RNA–Protein interactions for RNA: ENST00000424270.6

SDCBP-203, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SDCBP, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-203ENST00000424270 NISCHQ9Y2I1 1504 aa16.27■□□□□ 0.2
SDCBP-203ENST00000424270 ABCC9O60706 1549 aa15.6■□□□□ 0.09
SDCBP-203ENST00000424270 AEBP2Q6ZN18 517 aaPredicted RBP15.22■□□□□ 0.03
SDCBP-203ENST00000424270 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
SDCBP-203ENST00000424270 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
SDCBP-203ENST00000424270 CHIC1Q5VXU3 224 aa14.63□□□□□ -0.07
SDCBP-203ENST00000424270 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
SDCBP-203ENST00000424270 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
SDCBP-203ENST00000424270 DNAJC5Q9H3Z4 198 aa14.35□□□□□ -0.11
SDCBP-203ENST00000424270 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
SDCBP-203ENST00000424270 NACADO15069 1562 aa14.22□□□□□ -0.13
SDCBP-203ENST00000424270 CECR2Q9BXF3 1484 aa14.1□□□□□ -0.15
SDCBP-203ENST00000424270 UNC13AQ9UPW8 1703 aa14.06□□□□□ -0.16
SDCBP-203ENST00000424270 BICRAQ9NZM4 1560 aa14□□□□□ -0.17
SDCBP-203ENST00000424270 CC2D2AQ9P2K1 1620 aa13.98□□□□□ -0.17
SDCBP-203ENST00000424270 EIF4G1Q04637 1599 aaKnown RBP13.79□□□□□ -0.2
SDCBP-203ENST00000424270 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
SDCBP-203ENST00000424270 MYO15BQ96JP2 1530 aa13.72□□□□□ -0.21
SDCBP-203ENST00000424270 TRIM41Q8WV44 630 aa13.66□□□□□ -0.22
SDCBP-203ENST00000424270 CUX2O14529 1486 aa13.63□□□□□ -0.23
SDCBP-203ENST00000424270 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
SDCBP-203ENST00000424270 ERCC6Q03468 1493 aa13.59□□□□□ -0.23
SDCBP-203ENST00000424270 ZCCHC6Q5VYS8 1495 aaKnown RBP13.33□□□□□ -0.28
SDCBP-203ENST00000424270 DCAF1Q9Y4B6 1507 aa13.33□□□□□ -0.28
SDCBP-203ENST00000424270 NESP48681 1621 aa13.17□□□□□ -0.3
SDCBP-203ENST00000424270 NCAPD3P42695 1498 aa13.11□□□□□ -0.31
SDCBP-203ENST00000424270 SMARCA2P51531 1590 aa13.11□□□□□ -0.31
SDCBP-203ENST00000424270 SENP3Q9H4L4 574 aaPredicted RBP13.1□□□□□ -0.31
SDCBP-203ENST00000424270 THOC2Q8NI27 1593 aaKnown RBP13.09□□□□□ -0.31
SDCBP-203ENST00000424270 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
SDCBP-203ENST00000424270 OSCARQ8IYS5 282 aa13□□□□□ -0.33
SDCBP-203ENST00000424270 PDS5BQ9NTI5 1447 aa12.96□□□□□ -0.33
SDCBP-203ENST00000424270 BAZ1AQ9NRL2 1556 aaPredicted RBP12.96□□□□□ -0.33
SDCBP-203ENST00000424270 HMGXB3Q12766 1538 aa12.96□□□□□ -0.33
SDCBP-203ENST00000424270 LAMC3Q9Y6N6 1575 aa12.95□□□□□ -0.34
SDCBP-203ENST00000424270 KIF21AQ7Z4S6 1674 aa12.95□□□□□ -0.34
SDCBP-203ENST00000424270 TRHP20396 242 aaPredicted RBP12.94□□□□□ -0.34
SDCBP-203ENST00000424270 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
SDCBP-203ENST00000424270 PHF23Q9BUL5 403 aaPredicted RBP12.88□□□□□ -0.35
SDCBP-203ENST00000424270 MRC2Q9UBG0 1479 aa12.86□□□□□ -0.35
SDCBP-203ENST00000424270 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
SDCBP-203ENST00000424270 RIMBP3CA6NJZ7 1639 aa12.81□□□□□ -0.36
SDCBP-203ENST00000424270 RIMBP3BA6NNM3 1639 aa12.81□□□□□ -0.36
SDCBP-203ENST00000424270 RIMBP3Q9UFD9 1639 aa12.81□□□□□ -0.36
SDCBP-203ENST00000424270 WDR62O43379 1518 aa12.79□□□□□ -0.36
SDCBP-203ENST00000424270 CYB5RLQ6IPT4 315 aa12.78□□□□□ -0.36
SDCBP-203ENST00000424270 CADPSQ9ULU8 1353 aa12.74□□□□□ -0.37
SDCBP-203ENST00000424270 ARHGEF11O15085 1522 aa12.72□□□□□ -0.37
SDCBP-203ENST00000424270 CEP164Q9UPV0 1460 aa12.72□□□□□ -0.37
SDCBP-203ENST00000424270 PEG3Q9GZU2 1588 aa12.63□□□□□ -0.39
SDCBP-203ENST00000424270 FANCD2Q9BXW9 1451 aa12.62□□□□□ -0.39
SDCBP-203ENST00000424270 FBLN2P98095 1184 aa12.54□□□□□ -0.4
SDCBP-203ENST00000424270 MROH2BQ7Z745 1585 aa12.54□□□□□ -0.4
SDCBP-203ENST00000424270 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
SDCBP-203ENST00000424270 URB2Q14146 1524 aaKnown RBP12.51□□□□□ -0.41
SDCBP-203ENST00000424270 ZNF608Q9ULD9 1512 aaPredicted RBP12.48□□□□□ -0.41
SDCBP-203ENST00000424270 ILDR1Q86SU0 546 aaPredicted RBP12.46□□□□□ -0.41
SDCBP-203ENST00000424270 IFT140Q96RY7 1462 aa12.46□□□□□ -0.42
SDCBP-203ENST00000424270 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
SDCBP-203ENST00000424270 CFTRP13569 1480 aa12.42□□□□□ -0.42
SDCBP-203ENST00000424270 CHD1O14646 1710 aa12.4□□□□□ -0.43
SDCBP-203ENST00000424270 EIF4G3O43432 1585 aaKnown RBP12.38□□□□□ -0.43
SDCBP-203ENST00000424270 WIZO95785 1651 aa12.38□□□□□ -0.43
SDCBP-203ENST00000424270 AQRO60306 1485 aaKnown RBP eCLIP12.33□□□□□ -0.44
SDCBP-203ENST00000424270 TOPBP1Q92547 1522 aa12.28□□□□□ -0.44
SDCBP-203ENST00000424270 CHMP7Q8WUX9 453 aaPredicted RBP12.27□□□□□ -0.45
SDCBP-203ENST00000424270 ABCC8Q09428 1581 aa12.23□□□□□ -0.45
SDCBP-203ENST00000424270 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
SDCBP-203ENST00000424270 GAPVD1Q14C86 1478 aa12.21□□□□□ -0.46
SDCBP-203ENST00000424270 PRDM2Q13029 1718 aa12.2□□□□□ -0.46
SDCBP-203ENST00000424270 CLASP1Q7Z460 1538 aa12.2□□□□□ -0.46
SDCBP-203ENST00000424270 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
SDCBP-203ENST00000424270 DNMBPQ6XZF7 1577 aa12.18□□□□□ -0.46
SDCBP-203ENST00000424270 TDRD9Q8NDG6 1382 aaKnown RBP12.18□□□□□ -0.46
SDCBP-203ENST00000424270 TOP2AP11388 1531 aaKnown RBP12.17□□□□□ -0.46
SDCBP-203ENST00000424270 TARBP1Q13395 1621 aaKnown RBP12.16□□□□□ -0.46
SDCBP-203ENST00000424270 RAD54L2Q9Y4B4 1467 aa12.12□□□□□ -0.47
SDCBP-203ENST00000424270 POLA1P09884 1462 aaPredicted RBP12.11□□□□□ -0.47
SDCBP-203ENST00000424270 KDM4FA0A1W2PPD8 638 aa12.11□□□□□ -0.47
SDCBP-203ENST00000424270 SOGA1O94964 1423 aa12.11□□□□□ -0.47
SDCBP-203ENST00000424270 FOXD1Q16676 465 aa12.1□□□□□ -0.47
SDCBP-203ENST00000424270 MAGI1Q96QZ7 1491 aaPredicted RBP12.09□□□□□ -0.47
SDCBP-203ENST00000424270 SYNJ2O15056 1496 aa12.08□□□□□ -0.48
SDCBP-203ENST00000424270 FAM69CQ0P6D2 419 aa12.05□□□□□ -0.48
SDCBP-203ENST00000424270 CCDC88BA6NC98 1476 aa12.05□□□□□ -0.48
SDCBP-203ENST00000424270 GRIN2BQ13224 1484 aa12.05□□□□□ -0.48
SDCBP-203ENST00000424270 NPM1P06748 294 aaKnown RBP eCLIP12.02□□□□□ -0.49
SDCBP-203ENST00000424270 WDR97A6NE52 1622 aa12□□□□□ -0.49
SDCBP-203ENST00000424270 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
SDCBP-203ENST00000424270 ERCC6L2Q5T890 1561 aa11.99□□□□□ -0.49
SDCBP-203ENST00000424270 KDM6BO15054 1643 aa11.99□□□□□ -0.49
SDCBP-203ENST00000424270 FGD5Q6ZNL6 1462 aa11.98□□□□□ -0.49
SDCBP-203ENST00000424270 FBXO41Q8TF61 875 aa11.94□□□□□ -0.5
SDCBP-203ENST00000424270 CEP170Q5SW79 1584 aa11.93□□□□□ -0.5
SDCBP-203ENST00000424270 HECW2Q9P2P5 1572 aa11.93□□□□□ -0.5
SDCBP-203ENST00000424270 PBRM1Q86U86 1689 aa11.92□□□□□ -0.5
SDCBP-203ENST00000424270 ABCC10Q5T3U5 1492 aa11.92□□□□□ -0.5
SDCBP-203ENST00000424270 ADGRL1O94910 1474 aa11.9□□□□□ -0.5
SDCBP-203ENST00000424270 GRIN2AQ12879 1464 aa11.89□□□□□ -0.51
SDCBP-203ENST00000424270 LMTK3Q96Q04 1460 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms