RNA–Protein interactions for RNA: ENST00000439955.1

AC009404.1-202, humanhuman

TSL 3 BASIC

Gene AC009404.1, Length 968 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC009404.1-202ENST00000439955 NISCHQ9Y2I1 1504 aa27.72■■■□□ 2.03
AC009404.1-202ENST00000439955 ABCC9O60706 1549 aa25.78■■□□□ 1.72
AC009404.1-202ENST00000439955 CCDC180Q9P1Z9 1646 aa25.01■■□□□ 1.59
AC009404.1-202ENST00000439955 DNAJC5BQ9UF47 199 aa24.72■■□□□ 1.55
AC009404.1-202ENST00000439955 RB1CC1Q8TDY2 1594 aa24.15■■□□□ 1.46
AC009404.1-202ENST00000439955 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
AC009404.1-202ENST00000439955 DCAF8L2P0C7V8 631 aa23.83■■□□□ 1.41
AC009404.1-202ENST00000439955 NACADO15069 1562 aa23.82■■□□□ 1.4
AC009404.1-202ENST00000439955 UNC13AQ9UPW8 1703 aa23.56■■□□□ 1.36
AC009404.1-202ENST00000439955 BICRAQ9NZM4 1560 aa23.5■■□□□ 1.35
AC009404.1-202ENST00000439955 AEBP2Q6ZN18 517 aaPredicted RBP23.44■■□□□ 1.34
AC009404.1-202ENST00000439955 MYO15BQ96JP2 1530 aa23.25■■□□□ 1.31
AC009404.1-202ENST00000439955 CECR2Q9BXF3 1484 aa23.24■■□□□ 1.31
AC009404.1-202ENST00000439955 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
AC009404.1-202ENST00000439955 DNAJC5Q9H3Z4 198 aa23.03■■□□□ 1.28
AC009404.1-202ENST00000439955 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
AC009404.1-202ENST00000439955 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
AC009404.1-202ENST00000439955 SCRIBQ14160 1630 aa22.92■■□□□ 1.26
AC009404.1-202ENST00000439955 ZCCHC6Q5VYS8 1495 aaKnown RBP22.84■■□□□ 1.25
AC009404.1-202ENST00000439955 DCAF1Q9Y4B6 1507 aa22.77■■□□□ 1.24
AC009404.1-202ENST00000439955 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
AC009404.1-202ENST00000439955 CUX2O14529 1486 aa22.32■■□□□ 1.16
AC009404.1-202ENST00000439955 ERCC6Q03468 1493 aa22.26■■□□□ 1.15
AC009404.1-202ENST00000439955 NCAPD3P42695 1498 aa22.03■■□□□ 1.12
AC009404.1-202ENST00000439955 NESP48681 1621 aa21.98■■□□□ 1.11
AC009404.1-202ENST00000439955 ATAD2BQ9ULI0 1458 aa21.93■■□□□ 1.1
AC009404.1-202ENST00000439955 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
AC009404.1-202ENST00000439955 HMGXB3Q12766 1538 aa21.78■■□□□ 1.08
AC009404.1-202ENST00000439955 SMARCA2P51531 1590 aa21.77■■□□□ 1.08
AC009404.1-202ENST00000439955 THOC2Q8NI27 1593 aaKnown RBP21.77■■□□□ 1.08
AC009404.1-202ENST00000439955 SMARCA4P51532 1647 aa21.73■■□□□ 1.07
AC009404.1-202ENST00000439955 BAZ1BQ9UIG0 1483 aaKnown RBP21.69■■□□□ 1.06
AC009404.1-202ENST00000439955 LAMC3Q9Y6N6 1575 aa21.6■■□□□ 1.05
AC009404.1-202ENST00000439955 KIF21AQ7Z4S6 1674 aa21.58■■□□□ 1.05
AC009404.1-202ENST00000439955 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
AC009404.1-202ENST00000439955 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
AC009404.1-202ENST00000439955 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
AC009404.1-202ENST00000439955 MROH2BQ7Z745 1585 aa21.4■■□□□ 1.02
AC009404.1-202ENST00000439955 MRC2Q9UBG0 1479 aa21.4■■□□□ 1.02
AC009404.1-202ENST00000439955 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
AC009404.1-202ENST00000439955 WDR62O43379 1518 aa21.34■■□□□ 1.01
AC009404.1-202ENST00000439955 OSCARQ8IYS5 282 aa21.29■■□□□ 1
AC009404.1-202ENST00000439955 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
AC009404.1-202ENST00000439955 FANCD2Q9BXW9 1451 aa21.15■□□□□ 0.98
AC009404.1-202ENST00000439955 WIZO95785 1651 aa21.11■□□□□ 0.97
AC009404.1-202ENST00000439955 RIMBP3CA6NJZ7 1639 aa21.04■□□□□ 0.96
AC009404.1-202ENST00000439955 RIMBP3BA6NNM3 1639 aa21.04■□□□□ 0.96
AC009404.1-202ENST00000439955 RIMBP3Q9UFD9 1639 aa21.04■□□□□ 0.96
AC009404.1-202ENST00000439955 URB2Q14146 1524 aaKnown RBP21.03■□□□□ 0.96
AC009404.1-202ENST00000439955 CFTRP13569 1480 aa20.99■□□□□ 0.95
AC009404.1-202ENST00000439955 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
AC009404.1-202ENST00000439955 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.94
AC009404.1-202ENST00000439955 CYB5RLQ6IPT4 315 aa20.89■□□□□ 0.93
AC009404.1-202ENST00000439955 RSF1Q96T23 1441 aaPredicted RBP20.88■□□□□ 0.93
AC009404.1-202ENST00000439955 TRHP20396 242 aaPredicted RBP20.87■□□□□ 0.93
AC009404.1-202ENST00000439955 IFT140Q96RY7 1462 aa20.79■□□□□ 0.92
AC009404.1-202ENST00000439955 SUPT5HO00267 1087 aaKnown RBP20.78■□□□□ 0.92
AC009404.1-202ENST00000439955 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
AC009404.1-202ENST00000439955 ARAP1Q96P48 1450 aa20.7■□□□□ 0.9
AC009404.1-202ENST00000439955 EIF4G3O43432 1585 aaKnown RBP20.68■□□□□ 0.9
AC009404.1-202ENST00000439955 FBLN2P98095 1184 aa20.68■□□□□ 0.9
AC009404.1-202ENST00000439955 TOPBP1Q92547 1522 aa20.68■□□□□ 0.9
AC009404.1-202ENST00000439955 AQRO60306 1485 aaKnown RBP eCLIP20.63■□□□□ 0.89
AC009404.1-202ENST00000439955 CHD1O14646 1710 aa20.61■□□□□ 0.89
AC009404.1-202ENST00000439955 PRDM2Q13029 1718 aa20.6■□□□□ 0.89
AC009404.1-202ENST00000439955 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
AC009404.1-202ENST00000439955 DNMBPQ6XZF7 1577 aa20.51■□□□□ 0.87
AC009404.1-202ENST00000439955 ABCC8Q09428 1581 aa20.51■□□□□ 0.87
AC009404.1-202ENST00000439955 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
AC009404.1-202ENST00000439955 TDRD9Q8NDG6 1382 aaKnown RBP20.45■□□□□ 0.86
AC009404.1-202ENST00000439955 POLA1P09884 1462 aaPredicted RBP20.43■□□□□ 0.86
AC009404.1-202ENST00000439955 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
AC009404.1-202ENST00000439955 SNAPC4Q5SXM2 1469 aa20.38■□□□□ 0.85
AC009404.1-202ENST00000439955 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
AC009404.1-202ENST00000439955 CHMP7Q8WUX9 453 aaPredicted RBP20.36■□□□□ 0.85
AC009404.1-202ENST00000439955 SOGA1O94964 1423 aa20.36■□□□□ 0.85
AC009404.1-202ENST00000439955 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
AC009404.1-202ENST00000439955 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
AC009404.1-202ENST00000439955 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
AC009404.1-202ENST00000439955 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
AC009404.1-202ENST00000439955 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
AC009404.1-202ENST00000439955 SYNJ2O15056 1496 aa20.2■□□□□ 0.82
AC009404.1-202ENST00000439955 WDR97A6NE52 1622 aa20.15■□□□□ 0.82
AC009404.1-202ENST00000439955 CUX1P39880 1505 aa20.13■□□□□ 0.81
AC009404.1-202ENST00000439955 ERCC6L2Q5T890 1561 aa20.1■□□□□ 0.81
AC009404.1-202ENST00000439955 PHF23Q9BUL5 403 aaPredicted RBP20.1■□□□□ 0.81
AC009404.1-202ENST00000439955 PBRM1Q86U86 1689 aa20.04■□□□□ 0.8
AC009404.1-202ENST00000439955 GRIN2AQ12879 1464 aa19.95■□□□□ 0.78
AC009404.1-202ENST00000439955 CEP170Q5SW79 1584 aa19.95■□□□□ 0.78
AC009404.1-202ENST00000439955 ABCA5Q8WWZ7 1642 aa19.94■□□□□ 0.78
AC009404.1-202ENST00000439955 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
AC009404.1-202ENST00000439955 NUP160Q12769 1436 aa19.88■□□□□ 0.77
AC009404.1-202ENST00000439955 KIF13AQ9H1H9 1805 aa19.86■□□□□ 0.77
AC009404.1-202ENST00000439955 ADAMTS12P58397 1594 aa19.85■□□□□ 0.77
AC009404.1-202ENST00000439955 FAM69CQ0P6D2 419 aa19.84■□□□□ 0.77
AC009404.1-202ENST00000439955 SHROOM2Q13796 1616 aa19.83■□□□□ 0.76
AC009404.1-202ENST00000439955 ILDR1Q86SU0 546 aaPredicted RBP19.82■□□□□ 0.76
AC009404.1-202ENST00000439955 PRG4Q92954 1404 aaPredicted RBP19.81■□□□□ 0.76
AC009404.1-202ENST00000439955 KDM4FA0A1W2PPD8 638 aa19.8■□□□□ 0.76
AC009404.1-202ENST00000439955 FHAD1B1AJZ9 1412 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms