RNA–Protein interactions for RNA: ENST00000427461.1

LSG1-202, Transcript of large 60S subunit nuclear export GTPase 1, humanhuman

TSL 5

Gene LSG1, Length 755 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSG1-202ENST00000427461 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
LSG1-202ENST00000427461 ABCC9O60706 1549 aa22.74■■□□□ 1.23
LSG1-202ENST00000427461 DNAJC5BQ9UF47 199 aa22.08■■□□□ 1.13
LSG1-202ENST00000427461 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
LSG1-202ENST00000427461 RB1CC1Q8TDY2 1594 aa21.21■□□□□ 0.99
LSG1-202ENST00000427461 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
LSG1-202ENST00000427461 NACADO15069 1562 aa20.86■□□□□ 0.93
LSG1-202ENST00000427461 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
LSG1-202ENST00000427461 DNAJC5Q9H3Z4 198 aa20.75■□□□□ 0.91
LSG1-202ENST00000427461 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
LSG1-202ENST00000427461 BICRAQ9NZM4 1560 aa20.69■□□□□ 0.9
LSG1-202ENST00000427461 CECR2Q9BXF3 1484 aa20.52■□□□□ 0.88
LSG1-202ENST00000427461 CC2D2AQ9P2K1 1620 aa20.48■□□□□ 0.87
LSG1-202ENST00000427461 MYO15BQ96JP2 1530 aa20.27■□□□□ 0.83
LSG1-202ENST00000427461 EIF4G1Q04637 1599 aaKnown RBP20.22■□□□□ 0.83
LSG1-202ENST00000427461 SHROOM4Q9ULL8 1493 aa20.17■□□□□ 0.82
LSG1-202ENST00000427461 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
LSG1-202ENST00000427461 CUX2O14529 1486 aa19.81■□□□□ 0.76
LSG1-202ENST00000427461 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
LSG1-202ENST00000427461 DCAF1Q9Y4B6 1507 aa19.75■□□□□ 0.75
LSG1-202ENST00000427461 ERCC6Q03468 1493 aa19.63■□□□□ 0.73
LSG1-202ENST00000427461 TRIM41Q8WV44 630 aa19.59■□□□□ 0.73
LSG1-202ENST00000427461 NESP48681 1621 aa19.33■□□□□ 0.69
LSG1-202ENST00000427461 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
LSG1-202ENST00000427461 THOC2Q8NI27 1593 aaKnown RBP19.24■□□□□ 0.67
LSG1-202ENST00000427461 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
LSG1-202ENST00000427461 SMARCA2P51531 1590 aa19.1■□□□□ 0.65
LSG1-202ENST00000427461 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
LSG1-202ENST00000427461 KIF21AQ7Z4S6 1674 aa19.03■□□□□ 0.64
LSG1-202ENST00000427461 LAMC3Q9Y6N6 1575 aa18.97■□□□□ 0.63
LSG1-202ENST00000427461 SMARCA4P51532 1647 aa18.93■□□□□ 0.62
LSG1-202ENST00000427461 BAZ1BQ9UIG0 1483 aaKnown RBP18.91■□□□□ 0.62
LSG1-202ENST00000427461 BAZ1AQ9NRL2 1556 aaPredicted RBP18.89■□□□□ 0.62
LSG1-202ENST00000427461 PDS5BQ9NTI5 1447 aa18.88■□□□□ 0.61
LSG1-202ENST00000427461 OSCARQ8IYS5 282 aa18.82■□□□□ 0.6
LSG1-202ENST00000427461 MRC2Q9UBG0 1479 aa18.78■□□□□ 0.6
LSG1-202ENST00000427461 WDR62O43379 1518 aa18.77■□□□□ 0.6
LSG1-202ENST00000427461 AEBP2Q6ZN18 517 aaPredicted RBP18.76■□□□□ 0.59
LSG1-202ENST00000427461 PEG3Q9GZU2 1588 aa18.71■□□□□ 0.59
LSG1-202ENST00000427461 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
LSG1-202ENST00000427461 RIMBP3CA6NJZ7 1639 aa18.7■□□□□ 0.58
LSG1-202ENST00000427461 RIMBP3BA6NNM3 1639 aa18.7■□□□□ 0.58
LSG1-202ENST00000427461 RIMBP3Q9UFD9 1639 aa18.7■□□□□ 0.58
LSG1-202ENST00000427461 CADPSQ9ULU8 1353 aa18.68■□□□□ 0.58
LSG1-202ENST00000427461 MROH2BQ7Z745 1585 aa18.57■□□□□ 0.56
LSG1-202ENST00000427461 CEP164Q9UPV0 1460 aa18.56■□□□□ 0.56
LSG1-202ENST00000427461 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
LSG1-202ENST00000427461 TRHP20396 242 aaPredicted RBP18.54■□□□□ 0.56
LSG1-202ENST00000427461 CYB5RLQ6IPT4 315 aa18.49■□□□□ 0.55
LSG1-202ENST00000427461 FANCD2Q9BXW9 1451 aa18.48■□□□□ 0.55
LSG1-202ENST00000427461 URB2Q14146 1524 aaKnown RBP18.41■□□□□ 0.54
LSG1-202ENST00000427461 ZNF608Q9ULD9 1512 aaPredicted RBP18.33■□□□□ 0.53
LSG1-202ENST00000427461 WIZO95785 1651 aa18.33■□□□□ 0.52
LSG1-202ENST00000427461 ARAP1Q96P48 1450 aa18.33■□□□□ 0.52
LSG1-202ENST00000427461 CFTRP13569 1480 aa18.3■□□□□ 0.52
LSG1-202ENST00000427461 IFT140Q96RY7 1462 aa18.2■□□□□ 0.5
LSG1-202ENST00000427461 CHD1O14646 1710 aa18.19■□□□□ 0.5
LSG1-202ENST00000427461 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
LSG1-202ENST00000427461 FBLN2P98095 1184 aa18.11■□□□□ 0.49
LSG1-202ENST00000427461 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
LSG1-202ENST00000427461 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
LSG1-202ENST00000427461 TOPBP1Q92547 1522 aa18.06■□□□□ 0.48
LSG1-202ENST00000427461 PRDM2Q13029 1718 aa18.05■□□□□ 0.48
LSG1-202ENST00000427461 TOP2AP11388 1531 aaKnown RBP17.97■□□□□ 0.47
LSG1-202ENST00000427461 TARBP1Q13395 1621 aaKnown RBP17.96■□□□□ 0.47
LSG1-202ENST00000427461 CLASP1Q7Z460 1538 aa17.93■□□□□ 0.46
LSG1-202ENST00000427461 ILDR1Q86SU0 546 aaPredicted RBP17.9■□□□□ 0.46
LSG1-202ENST00000427461 DNMBPQ6XZF7 1577 aa17.89■□□□□ 0.45
LSG1-202ENST00000427461 ABCC8Q09428 1581 aa17.88■□□□□ 0.45
LSG1-202ENST00000427461 TDRD9Q8NDG6 1382 aaKnown RBP17.83■□□□□ 0.45
LSG1-202ENST00000427461 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
LSG1-202ENST00000427461 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
LSG1-202ENST00000427461 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
LSG1-202ENST00000427461 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
LSG1-202ENST00000427461 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
LSG1-202ENST00000427461 GAPVD1Q14C86 1478 aa17.81■□□□□ 0.44
LSG1-202ENST00000427461 CHMP7Q8WUX9 453 aaPredicted RBP17.8■□□□□ 0.44
LSG1-202ENST00000427461 SOGA1O94964 1423 aa17.72■□□□□ 0.43
LSG1-202ENST00000427461 MAGI1Q96QZ7 1491 aaPredicted RBP17.69■□□□□ 0.42
LSG1-202ENST00000427461 ERCC6L2Q5T890 1561 aa17.67■□□□□ 0.42
LSG1-202ENST00000427461 SYNJ2O15056 1496 aa17.66■□□□□ 0.42
LSG1-202ENST00000427461 KIF13AQ9H1H9 1805 aa17.65■□□□□ 0.42
LSG1-202ENST00000427461 KDM4FA0A1W2PPD8 638 aa17.64■□□□□ 0.41
LSG1-202ENST00000427461 GRIN2BQ13224 1484 aa17.63■□□□□ 0.41
LSG1-202ENST00000427461 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
LSG1-202ENST00000427461 FGD5Q6ZNL6 1462 aa17.61■□□□□ 0.41
LSG1-202ENST00000427461 PBRM1Q86U86 1689 aa17.55■□□□□ 0.4
LSG1-202ENST00000427461 CEP170Q5SW79 1584 aa17.5■□□□□ 0.39
LSG1-202ENST00000427461 CUX1P39880 1505 aa17.48■□□□□ 0.39
LSG1-202ENST00000427461 FAM69CQ0P6D2 419 aa17.46■□□□□ 0.39
LSG1-202ENST00000427461 GRIN2AQ12879 1464 aa17.43■□□□□ 0.38
LSG1-202ENST00000427461 KDM6BO15054 1643 aa17.41■□□□□ 0.38
LSG1-202ENST00000427461 ABCC10Q5T3U5 1492 aa17.41■□□□□ 0.38
LSG1-202ENST00000427461 SHROOM2Q13796 1616 aa17.39■□□□□ 0.38
LSG1-202ENST00000427461 ABCA5Q8WWZ7 1642 aa17.39■□□□□ 0.37
LSG1-202ENST00000427461 NUP160Q12769 1436 aa17.38■□□□□ 0.37
LSG1-202ENST00000427461 DIP2BQ9P265 1576 aa17.36■□□□□ 0.37
LSG1-202ENST00000427461 TSPOAP1O95153 1857 aa17.34■□□□□ 0.37
LSG1-202ENST00000427461 ABCA10Q8WWZ4 1543 aa17.32■□□□□ 0.36
LSG1-202ENST00000427461 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms