RNA–Protein interactions for RNA: ENST00000435997.2

SPTLC1P4-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 4, humanhuman

BASIC

Gene SPTLC1P4, Length 260 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P4-201ENST00000435997 NISCHQ9Y2I1 1504 aa27.81■■■□□ 2.04
SPTLC1P4-201ENST00000435997 CCDC180Q9P1Z9 1646 aa24.96■■□□□ 1.59
SPTLC1P4-201ENST00000435997 ABCC9O60706 1549 aa24.95■■□□□ 1.58
SPTLC1P4-201ENST00000435997 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
SPTLC1P4-201ENST00000435997 NACADO15069 1562 aa23.62■■□□□ 1.37
SPTLC1P4-201ENST00000435997 DNAJC5BQ9UF47 199 aa23.45■■□□□ 1.34
SPTLC1P4-201ENST00000435997 MYO15BQ96JP2 1530 aa23.37■■□□□ 1.33
SPTLC1P4-201ENST00000435997 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
SPTLC1P4-201ENST00000435997 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
SPTLC1P4-201ENST00000435997 UNC13AQ9UPW8 1703 aa23.15■■□□□ 1.3
SPTLC1P4-201ENST00000435997 BICRAQ9NZM4 1560 aa23.11■■□□□ 1.29
SPTLC1P4-201ENST00000435997 ZCCHC6Q5VYS8 1495 aaKnown RBP23.1■■□□□ 1.29
SPTLC1P4-201ENST00000435997 DCAF1Q9Y4B6 1507 aa23.03■■□□□ 1.28
SPTLC1P4-201ENST00000435997 SHROOM4Q9ULL8 1493 aa22.88■■□□□ 1.25
SPTLC1P4-201ENST00000435997 SCRIBQ14160 1630 aa22.68■■□□□ 1.22
SPTLC1P4-201ENST00000435997 CC2D2AQ9P2K1 1620 aa22.55■■□□□ 1.2
SPTLC1P4-201ENST00000435997 EIF4G1Q04637 1599 aaKnown RBP22.53■■□□□ 1.2
SPTLC1P4-201ENST00000435997 CECR2Q9BXF3 1484 aa22.51■■□□□ 1.19
SPTLC1P4-201ENST00000435997 AEBP2Q6ZN18 517 aaPredicted RBP22.39■■□□□ 1.17
SPTLC1P4-201ENST00000435997 NCAPD3P42695 1498 aa21.83■■□□□ 1.09
SPTLC1P4-201ENST00000435997 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
SPTLC1P4-201ENST00000435997 SMARCA4P51532 1647 aa21.69■■□□□ 1.06
SPTLC1P4-201ENST00000435997 HMGXB3Q12766 1538 aa21.68■■□□□ 1.06
SPTLC1P4-201ENST00000435997 SMARCA2P51531 1590 aa21.66■■□□□ 1.06
SPTLC1P4-201ENST00000435997 CUX2O14529 1486 aa21.59■■□□□ 1.05
SPTLC1P4-201ENST00000435997 BAZ1AQ9NRL2 1556 aaPredicted RBP21.57■■□□□ 1.04
SPTLC1P4-201ENST00000435997 PEG3Q9GZU2 1588 aa21.56■■□□□ 1.04
SPTLC1P4-201ENST00000435997 DNAJC5Q9H3Z4 198 aa21.55■■□□□ 1.04
SPTLC1P4-201ENST00000435997 ERCC6Q03468 1493 aa21.52■■□□□ 1.04
SPTLC1P4-201ENST00000435997 BAZ1BQ9UIG0 1483 aaKnown RBP21.49■■□□□ 1.03
SPTLC1P4-201ENST00000435997 NESP48681 1621 aa21.44■■□□□ 1.02
SPTLC1P4-201ENST00000435997 MROH2BQ7Z745 1585 aa21.41■■□□□ 1.02
SPTLC1P4-201ENST00000435997 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
SPTLC1P4-201ENST00000435997 THOC2Q8NI27 1593 aaKnown RBP21.28■■□□□ 1
SPTLC1P4-201ENST00000435997 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
SPTLC1P4-201ENST00000435997 CADPSQ9ULU8 1353 aa21.13■□□□□ 0.97
SPTLC1P4-201ENST00000435997 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
SPTLC1P4-201ENST00000435997 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
SPTLC1P4-201ENST00000435997 WIZO95785 1651 aa21.09■□□□□ 0.97
SPTLC1P4-201ENST00000435997 MRC2Q9UBG0 1479 aa21.01■□□□□ 0.95
SPTLC1P4-201ENST00000435997 WDR62O43379 1518 aa21■□□□□ 0.95
SPTLC1P4-201ENST00000435997 RSF1Q96T23 1441 aaPredicted RBP20.97■□□□□ 0.95
SPTLC1P4-201ENST00000435997 CFTRP13569 1480 aa20.92■□□□□ 0.94
SPTLC1P4-201ENST00000435997 TOP2AP11388 1531 aaKnown RBP20.9■□□□□ 0.94
SPTLC1P4-201ENST00000435997 CEP164Q9UPV0 1460 aa20.9■□□□□ 0.94
SPTLC1P4-201ENST00000435997 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
SPTLC1P4-201ENST00000435997 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
SPTLC1P4-201ENST00000435997 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
SPTLC1P4-201ENST00000435997 PRDM2Q13029 1718 aa20.6■□□□□ 0.89
SPTLC1P4-201ENST00000435997 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
SPTLC1P4-201ENST00000435997 TOPBP1Q92547 1522 aa20.49■□□□□ 0.87
SPTLC1P4-201ENST00000435997 OSCARQ8IYS5 282 aa20.49■□□□□ 0.87
SPTLC1P4-201ENST00000435997 TRIM41Q8WV44 630 aa20.49■□□□□ 0.87
SPTLC1P4-201ENST00000435997 ZNF608Q9ULD9 1512 aaPredicted RBP20.47■□□□□ 0.87
SPTLC1P4-201ENST00000435997 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
SPTLC1P4-201ENST00000435997 DNMBPQ6XZF7 1577 aa20.41■□□□□ 0.86
SPTLC1P4-201ENST00000435997 EIF4G3O43432 1585 aaKnown RBP20.35■□□□□ 0.85
SPTLC1P4-201ENST00000435997 TARBP1Q13395 1621 aaKnown RBP20.31■□□□□ 0.84
SPTLC1P4-201ENST00000435997 POLA1P09884 1462 aaPredicted RBP20.3■□□□□ 0.84
SPTLC1P4-201ENST00000435997 RIMBP3CA6NJZ7 1639 aa20.27■□□□□ 0.83
SPTLC1P4-201ENST00000435997 RIMBP3BA6NNM3 1639 aa20.27■□□□□ 0.83
SPTLC1P4-201ENST00000435997 RIMBP3Q9UFD9 1639 aa20.27■□□□□ 0.83
SPTLC1P4-201ENST00000435997 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
SPTLC1P4-201ENST00000435997 AQRO60306 1485 aaKnown RBP eCLIP20.24■□□□□ 0.83
SPTLC1P4-201ENST00000435997 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
SPTLC1P4-201ENST00000435997 WDR97A6NE52 1622 aa20.14■□□□□ 0.81
SPTLC1P4-201ENST00000435997 FGD5Q6ZNL6 1462 aa20.14■□□□□ 0.81
SPTLC1P4-201ENST00000435997 SOGA1O94964 1423 aa20.14■□□□□ 0.81
SPTLC1P4-201ENST00000435997 CUX1P39880 1505 aa20.13■□□□□ 0.81
SPTLC1P4-201ENST00000435997 CHD1O14646 1710 aa20.13■□□□□ 0.81
SPTLC1P4-201ENST00000435997 TDRD9Q8NDG6 1382 aaKnown RBP20.09■□□□□ 0.81
SPTLC1P4-201ENST00000435997 SNAPC4Q5SXM2 1469 aa20.06■□□□□ 0.8
SPTLC1P4-201ENST00000435997 ARAP1Q96P48 1450 aa20.06■□□□□ 0.8
SPTLC1P4-201ENST00000435997 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
SPTLC1P4-201ENST00000435997 CLASP1Q7Z460 1538 aa20.02■□□□□ 0.8
SPTLC1P4-201ENST00000435997 GRIN2BQ13224 1484 aa20.01■□□□□ 0.79
SPTLC1P4-201ENST00000435997 FBLN2P98095 1184 aa20■□□□□ 0.79
SPTLC1P4-201ENST00000435997 CYB5RLQ6IPT4 315 aa19.98■□□□□ 0.79
SPTLC1P4-201ENST00000435997 SYNJ2O15056 1496 aa19.97■□□□□ 0.79
SPTLC1P4-201ENST00000435997 ABCA10Q8WWZ4 1543 aa19.94■□□□□ 0.78
SPTLC1P4-201ENST00000435997 SYNJ1O43426 1573 aa19.93■□□□□ 0.78
SPTLC1P4-201ENST00000435997 GAPVD1Q14C86 1478 aa19.92■□□□□ 0.78
SPTLC1P4-201ENST00000435997 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
SPTLC1P4-201ENST00000435997 CHMP7Q8WUX9 453 aaPredicted RBP19.9■□□□□ 0.78
SPTLC1P4-201ENST00000435997 PBRM1Q86U86 1689 aa19.87■□□□□ 0.77
SPTLC1P4-201ENST00000435997 SUPT5HO00267 1087 aaKnown RBP19.83■□□□□ 0.77
SPTLC1P4-201ENST00000435997 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.76
SPTLC1P4-201ENST00000435997 TOP2BQ02880 1626 aa19.78■□□□□ 0.76
SPTLC1P4-201ENST00000435997 BIVM-ERCC5R4GMW8 1640 aa19.78■□□□□ 0.76
SPTLC1P4-201ENST00000435997 GRIN2AQ12879 1464 aa19.77■□□□□ 0.76
SPTLC1P4-201ENST00000435997 ADAMTS12P58397 1594 aa19.76■□□□□ 0.75
SPTLC1P4-201ENST00000435997 NUP160Q12769 1436 aa19.75■□□□□ 0.75
SPTLC1P4-201ENST00000435997 TRHP20396 242 aaPredicted RBP19.71■□□□□ 0.75
SPTLC1P4-201ENST00000435997 CEP170Q5SW79 1584 aa19.7■□□□□ 0.74
SPTLC1P4-201ENST00000435997 FHAD1B1AJZ9 1412 aa19.68■□□□□ 0.74
SPTLC1P4-201ENST00000435997 ERICH3Q5RHP9 1530 aa19.68■□□□□ 0.74
SPTLC1P4-201ENST00000435997 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
SPTLC1P4-201ENST00000435997 SHROOM2Q13796 1616 aa19.64■□□□□ 0.73
SPTLC1P4-201ENST00000435997 RUSC2Q8N2Y8 1516 aa19.5■□□□□ 0.71
SPTLC1P4-201ENST00000435997 PRG4Q92954 1404 aaPredicted RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms