RNA–Protein interactions for RNA: ENST00000428680.6

CNOT4-206, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 4,642 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-206ENST00000428680 NISCHQ9Y2I1 1504 aa15.88■□□□□ 0.13
CNOT4-206ENST00000428680 CCDC180Q9P1Z9 1646 aa14.62□□□□□ -0.07
CNOT4-206ENST00000428680 ABCC9O60706 1549 aa13.97□□□□□ -0.17
CNOT4-206ENST00000428680 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
CNOT4-206ENST00000428680 NACADO15069 1562 aa13.8□□□□□ -0.2
CNOT4-206ENST00000428680 MYO15BQ96JP2 1530 aa13.77□□□□□ -0.2
CNOT4-206ENST00000428680 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
CNOT4-206ENST00000428680 DCAF1Q9Y4B6 1507 aa13.5□□□□□ -0.25
CNOT4-206ENST00000428680 DCAF8L2P0C7V8 631 aa13.5□□□□□ -0.25
CNOT4-206ENST00000428680 ZCCHC6Q5VYS8 1495 aaKnown RBP13.19□□□□□ -0.3
CNOT4-206ENST00000428680 UNC13AQ9UPW8 1703 aa13.01□□□□□ -0.33
CNOT4-206ENST00000428680 BICRAQ9NZM4 1560 aa12.96□□□□□ -0.33
CNOT4-206ENST00000428680 EIF4G1Q04637 1599 aaKnown RBP12.81□□□□□ -0.36
CNOT4-206ENST00000428680 CECR2Q9BXF3 1484 aa12.81□□□□□ -0.36
CNOT4-206ENST00000428680 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
CNOT4-206ENST00000428680 SCRIBQ14160 1630 aa12.78□□□□□ -0.36
CNOT4-206ENST00000428680 CC2D2AQ9P2K1 1620 aa12.77□□□□□ -0.36
CNOT4-206ENST00000428680 DNAJC5BQ9UF47 199 aa12.66□□□□□ -0.38
CNOT4-206ENST00000428680 SMARCA2P51531 1590 aa12.66□□□□□ -0.38
CNOT4-206ENST00000428680 CUX2O14529 1486 aa12.62□□□□□ -0.39
CNOT4-206ENST00000428680 HMGXB3Q12766 1538 aa12.6□□□□□ -0.39
CNOT4-206ENST00000428680 NCAPD3P42695 1498 aa12.57□□□□□ -0.4
CNOT4-206ENST00000428680 BAZ1AQ9NRL2 1556 aaPredicted RBP12.52□□□□□ -0.4
CNOT4-206ENST00000428680 PEG3Q9GZU2 1588 aa12.44□□□□□ -0.42
CNOT4-206ENST00000428680 ERCC6Q03468 1493 aa12.41□□□□□ -0.42
CNOT4-206ENST00000428680 LAMC3Q9Y6N6 1575 aa12.4□□□□□ -0.42
CNOT4-206ENST00000428680 SMARCA4P51532 1647 aa12.4□□□□□ -0.43
CNOT4-206ENST00000428680 BAZ1BQ9UIG0 1483 aaKnown RBP12.37□□□□□ -0.43
CNOT4-206ENST00000428680 ATAD2BQ9ULI0 1458 aa12.37□□□□□ -0.43
CNOT4-206ENST00000428680 PDS5BQ9NTI5 1447 aa12.35□□□□□ -0.43
CNOT4-206ENST00000428680 DNAJC5Q9H3Z4 198 aa12.2□□□□□ -0.46
CNOT4-206ENST00000428680 ABCC8Q09428 1581 aa12.15□□□□□ -0.46
CNOT4-206ENST00000428680 MRC2Q9UBG0 1479 aa12.14□□□□□ -0.47
CNOT4-206ENST00000428680 CADPSQ9ULU8 1353 aa12.12□□□□□ -0.47
CNOT4-206ENST00000428680 THOC2Q8NI27 1593 aaKnown RBP12.08□□□□□ -0.48
CNOT4-206ENST00000428680 CEP164Q9UPV0 1460 aa12.07□□□□□ -0.48
CNOT4-206ENST00000428680 FAM9AQ8IZU1 332 aaPredicted RBP12.07□□□□□ -0.48
CNOT4-206ENST00000428680 WDR62O43379 1518 aa12.06□□□□□ -0.48
CNOT4-206ENST00000428680 WDR97A6NE52 1622 aa12.05□□□□□ -0.48
CNOT4-206ENST00000428680 TOP2AP11388 1531 aaKnown RBP12.05□□□□□ -0.48
CNOT4-206ENST00000428680 PRDM2Q13029 1718 aa12.04□□□□□ -0.48
CNOT4-206ENST00000428680 SUPT5HO00267 1087 aaKnown RBP11.98□□□□□ -0.49
CNOT4-206ENST00000428680 MROH2BQ7Z745 1585 aa11.97□□□□□ -0.49
CNOT4-206ENST00000428680 CFTRP13569 1480 aa11.96□□□□□ -0.49
CNOT4-206ENST00000428680 IFT140Q96RY7 1462 aa11.93□□□□□ -0.5
CNOT4-206ENST00000428680 FANCD2Q9BXW9 1451 aa11.92□□□□□ -0.5
CNOT4-206ENST00000428680 KIF21AQ7Z4S6 1674 aa11.91□□□□□ -0.5
CNOT4-206ENST00000428680 NESP48681 1621 aa11.83□□□□□ -0.52
CNOT4-206ENST00000428680 RSF1Q96T23 1441 aaPredicted RBP11.82□□□□□ -0.52
CNOT4-206ENST00000428680 OSCARQ8IYS5 282 aa11.81□□□□□ -0.52
CNOT4-206ENST00000428680 DNMBPQ6XZF7 1577 aa11.8□□□□□ -0.52
CNOT4-206ENST00000428680 WIZO95785 1651 aa11.8□□□□□ -0.52
CNOT4-206ENST00000428680 EHMT2Q96KQ7 1210 aa11.69□□□□□ -0.54
CNOT4-206ENST00000428680 TOPBP1Q92547 1522 aa11.67□□□□□ -0.54
CNOT4-206ENST00000428680 MAGI1Q96QZ7 1491 aaPredicted RBP11.67□□□□□ -0.54
CNOT4-206ENST00000428680 URB2Q14146 1524 aaKnown RBP11.66□□□□□ -0.54
CNOT4-206ENST00000428680 SYNJ1O43426 1573 aa11.65□□□□□ -0.54
CNOT4-206ENST00000428680 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
CNOT4-206ENST00000428680 APLP2Q06481 763 aa11.63□□□□□ -0.55
CNOT4-206ENST00000428680 GRIN2BQ13224 1484 aa11.59□□□□□ -0.55
CNOT4-206ENST00000428680 EIF4G3O43432 1585 aaKnown RBP11.56□□□□□ -0.56
CNOT4-206ENST00000428680 SOGA1O94964 1423 aa11.53□□□□□ -0.56
CNOT4-206ENST00000428680 TARBP1Q13395 1621 aaKnown RBP11.52□□□□□ -0.57
CNOT4-206ENST00000428680 SYNJ2O15056 1496 aa11.52□□□□□ -0.57
CNOT4-206ENST00000428680 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
CNOT4-206ENST00000428680 POLA1P09884 1462 aaPredicted RBP11.49□□□□□ -0.57
CNOT4-206ENST00000428680 RIMBP3CA6NJZ7 1639 aa11.48□□□□□ -0.57
CNOT4-206ENST00000428680 RIMBP3BA6NNM3 1639 aa11.48□□□□□ -0.57
CNOT4-206ENST00000428680 RIMBP3Q9UFD9 1639 aa11.48□□□□□ -0.57
CNOT4-206ENST00000428680 WRNQ14191 1432 aaPredicted RBP eCLIP11.48□□□□□ -0.57
CNOT4-206ENST00000428680 ABCA10Q8WWZ4 1543 aa11.47□□□□□ -0.57
CNOT4-206ENST00000428680 ARHGEF11O15085 1522 aa11.47□□□□□ -0.57
CNOT4-206ENST00000428680 CHMP7Q8WUX9 453 aaPredicted RBP11.45□□□□□ -0.58
CNOT4-206ENST00000428680 ERICH3Q5RHP9 1530 aa11.44□□□□□ -0.58
CNOT4-206ENST00000428680 TRIM41Q8WV44 630 aa11.44□□□□□ -0.58
CNOT4-206ENST00000428680 RANGAP1P46060 587 aaPredicted RBP11.44□□□□□ -0.58
CNOT4-206ENST00000428680 FGD5Q6ZNL6 1462 aa11.43□□□□□ -0.58
CNOT4-206ENST00000428680 MYT1LQ9UL68 1186 aa11.43□□□□□ -0.58
CNOT4-206ENST00000428680 CLASP1Q7Z460 1538 aa11.43□□□□□ -0.58
CNOT4-206ENST00000428680 GAPVD1Q14C86 1478 aa11.42□□□□□ -0.58
CNOT4-206ENST00000428680 CHD1O14646 1710 aa11.42□□□□□ -0.58
CNOT4-206ENST00000428680 FHAD1B1AJZ9 1412 aa11.41□□□□□ -0.58
CNOT4-206ENST00000428680 BIVM-ERCC5R4GMW8 1640 aa11.41□□□□□ -0.58
CNOT4-206ENST00000428680 PBRM1Q86U86 1689 aa11.4□□□□□ -0.58
CNOT4-206ENST00000428680 SNAPC4Q5SXM2 1469 aa11.4□□□□□ -0.59
CNOT4-206ENST00000428680 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
CNOT4-206ENST00000428680 TOP2BQ02880 1626 aa11.37□□□□□ -0.59
CNOT4-206ENST00000428680 TTBK1Q5TCY1 1321 aaPredicted RBP11.36□□□□□ -0.59
CNOT4-206ENST00000428680 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
CNOT4-206ENST00000428680 CUL7Q14999 1698 aa11.35□□□□□ -0.59
CNOT4-206ENST00000428680 CUX1P39880 1505 aa11.33□□□□□ -0.6
CNOT4-206ENST00000428680 ADAMTS12P58397 1594 aa11.33□□□□□ -0.6
CNOT4-206ENST00000428680 NPM1P06748 294 aaKnown RBP eCLIP11.33□□□□□ -0.6
CNOT4-206ENST00000428680 GRIN2AQ12879 1464 aa11.31□□□□□ -0.6
CNOT4-206ENST00000428680 AQRO60306 1485 aaKnown RBP eCLIP11.31□□□□□ -0.62e-7■■■■□ 23.2
CNOT4-206ENST00000428680 NUP160Q12769 1436 aa11.31□□□□□ -0.6
CNOT4-206ENST00000428680 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.3□□□□□ -0.6
CNOT4-206ENST00000428680 HNRNPUL2Q1KMD3 747 aaKnown RBP11.3□□□□□ -0.6
CNOT4-206ENST00000428680 FBLN2P98095 1184 aa11.29□□□□□ -0.6
CNOT4-206ENST00000428680 ARAP1Q96P48 1450 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms