RNA–Protein interactions for RNA: ENST00000426539.1

GACAT3-201, gastric cancer associated transcript 3, humanhuman

TSL 3 BASIC

Gene GACAT3, Length 1,096 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GACAT3-201ENST00000426539 NISCHQ9Y2I1 1504 aa25.25■■□□□ 1.63
GACAT3-201ENST00000426539 AEBP2Q6ZN18 517 aaPredicted RBP22.93■■□□□ 1.26
GACAT3-201ENST00000426539 ABCC9O60706 1549 aa22.62■■□□□ 1.21
GACAT3-201ENST00000426539 CCDC180Q9P1Z9 1646 aa22.57■■□□□ 1.2
GACAT3-201ENST00000426539 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
GACAT3-201ENST00000426539 RB1CC1Q8TDY2 1594 aa21.49■■□□□ 1.03
GACAT3-201ENST00000426539 NACADO15069 1562 aa21.37■■□□□ 1.01
GACAT3-201ENST00000426539 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
GACAT3-201ENST00000426539 DNAJC5BQ9UF47 199 aa21.28■■□□□ 1
GACAT3-201ENST00000426539 MYO15BQ96JP2 1530 aa21.1■□□□□ 0.97
GACAT3-201ENST00000426539 PABPN1Q86U42 306 aaKnown RBP eCLIP21.1■□□□□ 0.97
GACAT3-201ENST00000426539 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
GACAT3-201ENST00000426539 ZCCHC6Q5VYS8 1495 aaKnown RBP20.94■□□□□ 0.94
GACAT3-201ENST00000426539 BICRAQ9NZM4 1560 aa20.93■□□□□ 0.94
GACAT3-201ENST00000426539 DCAF1Q9Y4B6 1507 aa20.85■□□□□ 0.93
GACAT3-201ENST00000426539 SCRIBQ14160 1630 aa20.61■□□□□ 0.89
GACAT3-201ENST00000426539 SHROOM4Q9ULL8 1493 aa20.6■□□□□ 0.89
GACAT3-201ENST00000426539 CC2D2AQ9P2K1 1620 aa20.42■□□□□ 0.86
GACAT3-201ENST00000426539 EIF4G1Q04637 1599 aaKnown RBP20.38■□□□□ 0.85
GACAT3-201ENST00000426539 CECR2Q9BXF3 1484 aa20.37■□□□□ 0.85
GACAT3-201ENST00000426539 NCAPD3P42695 1498 aa19.77■□□□□ 0.76
GACAT3-201ENST00000426539 ATAD2BQ9ULI0 1458 aa19.73■□□□□ 0.75
GACAT3-201ENST00000426539 PHF23Q9BUL5 403 aaPredicted RBP19.7■□□□□ 0.74
GACAT3-201ENST00000426539 SMARCA4P51532 1647 aa19.66■□□□□ 0.74
GACAT3-201ENST00000426539 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
GACAT3-201ENST00000426539 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
GACAT3-201ENST00000426539 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
GACAT3-201ENST00000426539 BAZ1AQ9NRL2 1556 aaPredicted RBP19.57■□□□□ 0.72
GACAT3-201ENST00000426539 BAZ1BQ9UIG0 1483 aaKnown RBP19.49■□□□□ 0.71
GACAT3-201ENST00000426539 PEG3Q9GZU2 1588 aa19.49■□□□□ 0.71
GACAT3-201ENST00000426539 ERCC6Q03468 1493 aa19.48■□□□□ 0.71
GACAT3-201ENST00000426539 MROH2BQ7Z745 1585 aa19.48■□□□□ 0.71
GACAT3-201ENST00000426539 DNAJC5Q9H3Z4 198 aa19.46■□□□□ 0.71
GACAT3-201ENST00000426539 NESP48681 1621 aa19.46■□□□□ 0.71
GACAT3-201ENST00000426539 CUX2O14529 1486 aa19.46■□□□□ 0.71
GACAT3-201ENST00000426539 LAMC3Q9Y6N6 1575 aa19.27■□□□□ 0.67
GACAT3-201ENST00000426539 THOC2Q8NI27 1593 aaKnown RBP19.22■□□□□ 0.67
GACAT3-201ENST00000426539 WIZO95785 1651 aa19.2■□□□□ 0.66
GACAT3-201ENST00000426539 CADPSQ9ULU8 1353 aa19.18■□□□□ 0.66
GACAT3-201ENST00000426539 PDS5BQ9NTI5 1447 aa19.17■□□□□ 0.66
GACAT3-201ENST00000426539 KIF21AQ7Z4S6 1674 aa19.13■□□□□ 0.65
GACAT3-201ENST00000426539 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
GACAT3-201ENST00000426539 MRC2Q9UBG0 1479 aa19.02■□□□□ 0.63
GACAT3-201ENST00000426539 WDR62O43379 1518 aa18.97■□□□□ 0.63
GACAT3-201ENST00000426539 TOP2AP11388 1531 aaKnown RBP18.97■□□□□ 0.63
GACAT3-201ENST00000426539 CFTRP13569 1480 aa18.96■□□□□ 0.63
GACAT3-201ENST00000426539 FANCD2Q9BXW9 1451 aa18.94■□□□□ 0.62
GACAT3-201ENST00000426539 CEP164Q9UPV0 1460 aa18.93■□□□□ 0.62
GACAT3-201ENST00000426539 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
GACAT3-201ENST00000426539 CCDC88BA6NC98 1476 aa18.78■□□□□ 0.6
GACAT3-201ENST00000426539 PRDM2Q13029 1718 aa18.65■□□□□ 0.58
GACAT3-201ENST00000426539 OSCARQ8IYS5 282 aa18.59■□□□□ 0.57
GACAT3-201ENST00000426539 TRIM41Q8WV44 630 aa18.59■□□□□ 0.57
GACAT3-201ENST00000426539 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
GACAT3-201ENST00000426539 ZNF608Q9ULD9 1512 aaPredicted RBP18.58■□□□□ 0.56
GACAT3-201ENST00000426539 IFT140Q96RY7 1462 aa18.57■□□□□ 0.56
GACAT3-201ENST00000426539 ABCC8Q09428 1581 aa18.51■□□□□ 0.55
GACAT3-201ENST00000426539 DNMBPQ6XZF7 1577 aa18.49■□□□□ 0.55
GACAT3-201ENST00000426539 EIF4G3O43432 1585 aaKnown RBP18.42■□□□□ 0.54
GACAT3-201ENST00000426539 TARBP1Q13395 1621 aaKnown RBP18.41■□□□□ 0.54
GACAT3-201ENST00000426539 AQRO60306 1485 aaKnown RBP eCLIP18.4■□□□□ 0.54
GACAT3-201ENST00000426539 POLA1P09884 1462 aaPredicted RBP18.4■□□□□ 0.54
GACAT3-201ENST00000426539 RAD54L2Q9Y4B4 1467 aa18.36■□□□□ 0.53
GACAT3-201ENST00000426539 RIMBP3CA6NJZ7 1639 aa18.33■□□□□ 0.52
GACAT3-201ENST00000426539 RIMBP3BA6NNM3 1639 aa18.33■□□□□ 0.52
GACAT3-201ENST00000426539 RIMBP3Q9UFD9 1639 aa18.33■□□□□ 0.52
GACAT3-201ENST00000426539 SOGA1O94964 1423 aa18.32■□□□□ 0.52
GACAT3-201ENST00000426539 PLPPR3Q6T4P5 718 aa18.31■□□□□ 0.52
GACAT3-201ENST00000426539 TDRD9Q8NDG6 1382 aaKnown RBP18.3■□□□□ 0.52
GACAT3-201ENST00000426539 ARHGEF11O15085 1522 aa18.29■□□□□ 0.52
GACAT3-201ENST00000426539 CUX1P39880 1505 aa18.29■□□□□ 0.52
GACAT3-201ENST00000426539 FGD5Q6ZNL6 1462 aa18.29■□□□□ 0.52
GACAT3-201ENST00000426539 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
GACAT3-201ENST00000426539 CHD1O14646 1710 aa18.24■□□□□ 0.51
GACAT3-201ENST00000426539 FBLN2P98095 1184 aa18.24■□□□□ 0.51
GACAT3-201ENST00000426539 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
GACAT3-201ENST00000426539 WDR97A6NE52 1622 aa18.18■□□□□ 0.5
GACAT3-201ENST00000426539 CYB5RLQ6IPT4 315 aa18.16■□□□□ 0.5
GACAT3-201ENST00000426539 GRIN2BQ13224 1484 aa18.14■□□□□ 0.5
GACAT3-201ENST00000426539 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
GACAT3-201ENST00000426539 MAGI1Q96QZ7 1491 aaPredicted RBP18.13■□□□□ 0.49
GACAT3-201ENST00000426539 CHMP7Q8WUX9 453 aaPredicted RBP18.11■□□□□ 0.49
GACAT3-201ENST00000426539 CLASP1Q7Z460 1538 aa18.1■□□□□ 0.49
GACAT3-201ENST00000426539 ABCA10Q8WWZ4 1543 aa18.08■□□□□ 0.49
GACAT3-201ENST00000426539 GAPVD1Q14C86 1478 aa18.08■□□□□ 0.49
GACAT3-201ENST00000426539 FOXD1Q16676 465 aa18.08■□□□□ 0.48
GACAT3-201ENST00000426539 SYNJ2O15056 1496 aa18.07■□□□□ 0.48
GACAT3-201ENST00000426539 ABCA5Q8WWZ7 1642 aa18.04■□□□□ 0.48
GACAT3-201ENST00000426539 SYNJ1O43426 1573 aa18.04■□□□□ 0.48
GACAT3-201ENST00000426539 PBRM1Q86U86 1689 aa18.01■□□□□ 0.47
GACAT3-201ENST00000426539 WRNQ14191 1432 aaPredicted RBP eCLIP18■□□□□ 0.47
GACAT3-201ENST00000426539 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
GACAT3-201ENST00000426539 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
GACAT3-201ENST00000426539 GRIN2AQ12879 1464 aa17.91■□□□□ 0.46
GACAT3-201ENST00000426539 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
GACAT3-201ENST00000426539 ADAMTS12P58397 1594 aa17.9■□□□□ 0.46
GACAT3-201ENST00000426539 NUP160Q12769 1436 aa17.88■□□□□ 0.45
GACAT3-201ENST00000426539 FHAD1B1AJZ9 1412 aa17.86■□□□□ 0.45
GACAT3-201ENST00000426539 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
GACAT3-201ENST00000426539 ERCC6L2Q5T890 1561 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms