RNA–Protein interactions for RNA: ENST00000422489.1

NUP50-206, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 543 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-206ENST00000422489 NISCHQ9Y2I1 1504 aa22.71■■□□□ 1.23
NUP50-206ENST00000422489 ABCC9O60706 1549 aa20.24■□□□□ 0.83
NUP50-206ENST00000422489 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
NUP50-206ENST00000422489 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
NUP50-206ENST00000422489 RB1CC1Q8TDY2 1594 aa19.23■□□□□ 0.67
NUP50-206ENST00000422489 NACADO15069 1562 aa19.12■□□□□ 0.65
NUP50-206ENST00000422489 AEBP2Q6ZN18 517 aaPredicted RBP19.01■□□□□ 0.63
NUP50-206ENST00000422489 PABPN1Q86U42 306 aaKnown RBP eCLIP18.98■□□□□ 0.63
NUP50-206ENST00000422489 DNAJC5BQ9UF47 199 aa18.9■□□□□ 0.62
NUP50-206ENST00000422489 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
NUP50-206ENST00000422489 ZCCHC6Q5VYS8 1495 aaKnown RBP18.81■□□□□ 0.6
NUP50-206ENST00000422489 DCAF1Q9Y4B6 1507 aa18.69■□□□□ 0.58
NUP50-206ENST00000422489 UNC13AQ9UPW8 1703 aa18.64■□□□□ 0.57
NUP50-206ENST00000422489 BICRAQ9NZM4 1560 aa18.63■□□□□ 0.57
NUP50-206ENST00000422489 SCRIBQ14160 1630 aa18.52■□□□□ 0.56
NUP50-206ENST00000422489 SHROOM4Q9ULL8 1493 aa18.35■□□□□ 0.53
NUP50-206ENST00000422489 CHIC1Q5VXU3 224 aa18.19■□□□□ 0.5
NUP50-206ENST00000422489 CC2D2AQ9P2K1 1620 aa18.19■□□□□ 0.5
NUP50-206ENST00000422489 CECR2Q9BXF3 1484 aa18.19■□□□□ 0.5
NUP50-206ENST00000422489 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
NUP50-206ENST00000422489 NCAPD3P42695 1498 aa17.7■□□□□ 0.42
NUP50-206ENST00000422489 ATAD2BQ9ULI0 1458 aa17.69■□□□□ 0.42
NUP50-206ENST00000422489 SMARCA4P51532 1647 aa17.63■□□□□ 0.41
NUP50-206ENST00000422489 BAZ1AQ9NRL2 1556 aaPredicted RBP17.61■□□□□ 0.41
NUP50-206ENST00000422489 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
NUP50-206ENST00000422489 MROH2BQ7Z745 1585 aa17.53■□□□□ 0.4
NUP50-206ENST00000422489 BAZ1BQ9UIG0 1483 aaKnown RBP17.52■□□□□ 0.4
NUP50-206ENST00000422489 HMGXB3Q12766 1538 aa17.5■□□□□ 0.39
NUP50-206ENST00000422489 ERCC6Q03468 1493 aa17.47■□□□□ 0.39
NUP50-206ENST00000422489 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
NUP50-206ENST00000422489 NESP48681 1621 aa17.4■□□□□ 0.38
NUP50-206ENST00000422489 CUX2O14529 1486 aa17.29■□□□□ 0.36
NUP50-206ENST00000422489 WIZO95785 1651 aa17.29■□□□□ 0.36
NUP50-206ENST00000422489 RSF1Q96T23 1441 aaPredicted RBP17.25■□□□□ 0.35
NUP50-206ENST00000422489 DNAJC5Q9H3Z4 198 aa17.23■□□□□ 0.35
NUP50-206ENST00000422489 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
NUP50-206ENST00000422489 PDS5BQ9NTI5 1447 aa17.22■□□□□ 0.35
NUP50-206ENST00000422489 LAMC3Q9Y6N6 1575 aa17.22■□□□□ 0.35
NUP50-206ENST00000422489 TOP2AP11388 1531 aaKnown RBP17.07■□□□□ 0.32
NUP50-206ENST00000422489 KIF21AQ7Z4S6 1674 aa17.06■□□□□ 0.32
NUP50-206ENST00000422489 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
NUP50-206ENST00000422489 MRC2Q9UBG0 1479 aa17.01■□□□□ 0.31
NUP50-206ENST00000422489 CFTRP13569 1480 aa17■□□□□ 0.31
NUP50-206ENST00000422489 FANCD2Q9BXW9 1451 aa17■□□□□ 0.31
NUP50-206ENST00000422489 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
NUP50-206ENST00000422489 CCDC88BA6NC98 1476 aa16.96■□□□□ 0.31
NUP50-206ENST00000422489 WDR62O43379 1518 aa16.91■□□□□ 0.3
NUP50-206ENST00000422489 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.28
NUP50-206ENST00000422489 SUPT5HO00267 1087 aaKnown RBP16.82■□□□□ 0.28
NUP50-206ENST00000422489 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
NUP50-206ENST00000422489 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
NUP50-206ENST00000422489 ABCC8Q09428 1581 aa16.65■□□□□ 0.26
NUP50-206ENST00000422489 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
NUP50-206ENST00000422489 TRIM41Q8WV44 630 aa16.64■□□□□ 0.25
NUP50-206ENST00000422489 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
NUP50-206ENST00000422489 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
NUP50-206ENST00000422489 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
NUP50-206ENST00000422489 AQRO60306 1485 aaKnown RBP eCLIP16.54■□□□□ 0.246e-6■□□□□ 8.5
NUP50-206ENST00000422489 FBLN2P98095 1184 aa16.54■□□□□ 0.24
NUP50-206ENST00000422489 SOGA1O94964 1423 aa16.53■□□□□ 0.24
NUP50-206ENST00000422489 POLA1P09884 1462 aaPredicted RBP16.52■□□□□ 0.23
NUP50-206ENST00000422489 RAD54L2Q9Y4B4 1467 aa16.52■□□□□ 0.23
NUP50-206ENST00000422489 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
NUP50-206ENST00000422489 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
NUP50-206ENST00000422489 FGD5Q6ZNL6 1462 aa16.45■□□□□ 0.22
NUP50-206ENST00000422489 TARBP1Q13395 1621 aaKnown RBP16.45■□□□□ 0.22
NUP50-206ENST00000422489 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
NUP50-206ENST00000422489 CUX1P39880 1505 aa16.44■□□□□ 0.22
NUP50-206ENST00000422489 CHMP7Q8WUX9 453 aaPredicted RBP16.4■□□□□ 0.22
NUP50-206ENST00000422489 CYB5RLQ6IPT4 315 aa16.33■□□□□ 0.2
NUP50-206ENST00000422489 SNAPC4Q5SXM2 1469 aa16.33■□□□□ 0.2
NUP50-206ENST00000422489 GRIN2BQ13224 1484 aa16.31■□□□□ 0.2
NUP50-206ENST00000422489 WRNQ14191 1432 aaPredicted RBP eCLIP16.28■□□□□ 0.2
NUP50-206ENST00000422489 RIMBP3CA6NJZ7 1639 aa16.28■□□□□ 0.2
NUP50-206ENST00000422489 RIMBP3BA6NNM3 1639 aa16.28■□□□□ 0.2
NUP50-206ENST00000422489 RIMBP3Q9UFD9 1639 aa16.28■□□□□ 0.2
NUP50-206ENST00000422489 ARHGEF11O15085 1522 aa16.28■□□□□ 0.2
NUP50-206ENST00000422489 GAPVD1Q14C86 1478 aa16.28■□□□□ 0.2
NUP50-206ENST00000422489 CHD1O14646 1710 aa16.26■□□□□ 0.19
NUP50-206ENST00000422489 MAGI1Q96QZ7 1491 aaPredicted RBP16.25■□□□□ 0.19
NUP50-206ENST00000422489 ABCA10Q8WWZ4 1543 aa16.24■□□□□ 0.19
NUP50-206ENST00000422489 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
NUP50-206ENST00000422489 SYNJ2O15056 1496 aa16.22■□□□□ 0.19
NUP50-206ENST00000422489 SYNJ1O43426 1573 aa16.18■□□□□ 0.18
NUP50-206ENST00000422489 TOP2BQ02880 1626 aa16.18■□□□□ 0.18
NUP50-206ENST00000422489 TRHP20396 242 aaPredicted RBP16.14■□□□□ 0.17
NUP50-206ENST00000422489 BIVM-ERCC5R4GMW8 1640 aa16.14■□□□□ 0.17
NUP50-206ENST00000422489 ABCA5Q8WWZ7 1642 aa16.13■□□□□ 0.17
NUP50-206ENST00000422489 ARAP1Q96P48 1450 aa16.13■□□□□ 0.17
NUP50-206ENST00000422489 PBRM1Q86U86 1689 aa16.12■□□□□ 0.17
NUP50-206ENST00000422489 CLASP1Q7Z460 1538 aa16.11■□□□□ 0.17
NUP50-206ENST00000422489 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
NUP50-206ENST00000422489 FHAD1B1AJZ9 1412 aa16.09■□□□□ 0.17
NUP50-206ENST00000422489 GRIN2AQ12879 1464 aa16.07■□□□□ 0.16
NUP50-206ENST00000422489 ERICH3Q5RHP9 1530 aa16.03■□□□□ 0.16
NUP50-206ENST00000422489 ADAMTS12P58397 1594 aa16.02■□□□□ 0.16
NUP50-206ENST00000422489 NUP160Q12769 1436 aa16■□□□□ 0.15
NUP50-206ENST00000422489 JPH4Q96JJ6 628 aa15.99■□□□□ 0.15
NUP50-206ENST00000422489 KIF27Q86VH2 1401 aa15.98■□□□□ 0.15
NUP50-206ENST00000422489 IGF1RP08069 1367 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms