RNA–Protein interactions for RNA: ENST00000423251.1

MCF2L-214, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 734 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-214ENST00000423251 NISCHQ9Y2I1 1504 aa44.94■■■■■ 4.78
MCF2L-214ENST00000423251 ABCC9O60706 1549 aa40.27■■■■■ 4.04
MCF2L-214ENST00000423251 CCDC180Q9P1Z9 1646 aa40.24■■■■■ 4.03
MCF2L-214ENST00000423251 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
MCF2L-214ENST00000423251 NACADO15069 1562 aa37.99■■■■□ 3.67
MCF2L-214ENST00000423251 DCAF8L2P0C7V8 631 aa37.75■■■■□ 3.63
MCF2L-214ENST00000423251 DNAJC5BQ9UF47 199 aa37.74■■■■□ 3.63
MCF2L-214ENST00000423251 UNC13AQ9UPW8 1703 aa37.52■■■■□ 3.6
MCF2L-214ENST00000423251 ZCCHC6Q5VYS8 1495 aaKnown RBP37.45■■■■□ 3.59
MCF2L-214ENST00000423251 PABPN1Q86U42 306 aaKnown RBP eCLIP37.43■■■■□ 3.58
MCF2L-214ENST00000423251 MYO15BQ96JP2 1530 aa37.42■■■■□ 3.58
MCF2L-214ENST00000423251 DCAF1Q9Y4B6 1507 aa37.21■■■■□ 3.55
MCF2L-214ENST00000423251 BICRAQ9NZM4 1560 aa37.2■■■■□ 3.55
MCF2L-214ENST00000423251 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
MCF2L-214ENST00000423251 SHROOM4Q9ULL8 1493 aa36.62■■■■□ 3.45
MCF2L-214ENST00000423251 CC2D2AQ9P2K1 1620 aa36.38■■■■□ 3.41
MCF2L-214ENST00000423251 EIF4G1Q04637 1599 aaKnown RBP36.29■■■■□ 3.4
MCF2L-214ENST00000423251 CECR2Q9BXF3 1484 aa36.25■■■■□ 3.39
MCF2L-214ENST00000423251 NCAPD3P42695 1498 aa35.04■■■■□ 3.2
MCF2L-214ENST00000423251 ATAD2BQ9ULI0 1458 aa34.97■■■■□ 3.19
MCF2L-214ENST00000423251 SMARCA4P51532 1647 aa34.97■■■■□ 3.19
MCF2L-214ENST00000423251 SMARCA2P51531 1590 aa34.87■■■■□ 3.17
MCF2L-214ENST00000423251 HMGXB3Q12766 1538 aa34.84■■■■□ 3.17
MCF2L-214ENST00000423251 BAZ1AQ9NRL2 1556 aaPredicted RBP34.8■■■■□ 3.16
MCF2L-214ENST00000423251 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
MCF2L-214ENST00000423251 CUX2O14529 1486 aa34.68■■■■□ 3.14
MCF2L-214ENST00000423251 BAZ1BQ9UIG0 1483 aaKnown RBP34.65■■■■□ 3.14
MCF2L-214ENST00000423251 DNAJC5Q9H3Z4 198 aa34.64■■■■□ 3.14
MCF2L-214ENST00000423251 MROH2BQ7Z745 1585 aa34.62■■■■□ 3.13
MCF2L-214ENST00000423251 PEG3Q9GZU2 1588 aa34.59■■■■□ 3.13
MCF2L-214ENST00000423251 NESP48681 1621 aa34.59■■■■□ 3.13
MCF2L-214ENST00000423251 RSF1Q96T23 1441 aaPredicted RBP34.35■■■■□ 3.09
MCF2L-214ENST00000423251 LAMC3Q9Y6N6 1575 aa34.31■■■■□ 3.08
MCF2L-214ENST00000423251 THOC2Q8NI27 1593 aaKnown RBP34.28■■■■□ 3.08
MCF2L-214ENST00000423251 WIZO95785 1651 aa34.22■■■■□ 3.07
MCF2L-214ENST00000423251 KIF21AQ7Z4S6 1674 aa34.19■■■■□ 3.06
MCF2L-214ENST00000423251 PDS5BQ9NTI5 1447 aa34.06■■■■□ 3.04
MCF2L-214ENST00000423251 CADPSQ9ULU8 1353 aa33.98■■■■□ 3.03
MCF2L-214ENST00000423251 TOP2AP11388 1531 aaKnown RBP33.89■■■■□ 3.02
MCF2L-214ENST00000423251 MRC2Q9UBG0 1479 aa33.82■■■■□ 3.01
MCF2L-214ENST00000423251 WDR62O43379 1518 aa33.76■■■■□ 3
MCF2L-214ENST00000423251 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
MCF2L-214ENST00000423251 SUPT5HO00267 1087 aaKnown RBP33.68■■■□□ 2.98
MCF2L-214ENST00000423251 FANCD2Q9BXW9 1451 aa33.64■■■□□ 2.98
MCF2L-214ENST00000423251 CFTRP13569 1480 aa33.6■■■□□ 2.97
MCF2L-214ENST00000423251 CCDC88BA6NC98 1476 aa33.54■■■□□ 2.96
MCF2L-214ENST00000423251 URB2Q14146 1524 aaKnown RBP33.38■■■□□ 2.93
MCF2L-214ENST00000423251 PRDM2Q13029 1718 aa33.38■■■□□ 2.93
MCF2L-214ENST00000423251 TRIM41Q8WV44 630 aa33.18■■■□□ 2.9
MCF2L-214ENST00000423251 TOPBP1Q92547 1522 aa33.02■■■□□ 2.88
MCF2L-214ENST00000423251 OSCARQ8IYS5 282 aa33.01■■■□□ 2.87
MCF2L-214ENST00000423251 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
MCF2L-214ENST00000423251 ZNF608Q9ULD9 1512 aaPredicted RBP32.98■■■□□ 2.87
MCF2L-214ENST00000423251 DNMBPQ6XZF7 1577 aa32.9■■■□□ 2.86
MCF2L-214ENST00000423251 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
MCF2L-214ENST00000423251 EIF4G3O43432 1585 aaKnown RBP32.84■■■□□ 2.85
MCF2L-214ENST00000423251 TARBP1Q13395 1621 aaKnown RBP32.73■■■□□ 2.83
MCF2L-214ENST00000423251 RIMBP3CA6NJZ7 1639 aa32.73■■■□□ 2.83
MCF2L-214ENST00000423251 RIMBP3BA6NNM3 1639 aa32.73■■■□□ 2.83
MCF2L-214ENST00000423251 RIMBP3Q9UFD9 1639 aa32.73■■■□□ 2.83
MCF2L-214ENST00000423251 POLA1P09884 1462 aaPredicted RBP32.67■■■□□ 2.82
MCF2L-214ENST00000423251 AQRO60306 1485 aaKnown RBP eCLIP32.65■■■□□ 2.82
MCF2L-214ENST00000423251 CHD1O14646 1710 aa32.63■■■□□ 2.81
MCF2L-214ENST00000423251 ARHGEF11O15085 1522 aa32.6■■■□□ 2.81
MCF2L-214ENST00000423251 RAD54L2Q9Y4B4 1467 aa32.55■■■□□ 2.8
MCF2L-214ENST00000423251 FGD5Q6ZNL6 1462 aa32.48■■■□□ 2.79
MCF2L-214ENST00000423251 SOGA1O94964 1423 aa32.47■■■□□ 2.79
MCF2L-214ENST00000423251 CUX1P39880 1505 aa32.46■■■□□ 2.79
MCF2L-214ENST00000423251 TDRD9Q8NDG6 1382 aaKnown RBP32.43■■■□□ 2.78
MCF2L-214ENST00000423251 FBLN2P98095 1184 aa32.41■■■□□ 2.78
MCF2L-214ENST00000423251 WRNQ14191 1432 aaPredicted RBP eCLIP32.37■■■□□ 2.77
MCF2L-214ENST00000423251 WDR97A6NE52 1622 aa32.37■■■□□ 2.77
MCF2L-214ENST00000423251 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
MCF2L-214ENST00000423251 ARAP1Q96P48 1450 aa32.29■■■□□ 2.76
MCF2L-214ENST00000423251 CYB5RLQ6IPT4 315 aa32.28■■■□□ 2.76
MCF2L-214ENST00000423251 TOP2BQ02880 1626 aa32.24■■■□□ 2.75
MCF2L-214ENST00000423251 MAGI1Q96QZ7 1491 aaPredicted RBP32.23■■■□□ 2.75
MCF2L-214ENST00000423251 GRIN2BQ13224 1484 aa32.22■■■□□ 2.75
MCF2L-214ENST00000423251 SYNJ1O43426 1573 aa32.21■■■□□ 2.75
MCF2L-214ENST00000423251 BIVM-ERCC5R4GMW8 1640 aa32.21■■■□□ 2.75
MCF2L-214ENST00000423251 CLASP1Q7Z460 1538 aa32.21■■■□□ 2.75
MCF2L-214ENST00000423251 PBRM1Q86U86 1689 aa32.19■■■□□ 2.74
MCF2L-214ENST00000423251 CHMP7Q8WUX9 453 aaPredicted RBP32.14■■■□□ 2.74
MCF2L-214ENST00000423251 SYNJ2O15056 1496 aa32.12■■■□□ 2.73
MCF2L-214ENST00000423251 GAPVD1Q14C86 1478 aa32.1■■■□□ 2.73
MCF2L-214ENST00000423251 ABCA5Q8WWZ7 1642 aa32.08■■■□□ 2.73
MCF2L-214ENST00000423251 ABCA10Q8WWZ4 1543 aa32.07■■■□□ 2.72
MCF2L-214ENST00000423251 TRHP20396 242 aaPredicted RBP31.94■■■□□ 2.7
MCF2L-214ENST00000423251 ADAMTS12P58397 1594 aa31.85■■■□□ 2.69
MCF2L-214ENST00000423251 GRIN2AQ12879 1464 aa31.83■■■□□ 2.69
MCF2L-214ENST00000423251 CEP170Q5SW79 1584 aa31.75■■■□□ 2.67
MCF2L-214ENST00000423251 ERCC6L2Q5T890 1561 aa31.73■■■□□ 2.67
MCF2L-214ENST00000423251 NUP160Q12769 1436 aa31.71■■■□□ 2.67
MCF2L-214ENST00000423251 KIF27Q86VH2 1401 aa31.7■■■□□ 2.67
MCF2L-214ENST00000423251 FHAD1B1AJZ9 1412 aa31.68■■■□□ 2.66
MCF2L-214ENST00000423251 ERICH3Q5RHP9 1530 aa31.67■■■□□ 2.66
MCF2L-214ENST00000423251 CHIC1Q5VXU3 224 aa31.61■■■□□ 2.65
MCF2L-214ENST00000423251 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
MCF2L-214ENST00000423251 IGF1RP08069 1367 aa31.57■■■□□ 2.64
MCF2L-214ENST00000423251 RUSC2Q8N2Y8 1516 aa31.44■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms