RNA–Protein interactions for RNA: ENST00000440346.1

PTPA-221, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 4

Gene PTPA, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-221ENST00000440346 NISCHQ9Y2I1 1504 aa17.56■□□□□ 0.4
PTPA-221ENST00000440346 AEBP2Q6ZN18 517 aaPredicted RBP16.98■□□□□ 0.31
PTPA-221ENST00000440346 CHIC1Q5VXU3 224 aa16■□□□□ 0.15
PTPA-221ENST00000440346 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
PTPA-221ENST00000440346 ABCC9O60706 1549 aa15.84■□□□□ 0.13
PTPA-221ENST00000440346 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
PTPA-221ENST00000440346 NACADO15069 1562 aa14.95□□□□□ -0.02
PTPA-221ENST00000440346 DNAJC5BQ9UF47 199 aa14.94□□□□□ -0.02
PTPA-221ENST00000440346 UNC13AQ9UPW8 1703 aa14.83□□□□□ -0.03
PTPA-221ENST00000440346 MYO15BQ96JP2 1530 aa14.73□□□□□ -0.05
PTPA-221ENST00000440346 DCAF8L2P0C7V8 631 aa14.73□□□□□ -0.05
PTPA-221ENST00000440346 PABPN1Q86U42 306 aaKnown RBP eCLIP14.7□□□□□ -0.06
PTPA-221ENST00000440346 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
PTPA-221ENST00000440346 ZCCHC6Q5VYS8 1495 aaKnown RBP14.55□□□□□ -0.08
PTPA-221ENST00000440346 SENP3Q9H4L4 574 aaPredicted RBP14.54□□□□□ -0.08
PTPA-221ENST00000440346 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
PTPA-221ENST00000440346 SHROOM4Q9ULL8 1493 aa14.44□□□□□ -0.1
PTPA-221ENST00000440346 SCRIBQ14160 1630 aa14.38□□□□□ -0.11
PTPA-221ENST00000440346 PHF23Q9BUL5 403 aaPredicted RBP14.35□□□□□ -0.11
PTPA-221ENST00000440346 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
PTPA-221ENST00000440346 EIF4G1Q04637 1599 aaKnown RBP14.3□□□□□ -0.12
PTPA-221ENST00000440346 CECR2Q9BXF3 1484 aa14.28□□□□□ -0.12
PTPA-221ENST00000440346 NCAPD3P42695 1498 aa13.8□□□□□ -0.2
PTPA-221ENST00000440346 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
PTPA-221ENST00000440346 SMARCA4P51532 1647 aa13.74□□□□□ -0.21
PTPA-221ENST00000440346 ATAD2BQ9ULI0 1458 aa13.74□□□□□ -0.21
PTPA-221ENST00000440346 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
PTPA-221ENST00000440346 SMARCA2P51531 1590 aa13.7□□□□□ -0.22
PTPA-221ENST00000440346 CUX2O14529 1486 aa13.69□□□□□ -0.22
PTPA-221ENST00000440346 ERCC6Q03468 1493 aa13.66□□□□□ -0.22
PTPA-221ENST00000440346 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
PTPA-221ENST00000440346 PEG3Q9GZU2 1588 aa13.62□□□□□ -0.23
PTPA-221ENST00000440346 NESP48681 1621 aa13.61□□□□□ -0.23
PTPA-221ENST00000440346 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
PTPA-221ENST00000440346 FOXD1Q16676 465 aa13.56□□□□□ -0.24
PTPA-221ENST00000440346 MROH2BQ7Z745 1585 aa13.53□□□□□ -0.24
PTPA-221ENST00000440346 THOC2Q8NI27 1593 aaKnown RBP13.53□□□□□ -0.24
PTPA-221ENST00000440346 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
PTPA-221ENST00000440346 KIF21AQ7Z4S6 1674 aa13.49□□□□□ -0.25
PTPA-221ENST00000440346 WIZO95785 1651 aa13.38□□□□□ -0.27
PTPA-221ENST00000440346 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
PTPA-221ENST00000440346 CADPSQ9ULU8 1353 aa13.34□□□□□ -0.27
PTPA-221ENST00000440346 MRC2Q9UBG0 1479 aa13.3□□□□□ -0.28
PTPA-221ENST00000440346 WDR62O43379 1518 aa13.3□□□□□ -0.28
PTPA-221ENST00000440346 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
PTPA-221ENST00000440346 RSF1Q96T23 1441 aaPredicted RBP13.21□□□□□ -0.3
PTPA-221ENST00000440346 CFTRP13569 1480 aa13.2□□□□□ -0.3
PTPA-221ENST00000440346 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
PTPA-221ENST00000440346 TOP2AP11388 1531 aaKnown RBP13.19□□□□□ -0.3
PTPA-221ENST00000440346 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
PTPA-221ENST00000440346 URB2Q14146 1524 aaKnown RBP13.13□□□□□ -0.31
PTPA-221ENST00000440346 TRIM41Q8WV44 630 aa13.07□□□□□ -0.32
PTPA-221ENST00000440346 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
PTPA-221ENST00000440346 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
PTPA-221ENST00000440346 ZNF608Q9ULD9 1512 aaPredicted RBP12.97□□□□□ -0.33
PTPA-221ENST00000440346 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
PTPA-221ENST00000440346 TOPBP1Q92547 1522 aa12.96□□□□□ -0.33
PTPA-221ENST00000440346 RIMBP3CA6NJZ7 1639 aa12.93□□□□□ -0.34
PTPA-221ENST00000440346 RIMBP3BA6NNM3 1639 aa12.93□□□□□ -0.34
PTPA-221ENST00000440346 RIMBP3Q9UFD9 1639 aa12.93□□□□□ -0.34
PTPA-221ENST00000440346 EIF4G3O43432 1585 aaKnown RBP12.92□□□□□ -0.34
PTPA-221ENST00000440346 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
PTPA-221ENST00000440346 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
PTPA-221ENST00000440346 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
PTPA-221ENST00000440346 CHD1O14646 1710 aa12.87□□□□□ -0.35
PTPA-221ENST00000440346 ARHGEF11O15085 1522 aa12.86□□□□□ -0.35
PTPA-221ENST00000440346 AQRO60306 1485 aaKnown RBP eCLIP12.82□□□□□ -0.36
PTPA-221ENST00000440346 POLA1P09884 1462 aaPredicted RBP12.82□□□□□ -0.36
PTPA-221ENST00000440346 RAD54L2Q9Y4B4 1467 aa12.77□□□□□ -0.37
PTPA-221ENST00000440346 MSH5O43196 834 aa12.76□□□□□ -0.37
PTPA-221ENST00000440346 PLPPR3Q6T4P5 718 aa12.75□□□□□ -0.37
PTPA-221ENST00000440346 WDR97A6NE52 1622 aa12.74□□□□□ -0.37
PTPA-221ENST00000440346 ARAP1Q96P48 1450 aa12.73□□□□□ -0.37
PTPA-221ENST00000440346 FGD5Q6ZNL6 1462 aa12.72□□□□□ -0.37
PTPA-221ENST00000440346 SOGA1O94964 1423 aa12.72□□□□□ -0.37
PTPA-221ENST00000440346 CUX1P39880 1505 aa12.72□□□□□ -0.37
PTPA-221ENST00000440346 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
PTPA-221ENST00000440346 CYB5RLQ6IPT4 315 aa12.7□□□□□ -0.38
PTPA-221ENST00000440346 CLASP1Q7Z460 1538 aa12.69□□□□□ -0.38
PTPA-221ENST00000440346 POTEDQ86YR6 584 aa12.69□□□□□ -0.38
PTPA-221ENST00000440346 SNAPC4Q5SXM2 1469 aa12.69□□□□□ -0.38
PTPA-221ENST00000440346 SUPT5HO00267 1087 aaKnown RBP12.68□□□□□ -0.38
PTPA-221ENST00000440346 FBLN2P98095 1184 aa12.68□□□□□ -0.38
PTPA-221ENST00000440346 PIAS4Q8N2W9 510 aaPredicted RBP12.68□□□□□ -0.38
PTPA-221ENST00000440346 MAGI1Q96QZ7 1491 aaPredicted RBP12.66□□□□□ -0.38
PTPA-221ENST00000440346 PBRM1Q86U86 1689 aa12.66□□□□□ -0.38
PTPA-221ENST00000440346 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
PTPA-221ENST00000440346 GRIN2BQ13224 1484 aa12.64□□□□□ -0.39
PTPA-221ENST00000440346 SYNJ2O15056 1496 aa12.62□□□□□ -0.39
PTPA-221ENST00000440346 ABCA5Q8WWZ7 1642 aa12.61□□□□□ -0.39
PTPA-221ENST00000440346 CHMP7Q8WUX9 453 aaPredicted RBP12.6□□□□□ -0.39
PTPA-221ENST00000440346 GAPVD1Q14C86 1478 aa12.59□□□□□ -0.39
PTPA-221ENST00000440346 ABCA10Q8WWZ4 1543 aa12.58□□□□□ -0.4
PTPA-221ENST00000440346 PPP6R1Q9UPN7 881 aa12.58□□□□□ -0.4
PTPA-221ENST00000440346 ADRA2BP18089 450 aa12.56□□□□□ -0.4
PTPA-221ENST00000440346 TRHP20396 242 aaPredicted RBP12.56□□□□□ -0.4
PTPA-221ENST00000440346 BIVM-ERCC5R4GMW8 1640 aa12.53□□□□□ -0.4
PTPA-221ENST00000440346 ADAMTS12P58397 1594 aa12.51□□□□□ -0.41
PTPA-221ENST00000440346 TOP2BQ02880 1626 aa12.51□□□□□ -0.41
PTPA-221ENST00000440346 GRIN2AQ12879 1464 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 252.1 ms