RNA–Protein interactions for RNA: ENST00000433555.1

RPUSD3-207, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 3

Gene RPUSD3, Length 807 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-207ENST00000433555 NISCHQ9Y2I1 1504 aa46.31■■■■■ 5
RPUSD3-207ENST00000433555 CCDC180Q9P1Z9 1646 aa41.26■■■■■ 4.2
RPUSD3-207ENST00000433555 ABCC9O60706 1549 aa40.26■■■■■ 4.03
RPUSD3-207ENST00000433555 RB1CC1Q8TDY2 1594 aa38.72■■■■□ 3.79
RPUSD3-207ENST00000433555 NACADO15069 1562 aa38.66■■■■□ 3.78
RPUSD3-207ENST00000433555 ZCCHC6Q5VYS8 1495 aaKnown RBP38.64■■■■□ 3.78
RPUSD3-207ENST00000433555 DCAF8L2P0C7V8 631 aa38.44■■■■□ 3.74
RPUSD3-207ENST00000433555 MYO15BQ96JP2 1530 aa38.43■■■■□ 3.74
RPUSD3-207ENST00000433555 DCAF1Q9Y4B6 1507 aa38.3■■■■□ 3.72
RPUSD3-207ENST00000433555 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
RPUSD3-207ENST00000433555 BICRAQ9NZM4 1560 aa37.67■■■■□ 3.62
RPUSD3-207ENST00000433555 SCRIBQ14160 1630 aa37.66■■■■□ 3.62
RPUSD3-207ENST00000433555 PABPN1Q86U42 306 aaKnown RBP eCLIP37.52■■■■□ 3.6
RPUSD3-207ENST00000433555 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.53
RPUSD3-207ENST00000433555 DNAJC5BQ9UF47 199 aa36.87■■■■□ 3.49
RPUSD3-207ENST00000433555 EIF4G1Q04637 1599 aaKnown RBP36.61■■■■□ 3.45
RPUSD3-207ENST00000433555 CC2D2AQ9P2K1 1620 aa36.48■■■■□ 3.43
RPUSD3-207ENST00000433555 CECR2Q9BXF3 1484 aa36.12■■■■□ 3.37
RPUSD3-207ENST00000433555 SMARCA4P51532 1647 aa36.01■■■■□ 3.35
RPUSD3-207ENST00000433555 BAZ1AQ9NRL2 1556 aaPredicted RBP35.88■■■■□ 3.33
RPUSD3-207ENST00000433555 MROH2BQ7Z745 1585 aa35.74■■■■□ 3.31
RPUSD3-207ENST00000433555 ATAD2BQ9ULI0 1458 aa35.71■■■■□ 3.31
RPUSD3-207ENST00000433555 SMARCA2P51531 1590 aa35.65■■■■□ 3.3
RPUSD3-207ENST00000433555 NCAPD3P42695 1498 aa35.63■■■■□ 3.29
RPUSD3-207ENST00000433555 PEG3Q9GZU2 1588 aa35.62■■■■□ 3.29
RPUSD3-207ENST00000433555 HMGXB3Q12766 1538 aa35.56■■■■□ 3.28
RPUSD3-207ENST00000433555 WIZO95785 1651 aa35.41■■■■□ 3.26
RPUSD3-207ENST00000433555 BAZ1BQ9UIG0 1483 aaKnown RBP35.41■■■■□ 3.26
RPUSD3-207ENST00000433555 RSF1Q96T23 1441 aaPredicted RBP35.26■■■■□ 3.24
RPUSD3-207ENST00000433555 TOP2AP11388 1531 aaKnown RBP34.98■■■■□ 3.19
RPUSD3-207ENST00000433555 NESP48681 1621 aa34.89■■■■□ 3.18
RPUSD3-207ENST00000433555 LAMC3Q9Y6N6 1575 aa34.76■■■■□ 3.16
RPUSD3-207ENST00000433555 ERCC6Q03468 1493 aa34.62■■■■□ 3.13
RPUSD3-207ENST00000433555 KIF21AQ7Z4S6 1674 aa34.59■■■■□ 3.13
RPUSD3-207ENST00000433555 CADPSQ9ULU8 1353 aa34.56■■■■□ 3.12
RPUSD3-207ENST00000433555 CCDC88BA6NC98 1476 aa34.52■■■■□ 3.12
RPUSD3-207ENST00000433555 THOC2Q8NI27 1593 aaKnown RBP34.45■■■■□ 3.1
RPUSD3-207ENST00000433555 CFTRP13569 1480 aa34.43■■■■□ 3.1
RPUSD3-207ENST00000433555 PDS5BQ9NTI5 1447 aa34.39■■■■□ 3.1
RPUSD3-207ENST00000433555 PRDM2Q13029 1718 aa34.39■■■■□ 3.1
RPUSD3-207ENST00000433555 SUPT5HO00267 1087 aaKnown RBP34.27■■■■□ 3.08
RPUSD3-207ENST00000433555 CUX2O14529 1486 aa34.27■■■■□ 3.08
RPUSD3-207ENST00000433555 FANCD2Q9BXW9 1451 aa34.24■■■■□ 3.07
RPUSD3-207ENST00000433555 CEP164Q9UPV0 1460 aa34.2■■■■□ 3.06
RPUSD3-207ENST00000433555 MRC2Q9UBG0 1479 aa34.16■■■■□ 3.06
RPUSD3-207ENST00000433555 WDR62O43379 1518 aa34.1■■■■□ 3.05
RPUSD3-207ENST00000433555 URB2Q14146 1524 aaKnown RBP33.97■■■■□ 3.03
RPUSD3-207ENST00000433555 TOPBP1Q92547 1522 aa33.74■■■□□ 2.99
RPUSD3-207ENST00000433555 DNMBPQ6XZF7 1577 aa33.72■■■□□ 2.99
RPUSD3-207ENST00000433555 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
RPUSD3-207ENST00000433555 CUX1P39880 1505 aa33.54■■■□□ 2.96
RPUSD3-207ENST00000433555 POLA1P09884 1462 aaPredicted RBP33.45■■■□□ 2.95
RPUSD3-207ENST00000433555 IFT140Q96RY7 1462 aa33.45■■■□□ 2.95
RPUSD3-207ENST00000433555 TARBP1Q13395 1621 aaKnown RBP33.43■■■□□ 2.94
RPUSD3-207ENST00000433555 ZNF608Q9ULD9 1512 aaPredicted RBP33.39■■■□□ 2.94
RPUSD3-207ENST00000433555 FGD5Q6ZNL6 1462 aa33.38■■■□□ 2.93
RPUSD3-207ENST00000433555 EIF4G3O43432 1585 aaKnown RBP33.34■■■□□ 2.93
RPUSD3-207ENST00000433555 RAD54L2Q9Y4B4 1467 aa33.31■■■□□ 2.92
RPUSD3-207ENST00000433555 SYNJ1O43426 1573 aa33.3■■■□□ 2.92
RPUSD3-207ENST00000433555 BIVM-ERCC5R4GMW8 1640 aa33.3■■■□□ 2.92
RPUSD3-207ENST00000433555 WDR97A6NE52 1622 aa33.27■■■□□ 2.92
RPUSD3-207ENST00000433555 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
RPUSD3-207ENST00000433555 WRNQ14191 1432 aaPredicted RBP eCLIP33.22■■■□□ 2.91
RPUSD3-207ENST00000433555 SOGA1O94964 1423 aa33.2■■■□□ 2.91
RPUSD3-207ENST00000433555 AQRO60306 1485 aaKnown RBP eCLIP33.13■■■□□ 2.893e-6■■□□□ 13.8
RPUSD3-207ENST00000433555 DNAJC5Q9H3Z4 198 aa33.06■■■□□ 2.88
RPUSD3-207ENST00000433555 TDRD9Q8NDG6 1382 aaKnown RBP33.04■■■□□ 2.88
RPUSD3-207ENST00000433555 ABCA10Q8WWZ4 1543 aa33.03■■■□□ 2.88
RPUSD3-207ENST00000433555 ABCA5Q8WWZ7 1642 aa33.02■■■□□ 2.88
RPUSD3-207ENST00000433555 PBRM1Q86U86 1689 aa33■■■□□ 2.87
RPUSD3-207ENST00000433555 CHD1O14646 1710 aa32.95■■■□□ 2.87
RPUSD3-207ENST00000433555 SNAPC4Q5SXM2 1469 aa32.88■■■□□ 2.85
RPUSD3-207ENST00000433555 GAPVD1Q14C86 1478 aa32.86■■■□□ 2.85
RPUSD3-207ENST00000433555 GRIN2BQ13224 1484 aa32.86■■■□□ 2.85
RPUSD3-207ENST00000433555 MAGI1Q96QZ7 1491 aaPredicted RBP32.79■■■□□ 2.84
RPUSD3-207ENST00000433555 ADAMTS12P58397 1594 aa32.7■■■□□ 2.82
RPUSD3-207ENST00000433555 OSCARQ8IYS5 282 aa32.68■■■□□ 2.82
RPUSD3-207ENST00000433555 SYNJ2O15056 1496 aa32.66■■■□□ 2.82
RPUSD3-207ENST00000433555 ERICH3Q5RHP9 1530 aa32.63■■■□□ 2.81
RPUSD3-207ENST00000433555 FBLN2P98095 1184 aa32.58■■■□□ 2.81
RPUSD3-207ENST00000433555 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
RPUSD3-207ENST00000433555 CHMP7Q8WUX9 453 aaPredicted RBP32.48■■■□□ 2.79
RPUSD3-207ENST00000433555 KIF27Q86VH2 1401 aa32.48■■■□□ 2.79
RPUSD3-207ENST00000433555 GRIN2AQ12879 1464 aa32.48■■■□□ 2.79
RPUSD3-207ENST00000433555 FHAD1B1AJZ9 1412 aa32.47■■■□□ 2.79
RPUSD3-207ENST00000433555 RIMBP3CA6NJZ7 1639 aa32.45■■■□□ 2.79
RPUSD3-207ENST00000433555 RIMBP3BA6NNM3 1639 aa32.45■■■□□ 2.79
RPUSD3-207ENST00000433555 RIMBP3Q9UFD9 1639 aa32.45■■■□□ 2.79
RPUSD3-207ENST00000433555 CEP170Q5SW79 1584 aa32.41■■■□□ 2.78
RPUSD3-207ENST00000433555 CUL7Q14999 1698 aa32.4■■■□□ 2.78
RPUSD3-207ENST00000433555 ARHGEF11O15085 1522 aa32.39■■■□□ 2.78
RPUSD3-207ENST00000433555 IGF1RP08069 1367 aa32.34■■■□□ 2.77
RPUSD3-207ENST00000433555 RUSC2Q8N2Y8 1516 aa32.34■■■□□ 2.77
RPUSD3-207ENST00000433555 NUP160Q12769 1436 aa32.34■■■□□ 2.77
RPUSD3-207ENST00000433555 TRIM41Q8WV44 630 aa32.31■■■□□ 2.76
RPUSD3-207ENST00000433555 SHROOM2Q13796 1616 aa32.18■■■□□ 2.74
RPUSD3-207ENST00000433555 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
RPUSD3-207ENST00000433555 CARMIL1Q5VZK9 1371 aa32.14■■■□□ 2.74
RPUSD3-207ENST00000433555 ERCC6L2Q5T890 1561 aa32.12■■■□□ 2.73
RPUSD3-207ENST00000433555 CHIC1Q5VXU3 224 aa32.02■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms