RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 NISCHQ9Y2I1 1504 aa48.13■■■■■ 5.29
CNEP1R1-202ENST00000427478 CCDC180Q9P1Z9 1646 aa41.7■■■■■ 4.27
CNEP1R1-202ENST00000427478 ZCCHC6Q5VYS8 1495 aaKnown RBP40.54■■■■■ 4.08
CNEP1R1-202ENST00000427478 SHROOM4Q9ULL8 1493 aa39.84■■■■□ 3.97
CNEP1R1-202ENST00000427478 DCAF8L2P0C7V8 631 aa39.75■■■■□ 3.95
CNEP1R1-202ENST00000427478 DCAF1Q9Y4B6 1507 aa39.67■■■■□ 3.94
CNEP1R1-202ENST00000427478 ABCC9O60706 1549 aa39.13■■■■□ 3.86
CNEP1R1-202ENST00000427478 MYO15BQ96JP2 1530 aa38.97■■■■□ 3.83
CNEP1R1-202ENST00000427478 NACADO15069 1562 aa38.69■■■■□ 3.78
CNEP1R1-202ENST00000427478 SCRIBQ14160 1630 aa38.59■■■■□ 3.77
CNEP1R1-202ENST00000427478 SUPT5HO00267 1087 aaKnown RBP38.53■■■■□ 3.76
CNEP1R1-202ENST00000427478 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
CNEP1R1-202ENST00000427478 UNC13AQ9UPW8 1703 aa37.7■■■■□ 3.63
CNEP1R1-202ENST00000427478 RSF1Q96T23 1441 aaPredicted RBP37.55■■■■□ 3.6
CNEP1R1-202ENST00000427478 CECR2Q9BXF3 1484 aa37.45■■■■□ 3.59
CNEP1R1-202ENST00000427478 MROH2BQ7Z745 1585 aa37.27■■■■□ 3.56
CNEP1R1-202ENST00000427478 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
CNEP1R1-202ENST00000427478 BAZ1AQ9NRL2 1556 aaPredicted RBP37.11■■■■□ 3.53
CNEP1R1-202ENST00000427478 WIZO95785 1651 aa37.06■■■■□ 3.52
CNEP1R1-202ENST00000427478 CHIC1Q5VXU3 224 aa37.05■■■■□ 3.52
CNEP1R1-202ENST00000427478 PABPN1Q86U42 306 aaKnown RBP eCLIP37.02■■■■□ 3.52
CNEP1R1-202ENST00000427478 SMARCA4P51532 1647 aa36.94■■■■□ 3.5
CNEP1R1-202ENST00000427478 TOP2AP11388 1531 aaKnown RBP36.57■■■■□ 3.45
CNEP1R1-202ENST00000427478 PEG3Q9GZU2 1588 aa36.37■■■■□ 3.41
CNEP1R1-202ENST00000427478 SMARCA2P51531 1590 aa36.29■■■■□ 3.4
CNEP1R1-202ENST00000427478 CCDC88BA6NC98 1476 aa36.23■■■■□ 3.39
CNEP1R1-202ENST00000427478 EIF4G1Q04637 1599 aaKnown RBP36.2■■■■□ 3.39
CNEP1R1-202ENST00000427478 ATAD2BQ9ULI0 1458 aa36.16■■■■□ 3.38
CNEP1R1-202ENST00000427478 TRIM41Q8WV44 630 aa36.1■■■■□ 3.37
CNEP1R1-202ENST00000427478 BAZ1BQ9UIG0 1483 aaKnown RBP36.01■■■■□ 3.36
CNEP1R1-202ENST00000427478 LOC105371045A0A1W2PR82 267 aa35.75■■■■□ 3.31
CNEP1R1-202ENST00000427478 ABCC8Q09428 1581 aa35.75■■■■□ 3.31
CNEP1R1-202ENST00000427478 HMGXB3Q12766 1538 aa35.72■■■■□ 3.31
CNEP1R1-202ENST00000427478 NCAPD3P42695 1498 aa35.69■■■■□ 3.3
CNEP1R1-202ENST00000427478 FAM9AQ8IZU1 332 aaPredicted RBP35.59■■■■□ 3.29
CNEP1R1-202ENST00000427478 CC2D2AQ9P2K1 1620 aa35.39■■■■□ 3.26
CNEP1R1-202ENST00000427478 WRNQ14191 1432 aaPredicted RBP eCLIP35.33■■■■□ 3.25
CNEP1R1-202ENST00000427478 SYNJ1O43426 1573 aa35.24■■■■□ 3.23
CNEP1R1-202ENST00000427478 EHMT2Q96KQ7 1210 aa35.18■■■■□ 3.22
CNEP1R1-202ENST00000427478 SOGA1O94964 1423 aa35.13■■■■□ 3.21
CNEP1R1-202ENST00000427478 CFTRP13569 1480 aa35.09■■■■□ 3.21
CNEP1R1-202ENST00000427478 PRDM2Q13029 1718 aa35.03■■■■□ 3.2
CNEP1R1-202ENST00000427478 RUSC2Q8N2Y8 1516 aa35■■■■□ 3.19
CNEP1R1-202ENST00000427478 EEA1Q15075 1411 aa35■■■■□ 3.19
CNEP1R1-202ENST00000427478 TOP2BQ02880 1626 aa34.99■■■■□ 3.19
CNEP1R1-202ENST00000427478 BIVM-ERCC5R4GMW8 1640 aa34.95■■■■□ 3.19
CNEP1R1-202ENST00000427478 CADPSQ9ULU8 1353 aa34.85■■■■□ 3.17
CNEP1R1-202ENST00000427478 CSRNP3Q8WYN3 585 aa34.83■■■■□ 3.17
CNEP1R1-202ENST00000427478 CUX1P39880 1505 aa34.81■■■■□ 3.16
CNEP1R1-202ENST00000427478 PCGF6Q9BYE7 350 aa34.66■■■■□ 3.14
CNEP1R1-202ENST00000427478 GOLGA3Q08378 1498 aa34.64■■■■□ 3.14
CNEP1R1-202ENST00000427478 KIF21BO75037 1637 aa34.61■■■■□ 3.13
CNEP1R1-202ENST00000427478 TNIKQ9UKE5 1360 aa34.58■■■■□ 3.13
CNEP1R1-202ENST00000427478 CEP164Q9UPV0 1460 aa34.57■■■■□ 3.12
CNEP1R1-202ENST00000427478 FANCD2Q9BXW9 1451 aa34.53■■■■□ 3.12
CNEP1R1-202ENST00000427478 NESP48681 1621 aa34.53■■■■□ 3.12
CNEP1R1-202ENST00000427478 CEP162Q5TB80 1403 aa34.51■■■■□ 3.12
CNEP1R1-202ENST00000427478 UBTFP17480 764 aaKnown RBP34.51■■■■□ 3.12
CNEP1R1-202ENST00000427478 LAMC3Q9Y6N6 1575 aa34.44■■■■□ 3.1
CNEP1R1-202ENST00000427478 DNAJC5BQ9UF47 199 aa34.42■■■■□ 3.1
CNEP1R1-202ENST00000427478 TRIM26Q12899 539 aaPredicted RBP34.41■■■■□ 3.1
CNEP1R1-202ENST00000427478 RAPGEF2Q9Y4G8 1499 aa34.38■■■■□ 3.09
CNEP1R1-202ENST00000427478 KIF27Q86VH2 1401 aa34.37■■■■□ 3.09
CNEP1R1-202ENST00000427478 FGD5Q6ZNL6 1462 aa34.35■■■■□ 3.09
CNEP1R1-202ENST00000427478 DNMBPQ6XZF7 1577 aa34.3■■■■□ 3.08
CNEP1R1-202ENST00000427478 PRXQ9BXM0 1461 aa34.26■■■■□ 3.07
CNEP1R1-202ENST00000427478 ERICH3Q5RHP9 1530 aa34.25■■■■□ 3.07
CNEP1R1-202ENST00000427478 CUX2O14529 1486 aa34.23■■■■□ 3.07
CNEP1R1-202ENST00000427478 TOPBP1Q92547 1522 aa34.22■■■■□ 3.07
CNEP1R1-202ENST00000427478 KIF21AQ7Z4S6 1674 aa34.14■■■■□ 3.06
CNEP1R1-202ENST00000427478 PDS5BQ9NTI5 1447 aa34.14■■■■□ 3.06
CNEP1R1-202ENST00000427478 PPARGC1BQ86YN6 1023 aaKnown RBP34.13■■■■□ 3.05
CNEP1R1-202ENST00000427478 CLIP1P30622 1438 aa34.12■■■■□ 3.05
CNEP1R1-202ENST00000427478 POLA1P09884 1462 aaPredicted RBP34.1■■■■□ 3.05
CNEP1R1-202ENST00000427478 URB2Q14146 1524 aaKnown RBP34.09■■■■□ 3.05
CNEP1R1-202ENST00000427478 RAD54L2Q9Y4B4 1467 aa34.04■■■■□ 3.04
CNEP1R1-202ENST00000427478 IGF1RP08069 1367 aa34■■■■□ 3.03
CNEP1R1-202ENST00000427478 HRCP23327 699 aa34■■■■□ 3.03
CNEP1R1-202ENST00000427478 ABCA10Q8WWZ4 1543 aa33.99■■■■□ 3.03
CNEP1R1-202ENST00000427478 RANGAP1P46060 587 aaPredicted RBP33.95■■■■□ 3.03
CNEP1R1-202ENST00000427478 WDR97A6NE52 1622 aa33.91■■■■□ 3.02
CNEP1R1-202ENST00000427478 VPS8Q8N3P4 1428 aa33.87■■■■□ 3.01
CNEP1R1-202ENST00000427478 CARMIL1Q5VZK9 1371 aa33.86■■■■□ 3.01
CNEP1R1-202ENST00000427478 TTBK1Q5TCY1 1321 aaPredicted RBP33.8■■■■□ 3
CNEP1R1-202ENST00000427478 ARAP1Q96P48 1450 aa33.74■■■□□ 2.99
CNEP1R1-202ENST00000427478 ABCA5Q8WWZ7 1642 aa33.73■■■□□ 2.99
CNEP1R1-202ENST00000427478 CUL7Q14999 1698 aa33.73■■■□□ 2.99
CNEP1R1-202ENST00000427478 MRC2Q9UBG0 1479 aa33.71■■■□□ 2.99
CNEP1R1-202ENST00000427478 TARBP1Q13395 1621 aaKnown RBP33.67■■■□□ 2.98
CNEP1R1-202ENST00000427478 TDRD9Q8NDG6 1382 aaKnown RBP33.65■■■□□ 2.98
CNEP1R1-202ENST00000427478 ARHGAP35Q9NRY4 1499 aa33.63■■■□□ 2.97
CNEP1R1-202ENST00000427478 GAPVD1Q14C86 1478 aa33.61■■■□□ 2.97
CNEP1R1-202ENST00000427478 APLP2Q06481 763 aa33.55■■■□□ 2.96
CNEP1R1-202ENST00000427478 WDR62O43379 1518 aa33.52■■■□□ 2.96
CNEP1R1-202ENST00000427478 CTTNBP2Q8WZ74 1663 aa33.51■■■□□ 2.95
CNEP1R1-202ENST00000427478 PBRM1Q86U86 1689 aa33.47■■■□□ 2.95
CNEP1R1-202ENST00000427478 ERCC6Q03468 1493 aa33.46■■■□□ 2.95
CNEP1R1-202ENST00000427478 THOC2Q8NI27 1593 aaKnown RBP33.36■■■□□ 2.93
CNEP1R1-202ENST00000427478 AQRO60306 1485 aaKnown RBP eCLIP33.35■■■□□ 2.938e-7■■■□□ 16.1
CNEP1R1-202ENST00000427478 IFT140Q96RY7 1462 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms