RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
SCLT1-202ENST00000439369 CCDC180Q9P1Z9 1646 aa26.42■■□□□ 1.82
SCLT1-202ENST00000439369 ABCC9O60706 1549 aa25.22■■□□□ 1.63
SCLT1-202ENST00000439369 ZCCHC6Q5VYS8 1495 aaKnown RBP25.03■■□□□ 1.6
SCLT1-202ENST00000439369 DCAF1Q9Y4B6 1507 aa24.86■■□□□ 1.57
SCLT1-202ENST00000439369 MYO15BQ96JP2 1530 aa24.8■■□□□ 1.56
SCLT1-202ENST00000439369 NACADO15069 1562 aa24.71■■□□□ 1.55
SCLT1-202ENST00000439369 DCAF8L2P0C7V8 631 aa24.62■■□□□ 1.53
SCLT1-202ENST00000439369 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
SCLT1-202ENST00000439369 SCRIBQ14160 1630 aa24.02■■□□□ 1.44
SCLT1-202ENST00000439369 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
SCLT1-202ENST00000439369 BICRAQ9NZM4 1560 aa23.78■■□□□ 1.4
SCLT1-202ENST00000439369 SHROOM4Q9ULL8 1493 aa23.78■■□□□ 1.4
SCLT1-202ENST00000439369 PABPN1Q86U42 306 aaKnown RBP eCLIP23.61■■□□□ 1.37
SCLT1-202ENST00000439369 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
SCLT1-202ENST00000439369 CECR2Q9BXF3 1484 aa23.17■■□□□ 1.3
SCLT1-202ENST00000439369 EIF4G1Q04637 1599 aaKnown RBP23.12■■□□□ 1.29
SCLT1-202ENST00000439369 SMARCA4P51532 1647 aa23.09■■□□□ 1.29
SCLT1-202ENST00000439369 MROH2BQ7Z745 1585 aa23.01■■□□□ 1.27
SCLT1-202ENST00000439369 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
SCLT1-202ENST00000439369 PEG3Q9GZU2 1588 aa22.92■■□□□ 1.26
SCLT1-202ENST00000439369 SMARCA2P51531 1590 aa22.88■■□□□ 1.25
SCLT1-202ENST00000439369 CC2D2AQ9P2K1 1620 aa22.87■■□□□ 1.25
SCLT1-202ENST00000439369 ATAD2BQ9ULI0 1458 aa22.84■■□□□ 1.25
SCLT1-202ENST00000439369 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
SCLT1-202ENST00000439369 WIZO95785 1651 aa22.77■■□□□ 1.24
SCLT1-202ENST00000439369 HMGXB3Q12766 1538 aa22.73■■□□□ 1.23
SCLT1-202ENST00000439369 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
SCLT1-202ENST00000439369 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
SCLT1-202ENST00000439369 TOP2AP11388 1531 aaKnown RBP22.64■■□□□ 1.21
SCLT1-202ENST00000439369 DNAJC5BQ9UF47 199 aa22.63■■□□□ 1.21
SCLT1-202ENST00000439369 CCDC88BA6NC98 1476 aa22.32■■□□□ 1.16
SCLT1-202ENST00000439369 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
SCLT1-202ENST00000439369 CFTRP13569 1480 aa22.11■■□□□ 1.13
SCLT1-202ENST00000439369 LAMC3Q9Y6N6 1575 aa22.1■■□□□ 1.13
SCLT1-202ENST00000439369 PRDM2Q13029 1718 aa21.98■■□□□ 1.11
SCLT1-202ENST00000439369 NESP48681 1621 aa21.96■■□□□ 1.11
SCLT1-202ENST00000439369 PDS5BQ9NTI5 1447 aa21.93■■□□□ 1.1
SCLT1-202ENST00000439369 FANCD2Q9BXW9 1451 aa21.85■■□□□ 1.09
SCLT1-202ENST00000439369 CEP164Q9UPV0 1460 aa21.79■■□□□ 1.08
SCLT1-202ENST00000439369 KIF21AQ7Z4S6 1674 aa21.75■■□□□ 1.07
SCLT1-202ENST00000439369 ERCC6Q03468 1493 aa21.74■■□□□ 1.07
SCLT1-202ENST00000439369 ABCC8Q09428 1581 aa21.67■■□□□ 1.06
SCLT1-202ENST00000439369 MRC2Q9UBG0 1479 aa21.66■■□□□ 1.06
SCLT1-202ENST00000439369 WRNQ14191 1432 aaPredicted RBP eCLIP21.64■■□□□ 1.06
SCLT1-202ENST00000439369 DNMBPQ6XZF7 1577 aa21.61■■□□□ 1.05
SCLT1-202ENST00000439369 THOC2Q8NI27 1593 aaKnown RBP21.59■■□□□ 1.05
SCLT1-202ENST00000439369 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
SCLT1-202ENST00000439369 WDR62O43379 1518 aa21.58■■□□□ 1.04
SCLT1-202ENST00000439369 CUX1P39880 1505 aa21.57■■□□□ 1.04
SCLT1-202ENST00000439369 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
SCLT1-202ENST00000439369 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
SCLT1-202ENST00000439369 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
SCLT1-202ENST00000439369 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
SCLT1-202ENST00000439369 CHIC1Q5VXU3 224 aa21.5■■□□□ 1.03
SCLT1-202ENST00000439369 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
SCLT1-202ENST00000439369 FGD5Q6ZNL6 1462 aa21.42■■□□□ 1.02
SCLT1-202ENST00000439369 CUX2O14529 1486 aa21.4■■□□□ 1.02
SCLT1-202ENST00000439369 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
SCLT1-202ENST00000439369 IFT140Q96RY7 1462 aa21.33■■□□□ 1.01
SCLT1-202ENST00000439369 SOGA1O94964 1423 aa21.32■■□□□ 1
SCLT1-202ENST00000439369 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
SCLT1-202ENST00000439369 ABCA10Q8WWZ4 1543 aa21.28■■□□□ 1
SCLT1-202ENST00000439369 WDR97A6NE52 1622 aa21.26■□□□□ 0.99
SCLT1-202ENST00000439369 RAD54L2Q9Y4B4 1467 aa21.25■□□□□ 0.99
SCLT1-202ENST00000439369 EEA1Q15075 1411 aa21.17■□□□□ 0.98
SCLT1-202ENST00000439369 KIF27Q86VH2 1401 aa21.17■□□□□ 0.98
SCLT1-202ENST00000439369 ABCA5Q8WWZ7 1642 aa21.14■□□□□ 0.97
SCLT1-202ENST00000439369 ZNF608Q9ULD9 1512 aaPredicted RBP21.1■□□□□ 0.97
SCLT1-202ENST00000439369 GAPVD1Q14C86 1478 aa21.1■□□□□ 0.97
SCLT1-202ENST00000439369 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
SCLT1-202ENST00000439369 EIF4G3O43432 1585 aaKnown RBP21.09■□□□□ 0.97
SCLT1-202ENST00000439369 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
SCLT1-202ENST00000439369 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.96
SCLT1-202ENST00000439369 GRIN2BQ13224 1484 aa21.05■□□□□ 0.96
SCLT1-202ENST00000439369 RUSC2Q8N2Y8 1516 aa21.03■□□□□ 0.96
SCLT1-202ENST00000439369 PBRM1Q86U86 1689 aa21■□□□□ 0.95
SCLT1-202ENST00000439369 IGF1RP08069 1367 aa20.99■□□□□ 0.95
SCLT1-202ENST00000439369 CSRNP3Q8WYN3 585 aa20.97■□□□□ 0.95
SCLT1-202ENST00000439369 MAGI1Q96QZ7 1491 aaPredicted RBP20.96■□□□□ 0.95
SCLT1-202ENST00000439369 CUL7Q14999 1698 aa20.96■□□□□ 0.95
SCLT1-202ENST00000439369 SNAPC4Q5SXM2 1469 aa20.9■□□□□ 0.94
SCLT1-202ENST00000439369 FHAD1B1AJZ9 1412 aa20.9■□□□□ 0.94
SCLT1-202ENST00000439369 ADAMTS12P58397 1594 aa20.89■□□□□ 0.94
SCLT1-202ENST00000439369 PRXQ9BXM0 1461 aa20.89■□□□□ 0.94
SCLT1-202ENST00000439369 CARMIL1Q5VZK9 1371 aa20.88■□□□□ 0.93
SCLT1-202ENST00000439369 FAM9AQ8IZU1 332 aaPredicted RBP20.88■□□□□ 0.93
SCLT1-202ENST00000439369 KIF21BO75037 1637 aa20.86■□□□□ 0.93
SCLT1-202ENST00000439369 SYNJ2O15056 1496 aa20.85■□□□□ 0.93
SCLT1-202ENST00000439369 RAPGEF2Q9Y4G8 1499 aa20.83■□□□□ 0.93
SCLT1-202ENST00000439369 GOLGA3Q08378 1498 aa20.76■□□□□ 0.91
SCLT1-202ENST00000439369 GRIN2AQ12879 1464 aa20.76■□□□□ 0.91
SCLT1-202ENST00000439369 CHMP7Q8WUX9 453 aaPredicted RBP20.74■□□□□ 0.91
SCLT1-202ENST00000439369 CHD1O14646 1710 aa20.7■□□□□ 0.9
SCLT1-202ENST00000439369 NUP160Q12769 1436 aa20.67■□□□□ 0.9
SCLT1-202ENST00000439369 FBLN2P98095 1184 aa20.66■□□□□ 0.9
SCLT1-202ENST00000439369 CEP170Q5SW79 1584 aa20.61■□□□□ 0.89
SCLT1-202ENST00000439369 TNIKQ9UKE5 1360 aa20.6■□□□□ 0.89
SCLT1-202ENST00000439369 KIAA0586Q9BVV6 1533 aa20.6■□□□□ 0.89
SCLT1-202ENST00000439369 CTTNBP2Q8WZ74 1663 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms