RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 NISCHQ9Y2I1 1504 aa22.06■■□□□ 1.12
PDGFC-202ENST00000422544 ABCC9O60706 1549 aa19.74■□□□□ 0.75
PDGFC-202ENST00000422544 CCDC180Q9P1Z9 1646 aa19.41■□□□□ 0.7
PDGFC-202ENST00000422544 DNAJC5BQ9UF47 199 aa19.06■□□□□ 0.64
PDGFC-202ENST00000422544 AEBP2Q6ZN18 517 aaPredicted RBP18.83■□□□□ 0.6
PDGFC-202ENST00000422544 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
PDGFC-202ENST00000422544 DCAF8L2P0C7V8 631 aa18.52■□□□□ 0.56
PDGFC-202ENST00000422544 UNC13AQ9UPW8 1703 aa18.46■□□□□ 0.55
PDGFC-202ENST00000422544 ZCCHC6Q5VYS8 1495 aaKnown RBP18.39■□□□□ 0.54
PDGFC-202ENST00000422544 CHIC1Q5VXU3 224 aa18.35■□□□□ 0.53
PDGFC-202ENST00000422544 NACADO15069 1562 aa18.34■□□□□ 0.53
PDGFC-202ENST00000422544 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
PDGFC-202ENST00000422544 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
PDGFC-202ENST00000422544 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
PDGFC-202ENST00000422544 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
PDGFC-202ENST00000422544 CC2D2AQ9P2K1 1620 aa17.88■□□□□ 0.45
PDGFC-202ENST00000422544 SCRIBQ14160 1630 aa17.83■□□□□ 0.44
PDGFC-202ENST00000422544 CECR2Q9BXF3 1484 aa17.79■□□□□ 0.44
PDGFC-202ENST00000422544 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
PDGFC-202ENST00000422544 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
PDGFC-202ENST00000422544 DNAJC5Q9H3Z4 198 aa17.63■□□□□ 0.41
PDGFC-202ENST00000422544 CUX2O14529 1486 aa17.12■□□□□ 0.33
PDGFC-202ENST00000422544 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
PDGFC-202ENST00000422544 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
PDGFC-202ENST00000422544 MROH2BQ7Z745 1585 aa17.02■□□□□ 0.32
PDGFC-202ENST00000422544 NCAPD3P42695 1498 aa16.97■□□□□ 0.31
PDGFC-202ENST00000422544 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
PDGFC-202ENST00000422544 NESP48681 1621 aa16.93■□□□□ 0.3
PDGFC-202ENST00000422544 RSF1Q96T23 1441 aaPredicted RBP16.92■□□□□ 0.3
PDGFC-202ENST00000422544 ERCC6Q03468 1493 aa16.92■□□□□ 0.3
PDGFC-202ENST00000422544 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
PDGFC-202ENST00000422544 THOC2Q8NI27 1593 aaKnown RBP16.88■□□□□ 0.29
PDGFC-202ENST00000422544 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
PDGFC-202ENST00000422544 WIZO95785 1651 aa16.81■□□□□ 0.28
PDGFC-202ENST00000422544 HMGXB3Q12766 1538 aa16.81■□□□□ 0.28
PDGFC-202ENST00000422544 BAZ1BQ9UIG0 1483 aaKnown RBP16.81■□□□□ 0.28
PDGFC-202ENST00000422544 KIF21AQ7Z4S6 1674 aa16.75■□□□□ 0.27
PDGFC-202ENST00000422544 SUPT5HO00267 1087 aaKnown RBP16.72■□□□□ 0.27
PDGFC-202ENST00000422544 TOP2AP11388 1531 aaKnown RBP16.64■□□□□ 0.25
PDGFC-202ENST00000422544 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
PDGFC-202ENST00000422544 TRIM41Q8WV44 630 aa16.57■□□□□ 0.24
PDGFC-202ENST00000422544 CCDC88BA6NC98 1476 aa16.51■□□□□ 0.23
PDGFC-202ENST00000422544 CADPSQ9ULU8 1353 aa16.47■□□□□ 0.23
PDGFC-202ENST00000422544 WDR62O43379 1518 aa16.46■□□□□ 0.23
PDGFC-202ENST00000422544 PDS5BQ9NTI5 1447 aa16.43■□□□□ 0.22
PDGFC-202ENST00000422544 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
PDGFC-202ENST00000422544 CFTRP13569 1480 aa16.37■□□□□ 0.21
PDGFC-202ENST00000422544 FANCD2Q9BXW9 1451 aa16.25■□□□□ 0.19
PDGFC-202ENST00000422544 RIMBP3CA6NJZ7 1639 aa16.24■□□□□ 0.19
PDGFC-202ENST00000422544 RIMBP3BA6NNM3 1639 aa16.24■□□□□ 0.19
PDGFC-202ENST00000422544 RIMBP3Q9UFD9 1639 aa16.24■□□□□ 0.19
PDGFC-202ENST00000422544 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
PDGFC-202ENST00000422544 URB2Q14146 1524 aaKnown RBP16.22■□□□□ 0.19
PDGFC-202ENST00000422544 OSCARQ8IYS5 282 aa16.17■□□□□ 0.18
PDGFC-202ENST00000422544 PRDM2Q13029 1718 aa16.1■□□□□ 0.17
PDGFC-202ENST00000422544 SENP3Q9H4L4 574 aaPredicted RBP16.09■□□□□ 0.17
PDGFC-202ENST00000422544 ARHGEF11O15085 1522 aa16.09■□□□□ 0.17
PDGFC-202ENST00000422544 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
PDGFC-202ENST00000422544 PHF23Q9BUL5 403 aaPredicted RBP16.08■□□□□ 0.16
PDGFC-202ENST00000422544 TOPBP1Q92547 1522 aa16■□□□□ 0.15
PDGFC-202ENST00000422544 ABCC8Q09428 1581 aa16■□□□□ 0.15
PDGFC-202ENST00000422544 CHD1O14646 1710 aa15.99■□□□□ 0.15
PDGFC-202ENST00000422544 DNMBPQ6XZF7 1577 aa15.96■□□□□ 0.15
PDGFC-202ENST00000422544 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.14
PDGFC-202ENST00000422544 CUX1P39880 1505 aa15.95■□□□□ 0.14
PDGFC-202ENST00000422544 ARAP1Q96P48 1450 aa15.94■□□□□ 0.14
PDGFC-202ENST00000422544 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
PDGFC-202ENST00000422544 IFT140Q96RY7 1462 aa15.92■□□□□ 0.14
PDGFC-202ENST00000422544 TARBP1Q13395 1621 aaKnown RBP15.9■□□□□ 0.14
PDGFC-202ENST00000422544 POLA1P09884 1462 aaPredicted RBP15.88■□□□□ 0.13
PDGFC-202ENST00000422544 FGD5Q6ZNL6 1462 aa15.87■□□□□ 0.13
PDGFC-202ENST00000422544 SOGA1O94964 1423 aa15.86■□□□□ 0.13
PDGFC-202ENST00000422544 CYB5RLQ6IPT4 315 aa15.86■□□□□ 0.13
PDGFC-202ENST00000422544 RAD54L2Q9Y4B4 1467 aa15.85■□□□□ 0.13
PDGFC-202ENST00000422544 SYNJ1O43426 1573 aa15.84■□□□□ 0.13
PDGFC-202ENST00000422544 AQRO60306 1485 aaKnown RBP eCLIP15.82■□□□□ 0.12
PDGFC-202ENST00000422544 TOP2BQ02880 1626 aa15.82■□□□□ 0.12
PDGFC-202ENST00000422544 TDRD9Q8NDG6 1382 aaKnown RBP15.78■□□□□ 0.12
PDGFC-202ENST00000422544 BIVM-ERCC5R4GMW8 1640 aa15.78■□□□□ 0.12
PDGFC-202ENST00000422544 CLASP1Q7Z460 1538 aa15.75■□□□□ 0.11
PDGFC-202ENST00000422544 ABCA10Q8WWZ4 1543 aa15.72■□□□□ 0.11
PDGFC-202ENST00000422544 TRHP20396 242 aaPredicted RBP15.71■□□□□ 0.11
PDGFC-202ENST00000422544 GAPVD1Q14C86 1478 aa15.65■□□□□ 0.1
PDGFC-202ENST00000422544 WDR97A6NE52 1622 aa15.62■□□□□ 0.09
PDGFC-202ENST00000422544 GRIN2BQ13224 1484 aa15.62■□□□□ 0.09
PDGFC-202ENST00000422544 SNAPC4Q5SXM2 1469 aa15.62■□□□□ 0.09
PDGFC-202ENST00000422544 KIF27Q86VH2 1401 aa15.6■□□□□ 0.09
PDGFC-202ENST00000422544 FBLN2P98095 1184 aa15.59■□□□□ 0.09
PDGFC-202ENST00000422544 ABCA5Q8WWZ7 1642 aa15.58■□□□□ 0.09
PDGFC-202ENST00000422544 ERCC6L2Q5T890 1561 aa15.55■□□□□ 0.08
PDGFC-202ENST00000422544 IGF1RP08069 1367 aa15.55■□□□□ 0.08
PDGFC-202ENST00000422544 CHMP7Q8WUX9 453 aaPredicted RBP15.55■□□□□ 0.08
PDGFC-202ENST00000422544 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
PDGFC-202ENST00000422544 PBRM1Q86U86 1689 aa15.54■□□□□ 0.08
PDGFC-202ENST00000422544 MAGI1Q96QZ7 1491 aaPredicted RBP15.53■□□□□ 0.08
PDGFC-202ENST00000422544 KIF13AQ9H1H9 1805 aa15.5■□□□□ 0.07
PDGFC-202ENST00000422544 ERICH3Q5RHP9 1530 aa15.5■□□□□ 0.07
PDGFC-202ENST00000422544 SYNJ2O15056 1496 aa15.49■□□□□ 0.07
PDGFC-202ENST00000422544 FHAD1B1AJZ9 1412 aa15.48■□□□□ 0.07
PDGFC-202ENST00000422544 FAM9AQ8IZU1 332 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms