00000440514 ERCC6Q03468 1493 aa32.8■■■□□ 2.84
CPSF4-205ENST00000440514 CADPSQ9ULU8 1353 aa32.75■■■□□ 2.83
CPSF4-205ENST00000440514 CCDC88BA6NC98 1476 aa32.69■■■□□ 2.82
CPSF4-205ENST00000440514 KIF21AQ7Z4S6 1674 aa32.66■■■□□ 2.82
CPSF4-205ENST00000440514 SUPT5HO00267 1087 aaKnown RBP32.61■■■□□ 2.81
CPSF4-205ENST00000440514 PDS5BQ9NTI5 1447 aa32.6■■■□□ 2.81
CPSF4-205ENST00000440514 CFTRP13569 1480 aa32.6■■■□□ 2.81
CPSF4-205ENST00000440514 THOC2Q8NI27 1593 aaKnown RBP32.52■■■□□ 2.8
CPSF4-205ENST00000440514 PRDM2Q13029 1718 aa32.46■■■□□ 2.79
CPSF4-205ENST00000440514 FANCD2Q9BXW9 1451 aa32.43■■■□□ 2.78
CPSF4-205ENST00000440514 CUX2O14529 1486 aa32.4■■■□□ 2.78
CPSF4-205ENST00000440514 CEP164Q9UPV0 1460 aa32.4■■■□□ 2.78
CPSF4-205ENST00000440514 MRC2Q9UBG0 1479 aa32.34■■■□□ 2.77
CPSF4-205ENST00000440514 WDR62O43379 1518 aa32.24■■■□□ 2.75
CPSF4-205ENST00000440514 URB2Q14146 1524 aaKnown RBP32.13■■■□□ 2.73
CPSF4-205ENST00000440514 TOPBP1Q92547 1522 aa31.93■■■□□ 2.7
CPSF4-205ENST00000440514 DNMBPQ6XZF7 1577 aa31.92■■■□□ 2.7
CPSF4-205ENST00000440514 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
CPSF4-205ENST00000440514 CUX1P39880 1505 aa31.75■■■□□ 2.67
CPSF4-205ENST00000440514 IFT140Q96RY7 1462 aa31.68■■■□□ 2.66
CPSF4-205ENST00000440514 POLA1P09884 1462 aaPredicted RBP31.67■■■□□ 2.66
CPSF4-205ENST00000440514 FGD5Q6ZNL6 1462 aa31.62■■■□□ 2.65
CPSF4-205ENST00000440514 TARBP1Q13395 1621 aaKnown RBP31.6■■■□□ 2.65
CPSF4-205ENST00000440514 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
CPSF4-205ENST00000440514 RAD54L2Q9Y4B4 1467 aa31.53■■■□□ 2.64
CPSF4-205ENST00000440514 SYNJ1O43426 1573 aa31.52■■■□□ 2.64
CPSF4-205ENST00000440514 WRNQ14191 1432 aaPredicted RBP eCLIP31.52■■■□□ 2.645e-6■■■■■ 29.2
CPSF4-205ENST00000440514 EIF4G3O43432 1585 aaKnown RBP31.51■■■□□ 2.64
CPSF4-205ENST00000440514 BIVM-ERCC5R4GMW8 1640 aa31.5■■■□□ 2.63
CPSF4-205ENST00000440514 SOGA1O94964 1423 aa31.49■■■□□ 2.63
CPSF4-205ENST00000440514 TOP2BQ02880 1626 aa31.48■■■□□ 2.63
CPSF4-205ENST00000440514 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
CPSF4-205ENST00000440514 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.612e-7■■■■■ 92.9
CPSF4-205ENST00000440514 TDRD9Q8NDG6 1382 aaKnown RBP31.32■■■□□ 2.6
CPSF4-205ENST00000440514 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
CPSF4-205ENST00000440514 DNAJC5Q9H3Z4 198 aa31.25■■■□□ 2.59
CPSF4-205ENST00000440514 ABCA5Q8WWZ7 1642 aa31.21■■■□□ 2.59
CPSF4-205ENST00000440514 PBRM1Q86U86 1689 aa31.18■■■□□ 2.58
CPSF4-205ENST00000440514 GAPVD1Q14C86 1478 aa31.14■■■□□ 2.58
CPSF4-205ENST00000440514 GRIN2BQ13224 1484 aa31.14■■■□□ 2.57
CPSF4-205ENST00000440514 SNAPC4Q5SXM2 1469 aa31.14■■■□□ 2.57
CPSF4-205ENST00000440514 CHD1O14646 1710 aa31.11■■■□□ 2.57
CPSF4-205ENST00000440514 MAGI1Q96QZ7 1491 aaPredicted RBP31.04■■■□□ 2.56
CPSF4-205ENST00000440514 OSCARQ8IYS5 282 aa30.98■■■□□ 2.55
CPSF4-205ENST00000440514 FBLN2P98095 1184 aa30.94■■■□□ 2.54
CPSF4-205ENST00000440514 SYNJ2O15056 1496 aa30.94■■■□□ 2.54
CPSF4-205ENST00000440514 ADAMTS12P58397 1594 aa30.92■■■□□ 2.54
CPSF4-205ENST00000440514 ERICH3Q5RHP9 1530 aa30.91■■■□□ 2.54
CPSF4-205ENST00000440514 CHMP7Q8WUX9 453 aaPredicted RBP30.84■■■□□ 2.53
CPSF4-205ENST00000440514 KIF27Q86VH2 1401 aa30.82■■■□□ 2.52
CPSF4-205ENST00000440514 FHAD1B1AJZ9 1412 aa30.78■■■□□ 2.52
CPSF4-205ENST00000440514 GRIN2AQ12879 1464 aa30.76■■■□□ 2.51
CPSF4-205ENST00000440514 TRIM41Q8WV44 630 aa30.75■■■□□ 2.51
CPSF4-205ENST00000440514 CLASP1Q7Z460 1538 aa30.73■■■□□ 2.51
CPSF4-205ENST00000440514 CUL7Q14999 1698 aa30.68■■■□□ 2.5
CPSF4-205ENST00000440514 IGF1RP08069 1367 aa30.67■■■□□ 2.5
CPSF4-205ENST00000440514 CEP170Q5SW79 1584 aa30.65■■■□□ 2.5
CPSF4-205ENST00000440514 RUSC2Q8N2Y8 1516 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3CA6NJZ7 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3BA6NNM3 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 RIMBP3Q9UFD9 1639 aa30.64■■■□□ 2.5
CPSF4-205ENST00000440514 ARHGEF11O15085 1522 aa30.62■■■□□ 2.49
CPSF4-205ENST00000440514 NUP160Q12769 1436 aa30.6■■■□□ 2.49
CPSF4-205ENST00000440514 CARMIL1Q5VZK9 1371 aa30.5■■■□□ 2.47
CPSF4-205ENST00000440514 CHIC1Q5VXU3 224 aa30.46■■■□□ 2.47
CPSF4-205ENST00000440514 SHROOM2Q13796 1616 aa30.41■■■□□ 2.46
CPSF4-205ENST00000440514 ARAP1Q96P48 1450 aa30.39■■■□□ 2.46
CPSF4-205ENST00000440514 RAPGEF2Q9Y4G8 1499 aa30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms