RNA–Protein interactions for RNA: ENST00000421722.5

PMS1-208, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2

Gene PMS1, Length 2,285 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-208ENST00000421722 NISCHQ9Y2I1 1504 aa17.22■□□□□ 0.35
PMS1-208ENST00000421722 ABCC9O60706 1549 aa15.84■□□□□ 0.13
PMS1-208ENST00000421722 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
PMS1-208ENST00000421722 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
PMS1-208ENST00000421722 RB1CC1Q8TDY2 1594 aa15.05■□□□□ -0
PMS1-208ENST00000421722 NACADO15069 1562 aa14.89□□□□□ -0.03
PMS1-208ENST00000421722 PABPN1Q86U42 306 aaKnown RBP eCLIP14.64□□□□□ -0.07
PMS1-208ENST00000421722 UNC13AQ9UPW8 1703 aa14.64□□□□□ -0.07
PMS1-208ENST00000421722 MYO15BQ96JP2 1530 aa14.63□□□□□ -0.07
PMS1-208ENST00000421722 BICRAQ9NZM4 1560 aa14.58□□□□□ -0.08
PMS1-208ENST00000421722 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
PMS1-208ENST00000421722 DCAF8L2P0C7V8 631 aa14.49□□□□□ -0.09
PMS1-208ENST00000421722 CECR2Q9BXF3 1484 aa14.35□□□□□ -0.11
PMS1-208ENST00000421722 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
PMS1-208ENST00000421722 DCAF1Q9Y4B6 1507 aa14.3□□□□□ -0.12
PMS1-208ENST00000421722 EIF4G1Q04637 1599 aaKnown RBP14.24□□□□□ -0.13
PMS1-208ENST00000421722 DNAJC5Q9H3Z4 198 aa14.24□□□□□ -0.13
PMS1-208ENST00000421722 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
PMS1-208ENST00000421722 SCRIBQ14160 1630 aa14.11□□□□□ -0.15
PMS1-208ENST00000421722 CUX2O14529 1486 aa13.93□□□□□ -0.18
PMS1-208ENST00000421722 ERCC6Q03468 1493 aa13.73□□□□□ -0.21
PMS1-208ENST00000421722 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
PMS1-208ENST00000421722 HMGXB3Q12766 1538 aa13.61□□□□□ -0.23
PMS1-208ENST00000421722 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
PMS1-208ENST00000421722 SMARCA2P51531 1590 aa13.58□□□□□ -0.23
PMS1-208ENST00000421722 THOC2Q8NI27 1593 aaKnown RBP13.52□□□□□ -0.25
PMS1-208ENST00000421722 SMARCA4P51532 1647 aa13.5□□□□□ -0.25
PMS1-208ENST00000421722 NESP48681 1621 aa13.49□□□□□ -0.25
PMS1-208ENST00000421722 LAMC3Q9Y6N6 1575 aa13.47□□□□□ -0.25
PMS1-208ENST00000421722 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
PMS1-208ENST00000421722 PEG3Q9GZU2 1588 aa13.43□□□□□ -0.26
PMS1-208ENST00000421722 BAZ1AQ9NRL2 1556 aaPredicted RBP13.4□□□□□ -0.26
PMS1-208ENST00000421722 PDS5BQ9NTI5 1447 aa13.39□□□□□ -0.27
PMS1-208ENST00000421722 TRIM41Q8WV44 630 aa13.36□□□□□ -0.27
PMS1-208ENST00000421722 KIF21AQ7Z4S6 1674 aa13.35□□□□□ -0.27
PMS1-208ENST00000421722 MRC2Q9UBG0 1479 aa13.3□□□□□ -0.28
PMS1-208ENST00000421722 WDR62O43379 1518 aa13.28□□□□□ -0.28
PMS1-208ENST00000421722 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
PMS1-208ENST00000421722 MROH2BQ7Z745 1585 aa13.21□□□□□ -0.3
PMS1-208ENST00000421722 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
PMS1-208ENST00000421722 CEP164Q9UPV0 1460 aa13.15□□□□□ -0.3
PMS1-208ENST00000421722 FANCD2Q9BXW9 1451 aa13.09□□□□□ -0.31
PMS1-208ENST00000421722 CFTRP13569 1480 aa13.04□□□□□ -0.32
PMS1-208ENST00000421722 RIMBP3CA6NJZ7 1639 aa13.02□□□□□ -0.32
PMS1-208ENST00000421722 RIMBP3BA6NNM3 1639 aa13.02□□□□□ -0.32
PMS1-208ENST00000421722 RIMBP3Q9UFD9 1639 aa13.02□□□□□ -0.32
PMS1-208ENST00000421722 WIZO95785 1651 aa13.01□□□□□ -0.33
PMS1-208ENST00000421722 URB2Q14146 1524 aaKnown RBP12.99□□□□□ -0.33
PMS1-208ENST00000421722 IFT140Q96RY7 1462 aa12.94□□□□□ -0.34
PMS1-208ENST00000421722 ARHGEF11O15085 1522 aa12.94□□□□□ -0.34
PMS1-208ENST00000421722 PRDM2Q13029 1718 aa12.92□□□□□ -0.34
PMS1-208ENST00000421722 TOP2AP11388 1531 aaKnown RBP12.91□□□□□ -0.34
PMS1-208ENST00000421722 ABCC8Q09428 1581 aa12.85□□□□□ -0.35
PMS1-208ENST00000421722 ZNF608Q9ULD9 1512 aaPredicted RBP12.84□□□□□ -0.35
PMS1-208ENST00000421722 RSF1Q96T23 1441 aaPredicted RBP12.83□□□□□ -0.36
PMS1-208ENST00000421722 TOPBP1Q92547 1522 aa12.81□□□□□ -0.36
PMS1-208ENST00000421722 EIF4G3O43432 1585 aaKnown RBP12.8□□□□□ -0.36
PMS1-208ENST00000421722 CYB5RLQ6IPT4 315 aa12.79□□□□□ -0.36
PMS1-208ENST00000421722 ARAP1Q96P48 1450 aa12.79□□□□□ -0.36
PMS1-208ENST00000421722 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
PMS1-208ENST00000421722 CHD1O14646 1710 aa12.76□□□□□ -0.37
PMS1-208ENST00000421722 TRHP20396 242 aaPredicted RBP12.76□□□□□ -0.37
PMS1-208ENST00000421722 TARBP1Q13395 1621 aaKnown RBP12.73□□□□□ -0.37
PMS1-208ENST00000421722 CCDC88BA6NC98 1476 aa12.72□□□□□ -0.37
PMS1-208ENST00000421722 WDR97A6NE52 1622 aa12.7□□□□□ -0.38
PMS1-208ENST00000421722 AEBP2Q6ZN18 517 aaPredicted RBP12.69□□□□□ -0.38
PMS1-208ENST00000421722 AQRO60306 1485 aaKnown RBP eCLIP12.68□□□□□ -0.381e-9■■■■□ 22.4
PMS1-208ENST00000421722 CLASP1Q7Z460 1538 aa12.67□□□□□ -0.38
PMS1-208ENST00000421722 POLA1P09884 1462 aaPredicted RBP12.63□□□□□ -0.39
PMS1-208ENST00000421722 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
PMS1-208ENST00000421722 FBLN2P98095 1184 aa12.62□□□□□ -0.39
PMS1-208ENST00000421722 MAGI1Q96QZ7 1491 aaPredicted RBP12.6□□□□□ -0.39
PMS1-208ENST00000421722 SOGA1O94964 1423 aa12.59□□□□□ -0.39
PMS1-208ENST00000421722 SNAPC4Q5SXM2 1469 aa12.58□□□□□ -0.4
PMS1-208ENST00000421722 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
PMS1-208ENST00000421722 CHIC1Q5VXU3 224 aa12.55□□□□□ -0.4
PMS1-208ENST00000421722 GRIN2BQ13224 1484 aa12.55□□□□□ -0.4
PMS1-208ENST00000421722 CHMP7Q8WUX9 453 aaPredicted RBP12.54□□□□□ -0.4
PMS1-208ENST00000421722 TDRD9Q8NDG6 1382 aaKnown RBP12.54□□□□□ -0.4
PMS1-208ENST00000421722 SYNJ2O15056 1496 aa12.54□□□□□ -0.4
PMS1-208ENST00000421722 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
PMS1-208ENST00000421722 FGD5Q6ZNL6 1462 aa12.5□□□□□ -0.41
PMS1-208ENST00000421722 PBRM1Q86U86 1689 aa12.45□□□□□ -0.42
PMS1-208ENST00000421722 CUX1P39880 1505 aa12.45□□□□□ -0.42
PMS1-208ENST00000421722 ABCA5Q8WWZ7 1642 aa12.4□□□□□ -0.43
PMS1-208ENST00000421722 ABCA10Q8WWZ4 1543 aa12.39□□□□□ -0.43
PMS1-208ENST00000421722 NUP160Q12769 1436 aa12.37□□□□□ -0.43
PMS1-208ENST00000421722 GRIN2AQ12879 1464 aa12.36□□□□□ -0.43
PMS1-208ENST00000421722 SHROOM2Q13796 1616 aa12.36□□□□□ -0.43
PMS1-208ENST00000421722 CEP170Q5SW79 1584 aa12.36□□□□□ -0.43
PMS1-208ENST00000421722 ERCC6L2Q5T890 1561 aa12.34□□□□□ -0.43
PMS1-208ENST00000421722 KIF13AQ9H1H9 1805 aa12.33□□□□□ -0.44
PMS1-208ENST00000421722 ADAMTS12P58397 1594 aa12.33□□□□□ -0.44
PMS1-208ENST00000421722 FHAD1B1AJZ9 1412 aa12.29□□□□□ -0.44
PMS1-208ENST00000421722 ABCC10Q5T3U5 1492 aa12.26□□□□□ -0.45
PMS1-208ENST00000421722 WRNQ14191 1432 aaPredicted RBP eCLIP12.26□□□□□ -0.45
PMS1-208ENST00000421722 ERICH3Q5RHP9 1530 aa12.25□□□□□ -0.45
PMS1-208ENST00000421722 MAPKBP1O60336 1514 aa12.24□□□□□ -0.45
PMS1-208ENST00000421722 PRG4Q92954 1404 aaPredicted RBP12.22□□□□□ -0.45
PMS1-208ENST00000421722 BIVM-ERCC5R4GMW8 1640 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms