RNA–Protein interactions for RNA: ENST00000421368.2

MSL3-208, Transcript of MSL complex subunit 3, humanhuman

TSL 5

Gene MSL3, Length 795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-208ENST00000421368 NISCHQ9Y2I1 1504 aa43.39■■■■■ 4.54
MSL3-208ENST00000421368 CCDC180Q9P1Z9 1646 aa38.63■■■■□ 3.77
MSL3-208ENST00000421368 ABCC9O60706 1549 aa37.69■■■■□ 3.62
MSL3-208ENST00000421368 RB1CC1Q8TDY2 1594 aa36.28■■■■□ 3.4
MSL3-208ENST00000421368 NACADO15069 1562 aa36.24■■■■□ 3.39
MSL3-208ENST00000421368 ZCCHC6Q5VYS8 1495 aaKnown RBP36.17■■■■□ 3.38
MSL3-208ENST00000421368 DCAF8L2P0C7V8 631 aa36.15■■■■□ 3.38
MSL3-208ENST00000421368 MYO15BQ96JP2 1530 aa36.03■■■■□ 3.36
MSL3-208ENST00000421368 DCAF1Q9Y4B6 1507 aa35.9■■■■□ 3.34
MSL3-208ENST00000421368 UNC13AQ9UPW8 1703 aa35.62■■■■□ 3.29
MSL3-208ENST00000421368 BICRAQ9NZM4 1560 aa35.24■■■■□ 3.23
MSL3-208ENST00000421368 SCRIBQ14160 1630 aa35.23■■■■□ 3.23
MSL3-208ENST00000421368 PABPN1Q86U42 306 aaKnown RBP eCLIP35.18■■■■□ 3.22
MSL3-208ENST00000421368 SHROOM4Q9ULL8 1493 aa34.79■■■■□ 3.16
MSL3-208ENST00000421368 DNAJC5BQ9UF47 199 aa34.54■■■■□ 3.12
MSL3-208ENST00000421368 EIF4G1Q04637 1599 aaKnown RBP34.27■■■■□ 3.08
MSL3-208ENST00000421368 CC2D2AQ9P2K1 1620 aa34.13■■■■□ 3.05
MSL3-208ENST00000421368 CECR2Q9BXF3 1484 aa33.84■■■■□ 3.01
MSL3-208ENST00000421368 SMARCA4P51532 1647 aa33.71■■■□□ 2.99
MSL3-208ENST00000421368 BAZ1AQ9NRL2 1556 aaPredicted RBP33.63■■■□□ 2.97
MSL3-208ENST00000421368 MROH2BQ7Z745 1585 aa33.47■■■□□ 2.95
MSL3-208ENST00000421368 ATAD2BQ9ULI0 1458 aa33.45■■■□□ 2.95
MSL3-208ENST00000421368 SMARCA2P51531 1590 aa33.43■■■□□ 2.94
MSL3-208ENST00000421368 NCAPD3P42695 1498 aa33.42■■■□□ 2.94
MSL3-208ENST00000421368 PEG3Q9GZU2 1588 aa33.36■■■□□ 2.93
MSL3-208ENST00000421368 HMGXB3Q12766 1538 aa33.3■■■□□ 2.92
MSL3-208ENST00000421368 BAZ1BQ9UIG0 1483 aaKnown RBP33.18■■■□□ 2.9
MSL3-208ENST00000421368 WIZO95785 1651 aa33.15■■■□□ 2.9
MSL3-208ENST00000421368 RSF1Q96T23 1441 aaPredicted RBP33.06■■■□□ 2.88
MSL3-208ENST00000421368 TOP2AP11388 1531 aaKnown RBP32.75■■■□□ 2.83
MSL3-208ENST00000421368 NESP48681 1621 aa32.66■■■□□ 2.82
MSL3-208ENST00000421368 LAMC3Q9Y6N6 1575 aa32.57■■■□□ 2.8
MSL3-208ENST00000421368 ERCC6Q03468 1493 aa32.45■■■□□ 2.79
MSL3-208ENST00000421368 CADPSQ9ULU8 1353 aa32.43■■■□□ 2.78
MSL3-208ENST00000421368 KIF21AQ7Z4S6 1674 aa32.35■■■□□ 2.77
MSL3-208ENST00000421368 CCDC88BA6NC98 1476 aa32.35■■■□□ 2.77
MSL3-208ENST00000421368 PDS5BQ9NTI5 1447 aa32.28■■■□□ 2.76
MSL3-208ENST00000421368 CFTRP13569 1480 aa32.27■■■□□ 2.76
MSL3-208ENST00000421368 SUPT5HO00267 1087 aaKnown RBP32.21■■■□□ 2.75
MSL3-208ENST00000421368 PRDM2Q13029 1718 aa32.19■■■□□ 2.74
MSL3-208ENST00000421368 THOC2Q8NI27 1593 aaKnown RBP32.19■■■□□ 2.74
MSL3-208ENST00000421368 CUX2O14529 1486 aa32.1■■■□□ 2.73
MSL3-208ENST00000421368 FANCD2Q9BXW9 1451 aa32.09■■■□□ 2.73
MSL3-208ENST00000421368 CEP164Q9UPV0 1460 aa32.04■■■□□ 2.72
MSL3-208ENST00000421368 MRC2Q9UBG0 1479 aa31.99■■■□□ 2.71
MSL3-208ENST00000421368 WDR62O43379 1518 aa31.91■■■□□ 2.7
MSL3-208ENST00000421368 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
MSL3-208ENST00000421368 TOPBP1Q92547 1522 aa31.59■■■□□ 2.65
MSL3-208ENST00000421368 DNMBPQ6XZF7 1577 aa31.58■■■□□ 2.65
MSL3-208ENST00000421368 ABCC8Q09428 1581 aa31.55■■■□□ 2.64
MSL3-208ENST00000421368 CUX1P39880 1505 aa31.39■■■□□ 2.62
MSL3-208ENST00000421368 IFT140Q96RY7 1462 aa31.35■■■□□ 2.61
MSL3-208ENST00000421368 POLA1P09884 1462 aaPredicted RBP31.33■■■□□ 2.61
MSL3-208ENST00000421368 TARBP1Q13395 1621 aaKnown RBP31.29■■■□□ 2.6
MSL3-208ENST00000421368 FGD5Q6ZNL6 1462 aa31.27■■■□□ 2.6
MSL3-208ENST00000421368 ZNF608Q9ULD9 1512 aaPredicted RBP31.25■■■□□ 2.59
MSL3-208ENST00000421368 RAD54L2Q9Y4B4 1467 aa31.2■■■□□ 2.58
MSL3-208ENST00000421368 BIVM-ERCC5R4GMW8 1640 aa31.17■■■□□ 2.58
MSL3-208ENST00000421368 EIF4G3O43432 1585 aaKnown RBP31.17■■■□□ 2.58
MSL3-208ENST00000421368 SOGA1O94964 1423 aa31.16■■■□□ 2.58
MSL3-208ENST00000421368 WRNQ14191 1432 aaPredicted RBP eCLIP31.15■■■□□ 2.58
MSL3-208ENST00000421368 SYNJ1O43426 1573 aa31.15■■■□□ 2.58
MSL3-208ENST00000421368 TOP2BQ02880 1626 aa31.14■■■□□ 2.58
MSL3-208ENST00000421368 WDR97A6NE52 1622 aa31.09■■■□□ 2.57
MSL3-208ENST00000421368 AQRO60306 1485 aaKnown RBP eCLIP31.05■■■□□ 2.56
MSL3-208ENST00000421368 DNAJC5Q9H3Z4 198 aa31.04■■■□□ 2.56
MSL3-208ENST00000421368 TDRD9Q8NDG6 1382 aaKnown RBP30.99■■■□□ 2.55
MSL3-208ENST00000421368 ABCA10Q8WWZ4 1543 aa30.95■■■□□ 2.55
MSL3-208ENST00000421368 ABCA5Q8WWZ7 1642 aa30.87■■■□□ 2.53
MSL3-208ENST00000421368 PBRM1Q86U86 1689 aa30.87■■■□□ 2.53
MSL3-208ENST00000421368 GAPVD1Q14C86 1478 aa30.82■■■□□ 2.53
MSL3-208ENST00000421368 CHD1O14646 1710 aa30.82■■■□□ 2.52
MSL3-208ENST00000421368 GRIN2BQ13224 1484 aa30.81■■■□□ 2.52
MSL3-208ENST00000421368 SNAPC4Q5SXM2 1469 aa30.78■■■□□ 2.52
MSL3-208ENST00000421368 OSCARQ8IYS5 282 aa30.73■■■□□ 2.51
MSL3-208ENST00000421368 MAGI1Q96QZ7 1491 aaPredicted RBP30.73■■■□□ 2.51
MSL3-208ENST00000421368 FBLN2P98095 1184 aa30.62■■■□□ 2.49
MSL3-208ENST00000421368 SYNJ2O15056 1496 aa30.61■■■□□ 2.49
MSL3-208ENST00000421368 ERICH3Q5RHP9 1530 aa30.59■■■□□ 2.49
MSL3-208ENST00000421368 ADAMTS12P58397 1594 aa30.58■■■□□ 2.49
MSL3-208ENST00000421368 CHMP7Q8WUX9 453 aaPredicted RBP30.54■■■□□ 2.48
MSL3-208ENST00000421368 KIF27Q86VH2 1401 aa30.48■■■□□ 2.47
MSL3-208ENST00000421368 FHAD1B1AJZ9 1412 aa30.46■■■□□ 2.47
MSL3-208ENST00000421368 GRIN2AQ12879 1464 aa30.43■■■□□ 2.46
MSL3-208ENST00000421368 CLASP1Q7Z460 1538 aa30.42■■■□□ 2.46
MSL3-208ENST00000421368 TRIM41Q8WV44 630 aa30.4■■■□□ 2.46
MSL3-208ENST00000421368 IGF1RP08069 1367 aa30.37■■■□□ 2.45
MSL3-208ENST00000421368 RIMBP3CA6NJZ7 1639 aa30.36■■■□□ 2.45
MSL3-208ENST00000421368 RIMBP3BA6NNM3 1639 aa30.36■■■□□ 2.45
MSL3-208ENST00000421368 RIMBP3Q9UFD9 1639 aa30.36■■■□□ 2.45
MSL3-208ENST00000421368 CUL7Q14999 1698 aa30.36■■■□□ 2.45
MSL3-208ENST00000421368 CEP170Q5SW79 1584 aa30.32■■■□□ 2.44
MSL3-208ENST00000421368 ARHGEF11O15085 1522 aa30.32■■■□□ 2.44
MSL3-208ENST00000421368 NUP160Q12769 1436 aa30.29■■■□□ 2.44
MSL3-208ENST00000421368 RUSC2Q8N2Y8 1516 aa30.28■■■□□ 2.44
MSL3-208ENST00000421368 CARMIL1Q5VZK9 1371 aa30.18■■■□□ 2.42
MSL3-208ENST00000421368 SHROOM2Q13796 1616 aa30.11■■■□□ 2.41
MSL3-208ENST00000421368 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
MSL3-208ENST00000421368 ARAP1Q96P48 1450 aa30.08■■■□□ 2.41
MSL3-208ENST00000421368 ERCC6L2Q5T890 1561 aa30.03■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms