RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
LINC00539-203ENST00000434601 CCDC180Q9P1Z9 1646 aa23.76■■□□□ 1.39
LINC00539-203ENST00000434601 ABCC9O60706 1549 aa23.72■■□□□ 1.39
LINC00539-203ENST00000434601 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
LINC00539-203ENST00000434601 NACADO15069 1562 aa22.46■■□□□ 1.19
LINC00539-203ENST00000434601 DCAF8L2P0C7V8 631 aa22.28■■□□□ 1.16
LINC00539-203ENST00000434601 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
LINC00539-203ENST00000434601 MYO15BQ96JP2 1530 aa22.15■■□□□ 1.14
LINC00539-203ENST00000434601 UNC13AQ9UPW8 1703 aa22.11■■□□□ 1.13
LINC00539-203ENST00000434601 PABPN1Q86U42 306 aaKnown RBP eCLIP22.05■■□□□ 1.12
LINC00539-203ENST00000434601 BICRAQ9NZM4 1560 aa21.91■■□□□ 1.1
LINC00539-203ENST00000434601 ZCCHC6Q5VYS8 1495 aaKnown RBP21.86■■□□□ 1.09
LINC00539-203ENST00000434601 DCAF1Q9Y4B6 1507 aa21.82■■□□□ 1.08
LINC00539-203ENST00000434601 SHROOM4Q9ULL8 1493 aa21.71■■□□□ 1.07
LINC00539-203ENST00000434601 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
LINC00539-203ENST00000434601 CC2D2AQ9P2K1 1620 aa21.47■■□□□ 1.03
LINC00539-203ENST00000434601 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
LINC00539-203ENST00000434601 CECR2Q9BXF3 1484 aa21.4■■□□□ 1.02
LINC00539-203ENST00000434601 NCAPD3P42695 1498 aa20.71■□□□□ 0.91
LINC00539-203ENST00000434601 ATAD2BQ9ULI0 1458 aa20.61■□□□□ 0.89
LINC00539-203ENST00000434601 SMARCA2P51531 1590 aa20.6■□□□□ 0.89
LINC00539-203ENST00000434601 DNAJC5Q9H3Z4 198 aa20.59■□□□□ 0.89
LINC00539-203ENST00000434601 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
LINC00539-203ENST00000434601 HMGXB3Q12766 1538 aa20.56■□□□□ 0.88
LINC00539-203ENST00000434601 CUX2O14529 1486 aa20.55■□□□□ 0.88
LINC00539-203ENST00000434601 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
LINC00539-203ENST00000434601 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
LINC00539-203ENST00000434601 BAZ1BQ9UIG0 1483 aaKnown RBP20.43■□□□□ 0.86
LINC00539-203ENST00000434601 PEG3Q9GZU2 1588 aa20.41■□□□□ 0.86
LINC00539-203ENST00000434601 NESP48681 1621 aa20.34■□□□□ 0.85
LINC00539-203ENST00000434601 LAMC3Q9Y6N6 1575 aa20.29■□□□□ 0.84
LINC00539-203ENST00000434601 MROH2BQ7Z745 1585 aa20.28■□□□□ 0.84
LINC00539-203ENST00000434601 THOC2Q8NI27 1593 aaKnown RBP20.19■□□□□ 0.82
LINC00539-203ENST00000434601 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
LINC00539-203ENST00000434601 KIF21AQ7Z4S6 1674 aa20.13■□□□□ 0.81
LINC00539-203ENST00000434601 CADPSQ9ULU8 1353 aa20.08■□□□□ 0.8
LINC00539-203ENST00000434601 RSF1Q96T23 1441 aaPredicted RBP20.07■□□□□ 0.8
LINC00539-203ENST00000434601 WIZO95785 1651 aa20.06■□□□□ 0.8
LINC00539-203ENST00000434601 SUPT5HO00267 1087 aaKnown RBP20.05■□□□□ 0.8
LINC00539-203ENST00000434601 MRC2Q9UBG0 1479 aa19.96■□□□□ 0.79
LINC00539-203ENST00000434601 WDR62O43379 1518 aa19.92■□□□□ 0.78
LINC00539-203ENST00000434601 CEP164Q9UPV0 1460 aa19.88■□□□□ 0.77
LINC00539-203ENST00000434601 FANCD2Q9BXW9 1451 aa19.83■□□□□ 0.76
LINC00539-203ENST00000434601 CFTRP13569 1480 aa19.82■□□□□ 0.76
LINC00539-203ENST00000434601 TOP2AP11388 1531 aaKnown RBP19.81■□□□□ 0.76
LINC00539-203ENST00000434601 PRDM2Q13029 1718 aa19.71■□□□□ 0.75
LINC00539-203ENST00000434601 URB2Q14146 1524 aaKnown RBP19.65■□□□□ 0.74
LINC00539-203ENST00000434601 TRIM41Q8WV44 630 aa19.62■□□□□ 0.73
LINC00539-203ENST00000434601 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
LINC00539-203ENST00000434601 CCDC88BA6NC98 1476 aa19.57■□□□□ 0.72
LINC00539-203ENST00000434601 IFT140Q96RY7 1462 aa19.49■□□□□ 0.71
LINC00539-203ENST00000434601 ABCC8Q09428 1581 aa19.49■□□□□ 0.71
LINC00539-203ENST00000434601 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
LINC00539-203ENST00000434601 ZNF608Q9ULD9 1512 aaPredicted RBP19.4■□□□□ 0.7
LINC00539-203ENST00000434601 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.69
LINC00539-203ENST00000434601 EIF4G3O43432 1585 aaKnown RBP19.33■□□□□ 0.69
LINC00539-203ENST00000434601 RIMBP3CA6NJZ7 1639 aa19.32■□□□□ 0.68
LINC00539-203ENST00000434601 RIMBP3BA6NNM3 1639 aa19.32■□□□□ 0.68
LINC00539-203ENST00000434601 RIMBP3Q9UFD9 1639 aa19.32■□□□□ 0.68
LINC00539-203ENST00000434601 TARBP1Q13395 1621 aaKnown RBP19.29■□□□□ 0.68
LINC00539-203ENST00000434601 ARHGEF11O15085 1522 aa19.25■□□□□ 0.67
LINC00539-203ENST00000434601 AQRO60306 1485 aaKnown RBP eCLIP19.23■□□□□ 0.67
LINC00539-203ENST00000434601 POLA1P09884 1462 aaPredicted RBP19.23■□□□□ 0.67
LINC00539-203ENST00000434601 CHD1O14646 1710 aa19.23■□□□□ 0.67
LINC00539-203ENST00000434601 WDR97A6NE52 1622 aa19.17■□□□□ 0.66
LINC00539-203ENST00000434601 SOGA1O94964 1423 aa19.17■□□□□ 0.66
LINC00539-203ENST00000434601 FBLN2P98095 1184 aa19.16■□□□□ 0.66
LINC00539-203ENST00000434601 RAD54L2Q9Y4B4 1467 aa19.14■□□□□ 0.65
LINC00539-203ENST00000434601 CHIC1Q5VXU3 224 aa19.12■□□□□ 0.65
LINC00539-203ENST00000434601 CYB5RLQ6IPT4 315 aa19.11■□□□□ 0.65
LINC00539-203ENST00000434601 FGD5Q6ZNL6 1462 aa19.1■□□□□ 0.65
LINC00539-203ENST00000434601 TDRD9Q8NDG6 1382 aaKnown RBP19.1■□□□□ 0.65
LINC00539-203ENST00000434601 CUX1P39880 1505 aa19.06■□□□□ 0.64
LINC00539-203ENST00000434601 SNAPC4Q5SXM2 1469 aa19.04■□□□□ 0.64
LINC00539-203ENST00000434601 MAGI1Q96QZ7 1491 aaPredicted RBP19.04■□□□□ 0.64
LINC00539-203ENST00000434601 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
LINC00539-203ENST00000434601 GRIN2BQ13224 1484 aa19.02■□□□□ 0.63
LINC00539-203ENST00000434601 ARAP1Q96P48 1450 aa19.02■□□□□ 0.63
LINC00539-203ENST00000434601 SYNJ1O43426 1573 aa19.01■□□□□ 0.63
LINC00539-203ENST00000434601 CLASP1Q7Z460 1538 aa18.98■□□□□ 0.63
LINC00539-203ENST00000434601 SYNJ2O15056 1496 aa18.97■□□□□ 0.63
LINC00539-203ENST00000434601 PBRM1Q86U86 1689 aa18.96■□□□□ 0.63
LINC00539-203ENST00000434601 TRHP20396 242 aaPredicted RBP18.94■□□□□ 0.62
LINC00539-203ENST00000434601 GAPVD1Q14C86 1478 aa18.94■□□□□ 0.62
LINC00539-203ENST00000434601 WRNQ14191 1432 aaPredicted RBP eCLIP18.91■□□□□ 0.62
LINC00539-203ENST00000434601 ABCA10Q8WWZ4 1543 aa18.91■□□□□ 0.62
LINC00539-203ENST00000434601 ABCA5Q8WWZ7 1642 aa18.88■□□□□ 0.61
LINC00539-203ENST00000434601 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
LINC00539-203ENST00000434601 TOP2BQ02880 1626 aa18.83■□□□□ 0.61
LINC00539-203ENST00000434601 GRIN2AQ12879 1464 aa18.76■□□□□ 0.59
LINC00539-203ENST00000434601 ADAMTS12P58397 1594 aa18.74■□□□□ 0.59
LINC00539-203ENST00000434601 FHAD1B1AJZ9 1412 aa18.7■□□□□ 0.58
LINC00539-203ENST00000434601 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
LINC00539-203ENST00000434601 NUP160Q12769 1436 aa18.69■□□□□ 0.58
LINC00539-203ENST00000434601 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
LINC00539-203ENST00000434601 SHROOM2Q13796 1616 aa18.64■□□□□ 0.57
LINC00539-203ENST00000434601 ERCC6L2Q5T890 1561 aa18.62■□□□□ 0.57
LINC00539-203ENST00000434601 EEA1Q15075 1411 aa18.58■□□□□ 0.57
LINC00539-203ENST00000434601 JPH4Q96JJ6 628 aa18.53■□□□□ 0.56
LINC00539-203ENST00000434601 PRG4Q92954 1404 aaPredicted RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms