RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 NISCHQ9Y2I1 1504 aa25.17■■□□□ 1.62
SMPD4-208ENST00000439029 ABCC9O60706 1549 aa23.63■■□□□ 1.37
SMPD4-208ENST00000439029 DNAJC5BQ9UF47 199 aa22.8■■□□□ 1.24
SMPD4-208ENST00000439029 CCDC180Q9P1Z9 1646 aa22.77■■□□□ 1.24
SMPD4-208ENST00000439029 RB1CC1Q8TDY2 1594 aa22.04■■□□□ 1.12
SMPD4-208ENST00000439029 PABPN1Q86U42 306 aaKnown RBP eCLIP21.97■■□□□ 1.11
SMPD4-208ENST00000439029 DCAF8L2P0C7V8 631 aa21.77■■□□□ 1.08
SMPD4-208ENST00000439029 NACADO15069 1562 aa21.72■■□□□ 1.07
SMPD4-208ENST00000439029 UNC13AQ9UPW8 1703 aa21.58■■□□□ 1.05
SMPD4-208ENST00000439029 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
SMPD4-208ENST00000439029 DNAJC5Q9H3Z4 198 aa21.31■■□□□ 1
SMPD4-208ENST00000439029 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
SMPD4-208ENST00000439029 CC2D2AQ9P2K1 1620 aa21.22■□□□□ 0.99
SMPD4-208ENST00000439029 MYO15BQ96JP2 1530 aa21.12■□□□□ 0.97
SMPD4-208ENST00000439029 EIF4G1Q04637 1599 aaKnown RBP21■□□□□ 0.95
SMPD4-208ENST00000439029 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
SMPD4-208ENST00000439029 SCRIBQ14160 1630 aa20.88■□□□□ 0.93
SMPD4-208ENST00000439029 ZCCHC6Q5VYS8 1495 aaKnown RBP20.7■□□□□ 0.9
SMPD4-208ENST00000439029 DCAF1Q9Y4B6 1507 aa20.64■□□□□ 0.9
SMPD4-208ENST00000439029 CUX2O14529 1486 aa20.48■□□□□ 0.87
SMPD4-208ENST00000439029 ERCC6Q03468 1493 aa20.4■□□□□ 0.86
SMPD4-208ENST00000439029 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
SMPD4-208ENST00000439029 NESP48681 1621 aa20.11■□□□□ 0.81
SMPD4-208ENST00000439029 NCAPD3P42695 1498 aa20.09■□□□□ 0.81
SMPD4-208ENST00000439029 ATAD2BQ9ULI0 1458 aa19.98■□□□□ 0.79
SMPD4-208ENST00000439029 THOC2Q8NI27 1593 aaKnown RBP19.92■□□□□ 0.78
SMPD4-208ENST00000439029 SMARCA2P51531 1590 aa19.87■□□□□ 0.77
SMPD4-208ENST00000439029 HMGXB3Q12766 1538 aa19.84■□□□□ 0.77
SMPD4-208ENST00000439029 SMARCA4P51532 1647 aa19.77■□□□□ 0.76
SMPD4-208ENST00000439029 BAZ1BQ9UIG0 1483 aaKnown RBP19.76■□□□□ 0.75
SMPD4-208ENST00000439029 KIF21AQ7Z4S6 1674 aa19.75■□□□□ 0.75
SMPD4-208ENST00000439029 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
SMPD4-208ENST00000439029 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
SMPD4-208ENST00000439029 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
SMPD4-208ENST00000439029 BAZ1AQ9NRL2 1556 aaPredicted RBP19.55■□□□□ 0.72
SMPD4-208ENST00000439029 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
SMPD4-208ENST00000439029 PEG3Q9GZU2 1588 aa19.5■□□□□ 0.71
SMPD4-208ENST00000439029 WDR62O43379 1518 aa19.5■□□□□ 0.71
SMPD4-208ENST00000439029 CADPSQ9ULU8 1353 aa19.49■□□□□ 0.71
SMPD4-208ENST00000439029 MROH2BQ7Z745 1585 aa19.45■□□□□ 0.7
SMPD4-208ENST00000439029 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
SMPD4-208ENST00000439029 RIMBP3CA6NJZ7 1639 aa19.33■□□□□ 0.68
SMPD4-208ENST00000439029 RIMBP3BA6NNM3 1639 aa19.33■□□□□ 0.68
SMPD4-208ENST00000439029 RIMBP3Q9UFD9 1639 aa19.33■□□□□ 0.68
SMPD4-208ENST00000439029 FANCD2Q9BXW9 1451 aa19.28■□□□□ 0.68
SMPD4-208ENST00000439029 TRHP20396 242 aaPredicted RBP19.22■□□□□ 0.67
SMPD4-208ENST00000439029 CYB5RLQ6IPT4 315 aa19.21■□□□□ 0.67
SMPD4-208ENST00000439029 ARHGEF11O15085 1522 aa19.2■□□□□ 0.66
SMPD4-208ENST00000439029 WIZO95785 1651 aa19.19■□□□□ 0.66
SMPD4-208ENST00000439029 URB2Q14146 1524 aaKnown RBP19.18■□□□□ 0.66
SMPD4-208ENST00000439029 AEBP2Q6ZN18 517 aaPredicted RBP19.11■□□□□ 0.65
SMPD4-208ENST00000439029 CFTRP13569 1480 aa19.1■□□□□ 0.65
SMPD4-208ENST00000439029 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
SMPD4-208ENST00000439029 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
SMPD4-208ENST00000439029 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
SMPD4-208ENST00000439029 FBLN2P98095 1184 aa18.93■□□□□ 0.62
SMPD4-208ENST00000439029 EIF4G3O43432 1585 aaKnown RBP18.88■□□□□ 0.61
SMPD4-208ENST00000439029 CHD1O14646 1710 aa18.88■□□□□ 0.61
SMPD4-208ENST00000439029 AQRO60306 1485 aaKnown RBP eCLIP18.85■□□□□ 0.611e-6■■■□□ 17.7
SMPD4-208ENST00000439029 TOPBP1Q92547 1522 aa18.84■□□□□ 0.61
SMPD4-208ENST00000439029 TOP2AP11388 1531 aaKnown RBP18.84■□□□□ 0.61
SMPD4-208ENST00000439029 RSF1Q96T23 1441 aaPredicted RBP18.8■□□□□ 0.6
SMPD4-208ENST00000439029 PRDM2Q13029 1718 aa18.78■□□□□ 0.6
SMPD4-208ENST00000439029 TARBP1Q13395 1621 aaKnown RBP18.69■□□□□ 0.58
SMPD4-208ENST00000439029 CCDC88BA6NC98 1476 aa18.69■□□□□ 0.58
SMPD4-208ENST00000439029 DNMBPQ6XZF7 1577 aa18.68■□□□□ 0.58
SMPD4-208ENST00000439029 ABCC8Q09428 1581 aa18.66■□□□□ 0.58
SMPD4-208ENST00000439029 TDRD9Q8NDG6 1382 aaKnown RBP18.65■□□□□ 0.58
SMPD4-208ENST00000439029 RAD54L2Q9Y4B4 1467 aa18.64■□□□□ 0.57
SMPD4-208ENST00000439029 CLASP1Q7Z460 1538 aa18.61■□□□□ 0.57
SMPD4-208ENST00000439029 POLA1P09884 1462 aaPredicted RBP18.61■□□□□ 0.57
SMPD4-208ENST00000439029 CHMP7Q8WUX9 453 aaPredicted RBP18.61■□□□□ 0.57
SMPD4-208ENST00000439029 SNAPC4Q5SXM2 1469 aa18.6■□□□□ 0.57
SMPD4-208ENST00000439029 SOGA1O94964 1423 aa18.54■□□□□ 0.56
SMPD4-208ENST00000439029 SYNJ1O43426 1573 aa18.53■□□□□ 0.56
SMPD4-208ENST00000439029 GAPVD1Q14C86 1478 aa18.52■□□□□ 0.55
SMPD4-208ENST00000439029 MAGI1Q96QZ7 1491 aaPredicted RBP18.44■□□□□ 0.54
SMPD4-208ENST00000439029 SYNJ2O15056 1496 aa18.42■□□□□ 0.54
SMPD4-208ENST00000439029 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
SMPD4-208ENST00000439029 GRIN2BQ13224 1484 aa18.41■□□□□ 0.54
SMPD4-208ENST00000439029 ERCC6L2Q5T890 1561 aa18.38■□□□□ 0.53
SMPD4-208ENST00000439029 ILDR1Q86SU0 546 aaPredicted RBP18.38■□□□□ 0.53
SMPD4-208ENST00000439029 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
SMPD4-208ENST00000439029 CUX1P39880 1505 aa18.3■□□□□ 0.52
SMPD4-208ENST00000439029 PBRM1Q86U86 1689 aa18.28■□□□□ 0.52
SMPD4-208ENST00000439029 KIF13AQ9H1H9 1805 aa18.25■□□□□ 0.51
SMPD4-208ENST00000439029 KDM4FA0A1W2PPD8 638 aa18.23■□□□□ 0.51
SMPD4-208ENST00000439029 CEP170Q5SW79 1584 aa18.22■□□□□ 0.51
SMPD4-208ENST00000439029 FAM69CQ0P6D2 419 aa18.19■□□□□ 0.5
SMPD4-208ENST00000439029 GRIN2AQ12879 1464 aa18.18■□□□□ 0.5
SMPD4-208ENST00000439029 ABCA5Q8WWZ7 1642 aa18.14■□□□□ 0.49
SMPD4-208ENST00000439029 NUP160Q12769 1436 aa18.12■□□□□ 0.49
SMPD4-208ENST00000439029 ABCA10Q8WWZ4 1543 aa18.12■□□□□ 0.49
SMPD4-208ENST00000439029 SHROOM2Q13796 1616 aa18.09■□□□□ 0.49
SMPD4-208ENST00000439029 ADAMTS12P58397 1594 aa18.08■□□□□ 0.48
SMPD4-208ENST00000439029 PRG4Q92954 1404 aaPredicted RBP18.07■□□□□ 0.48
SMPD4-208ENST00000439029 ABCC10Q5T3U5 1492 aa18.07■□□□□ 0.48
SMPD4-208ENST00000439029 NPM1P06748 294 aaKnown RBP eCLIP18.05■□□□□ 0.48
SMPD4-208ENST00000439029 KDM6BO15054 1643 aa18.04■□□□□ 0.48
SMPD4-208ENST00000439029 JPH4Q96JJ6 628 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms