RNA–Protein interactions for RNA: ENST00000428130.6

RDH11-202, Transcript of retinol dehydrogenase 11, humanhuman

TSL 2 BASIC

Gene RDH11, Length 1,064 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-202ENST00000428130 NISCHQ9Y2I1 1504 aa26.57■■□□□ 1.84
RDH11-202ENST00000428130 ABCC9O60706 1549 aa24.38■■□□□ 1.49
RDH11-202ENST00000428130 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
RDH11-202ENST00000428130 DNAJC5BQ9UF47 199 aa23.21■■□□□ 1.31
RDH11-202ENST00000428130 RB1CC1Q8TDY2 1594 aa23.08■■□□□ 1.29
RDH11-202ENST00000428130 NACADO15069 1562 aa22.81■■□□□ 1.24
RDH11-202ENST00000428130 UNC13AQ9UPW8 1703 aa22.69■■□□□ 1.22
RDH11-202ENST00000428130 PABPN1Q86U42 306 aaKnown RBP eCLIP22.58■■□□□ 1.21
RDH11-202ENST00000428130 DCAF8L2P0C7V8 631 aa22.47■■□□□ 1.19
RDH11-202ENST00000428130 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
RDH11-202ENST00000428130 MYO15BQ96JP2 1530 aa22.37■■□□□ 1.17
RDH11-202ENST00000428130 SHROOM4Q9ULL8 1493 aa22.08■■□□□ 1.12
RDH11-202ENST00000428130 CC2D2AQ9P2K1 1620 aa22.06■■□□□ 1.12
RDH11-202ENST00000428130 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
RDH11-202ENST00000428130 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
RDH11-202ENST00000428130 DCAF1Q9Y4B6 1507 aa21.94■■□□□ 1.1
RDH11-202ENST00000428130 EIF4G1Q04637 1599 aaKnown RBP21.91■■□□□ 1.1
RDH11-202ENST00000428130 SCRIBQ14160 1630 aa21.88■■□□□ 1.09
RDH11-202ENST00000428130 DNAJC5Q9H3Z4 198 aa21.58■■□□□ 1.05
RDH11-202ENST00000428130 AEBP2Q6ZN18 517 aaPredicted RBP21.23■□□□□ 0.99
RDH11-202ENST00000428130 CUX2O14529 1486 aa21.2■□□□□ 0.98
RDH11-202ENST00000428130 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
RDH11-202ENST00000428130 NCAPD3P42695 1498 aa21.04■□□□□ 0.96
RDH11-202ENST00000428130 ATAD2BQ9ULI0 1458 aa20.92■□□□□ 0.94
RDH11-202ENST00000428130 HMGXB3Q12766 1538 aa20.89■□□□□ 0.94
RDH11-202ENST00000428130 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
RDH11-202ENST00000428130 NESP48681 1621 aa20.86■□□□□ 0.93
RDH11-202ENST00000428130 SMARCA4P51532 1647 aa20.86■□□□□ 0.93
RDH11-202ENST00000428130 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
RDH11-202ENST00000428130 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
RDH11-202ENST00000428130 LAMC3Q9Y6N6 1575 aa20.68■□□□□ 0.9
RDH11-202ENST00000428130 KIF21AQ7Z4S6 1674 aa20.67■□□□□ 0.9
RDH11-202ENST00000428130 PEG3Q9GZU2 1588 aa20.66■□□□□ 0.9
RDH11-202ENST00000428130 BAZ1AQ9NRL2 1556 aaPredicted RBP20.66■□□□□ 0.9
RDH11-202ENST00000428130 PDS5BQ9NTI5 1447 aa20.5■□□□□ 0.87
RDH11-202ENST00000428130 MROH2BQ7Z745 1585 aa20.47■□□□□ 0.87
RDH11-202ENST00000428130 TRIM41Q8WV44 630 aa20.44■□□□□ 0.86
RDH11-202ENST00000428130 WDR62O43379 1518 aa20.37■□□□□ 0.85
RDH11-202ENST00000428130 MRC2Q9UBG0 1479 aa20.37■□□□□ 0.85
RDH11-202ENST00000428130 CADPSQ9ULU8 1353 aa20.35■□□□□ 0.85
RDH11-202ENST00000428130 WIZO95785 1651 aa20.26■□□□□ 0.83
RDH11-202ENST00000428130 CEP164Q9UPV0 1460 aa20.21■□□□□ 0.83
RDH11-202ENST00000428130 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
RDH11-202ENST00000428130 CHIC1Q5VXU3 224 aa20.1■□□□□ 0.81
RDH11-202ENST00000428130 OSCARQ8IYS5 282 aa20.08■□□□□ 0.81
RDH11-202ENST00000428130 CFTRP13569 1480 aa20.06■□□□□ 0.8
RDH11-202ENST00000428130 URB2Q14146 1524 aaKnown RBP20.03■□□□□ 0.8
RDH11-202ENST00000428130 PRDM2Q13029 1718 aa19.99■□□□□ 0.79
RDH11-202ENST00000428130 RIMBP3CA6NJZ7 1639 aa19.99■□□□□ 0.79
RDH11-202ENST00000428130 RIMBP3BA6NNM3 1639 aa19.99■□□□□ 0.79
RDH11-202ENST00000428130 RIMBP3Q9UFD9 1639 aa19.99■□□□□ 0.79
RDH11-202ENST00000428130 TOP2AP11388 1531 aaKnown RBP19.93■□□□□ 0.78
RDH11-202ENST00000428130 RSF1Q96T23 1441 aaPredicted RBP19.86■□□□□ 0.77
RDH11-202ENST00000428130 ARHGEF11O15085 1522 aa19.85■□□□□ 0.77
RDH11-202ENST00000428130 ZNF608Q9ULD9 1512 aaPredicted RBP19.83■□□□□ 0.77
RDH11-202ENST00000428130 IFT140Q96RY7 1462 aa19.81■□□□□ 0.76
RDH11-202ENST00000428130 EIF4G3O43432 1585 aaKnown RBP19.76■□□□□ 0.75
RDH11-202ENST00000428130 TOPBP1Q92547 1522 aa19.74■□□□□ 0.75
RDH11-202ENST00000428130 CHD1O14646 1710 aa19.73■□□□□ 0.75
RDH11-202ENST00000428130 CCDC88BA6NC98 1476 aa19.68■□□□□ 0.74
RDH11-202ENST00000428130 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
RDH11-202ENST00000428130 ABCC8Q09428 1581 aa19.65■□□□□ 0.74
RDH11-202ENST00000428130 TARBP1Q13395 1621 aaKnown RBP19.65■□□□□ 0.74
RDH11-202ENST00000428130 CYB5RLQ6IPT4 315 aa19.64■□□□□ 0.73
RDH11-202ENST00000428130 ARAP1Q96P48 1450 aa19.62■□□□□ 0.73
RDH11-202ENST00000428130 AQRO60306 1485 aaKnown RBP eCLIP19.58■□□□□ 0.728e-7■■■■■ 28.7
RDH11-202ENST00000428130 TRHP20396 242 aaPredicted RBP19.54■□□□□ 0.72
RDH11-202ENST00000428130 POLA1P09884 1462 aaPredicted RBP19.51■□□□□ 0.71
RDH11-202ENST00000428130 FBLN2P98095 1184 aa19.47■□□□□ 0.71
RDH11-202ENST00000428130 CLASP1Q7Z460 1538 aa19.45■□□□□ 0.7
RDH11-202ENST00000428130 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
RDH11-202ENST00000428130 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
RDH11-202ENST00000428130 SNAPC4Q5SXM2 1469 aa19.39■□□□□ 0.69
RDH11-202ENST00000428130 SYNJ1O43426 1573 aa19.37■□□□□ 0.69
RDH11-202ENST00000428130 TDRD9Q8NDG6 1382 aaKnown RBP19.37■□□□□ 0.69
RDH11-202ENST00000428130 SOGA1O94964 1423 aa19.36■□□□□ 0.69
RDH11-202ENST00000428130 FGD5Q6ZNL6 1462 aa19.33■□□□□ 0.68
RDH11-202ENST00000428130 MAGI1Q96QZ7 1491 aaPredicted RBP19.33■□□□□ 0.68
RDH11-202ENST00000428130 PBRM1Q86U86 1689 aa19.29■□□□□ 0.68
RDH11-202ENST00000428130 CHMP7Q8WUX9 453 aaPredicted RBP19.27■□□□□ 0.68
RDH11-202ENST00000428130 GRIN2BQ13224 1484 aa19.27■□□□□ 0.67
RDH11-202ENST00000428130 CUX1P39880 1505 aa19.26■□□□□ 0.67
RDH11-202ENST00000428130 SYNJ2O15056 1496 aa19.26■□□□□ 0.67
RDH11-202ENST00000428130 GAPVD1Q14C86 1478 aa19.22■□□□□ 0.67
RDH11-202ENST00000428130 ABCA5Q8WWZ7 1642 aa19.15■□□□□ 0.66
RDH11-202ENST00000428130 ERCC6L2Q5T890 1561 aa19.11■□□□□ 0.65
RDH11-202ENST00000428130 ABCA10Q8WWZ4 1543 aa19.09■□□□□ 0.65
RDH11-202ENST00000428130 GRIN2AQ12879 1464 aa19.04■□□□□ 0.64
RDH11-202ENST00000428130 KIF13AQ9H1H9 1805 aa19.04■□□□□ 0.64
RDH11-202ENST00000428130 CEP170Q5SW79 1584 aa19.03■□□□□ 0.64
RDH11-202ENST00000428130 ADAMTS12P58397 1594 aa19.02■□□□□ 0.64
RDH11-202ENST00000428130 SHROOM2Q13796 1616 aa19.02■□□□□ 0.64
RDH11-202ENST00000428130 NUP160Q12769 1436 aa18.99■□□□□ 0.63
RDH11-202ENST00000428130 BIVM-ERCC5R4GMW8 1640 aa18.91■□□□□ 0.62
RDH11-202ENST00000428130 FHAD1B1AJZ9 1412 aa18.88■□□□□ 0.61
RDH11-202ENST00000428130 WRNQ14191 1432 aaPredicted RBP eCLIP18.88■□□□□ 0.61
RDH11-202ENST00000428130 TOP2BQ02880 1626 aa18.87■□□□□ 0.61
RDH11-202ENST00000428130 ERICH3Q5RHP9 1530 aa18.85■□□□□ 0.61
RDH11-202ENST00000428130 PRG4Q92954 1404 aaPredicted RBP18.81■□□□□ 0.6
RDH11-202ENST00000428130 RUSC2Q8N2Y8 1516 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms