RNA–Protein interactions for RNA: ENST00000420746.1

TRIM39-206, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 708 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-206ENST00000420746 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
TRIM39-206ENST00000420746 ABCC9O60706 1549 aa22.28■■□□□ 1.16
TRIM39-206ENST00000420746 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
TRIM39-206ENST00000420746 DNAJC5BQ9UF47 199 aa21.56■■□□□ 1.04
TRIM39-206ENST00000420746 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
TRIM39-206ENST00000420746 NACADO15069 1562 aa20.66■□□□□ 0.9
TRIM39-206ENST00000420746 PABPN1Q86U42 306 aaKnown RBP eCLIP20.58■□□□□ 0.89
TRIM39-206ENST00000420746 DNAJC5Q9H3Z4 198 aa20.45■□□□□ 0.86
TRIM39-206ENST00000420746 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
TRIM39-206ENST00000420746 BICRAQ9NZM4 1560 aa20.34■□□□□ 0.85
TRIM39-206ENST00000420746 MYO15BQ96JP2 1530 aa20.21■□□□□ 0.83
TRIM39-206ENST00000420746 CECR2Q9BXF3 1484 aa20.2■□□□□ 0.82
TRIM39-206ENST00000420746 DCAF8L2P0C7V8 631 aa20.17■□□□□ 0.82
TRIM39-206ENST00000420746 SHROOM4Q9ULL8 1493 aa20.16■□□□□ 0.82
TRIM39-206ENST00000420746 CC2D2AQ9P2K1 1620 aa20.12■□□□□ 0.81
TRIM39-206ENST00000420746 EIF4G1Q04637 1599 aaKnown RBP19.92■□□□□ 0.78
TRIM39-206ENST00000420746 CUX2O14529 1486 aa19.65■□□□□ 0.74
TRIM39-206ENST00000420746 DCAF1Q9Y4B6 1507 aa19.63■□□□□ 0.73
TRIM39-206ENST00000420746 SCRIBQ14160 1630 aa19.55■□□□□ 0.72
TRIM39-206ENST00000420746 ZCCHC6Q5VYS8 1495 aaKnown RBP19.5■□□□□ 0.71
TRIM39-206ENST00000420746 ERCC6Q03468 1493 aa19.33■□□□□ 0.68
TRIM39-206ENST00000420746 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
TRIM39-206ENST00000420746 NCAPD3P42695 1498 aa19.09■□□□□ 0.65
TRIM39-206ENST00000420746 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
TRIM39-206ENST00000420746 NESP48681 1621 aa18.91■□□□□ 0.62
TRIM39-206ENST00000420746 ATAD2BQ9ULI0 1458 aa18.88■□□□□ 0.61
TRIM39-206ENST00000420746 HMGXB3Q12766 1538 aa18.88■□□□□ 0.61
TRIM39-206ENST00000420746 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
TRIM39-206ENST00000420746 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
TRIM39-206ENST00000420746 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
TRIM39-206ENST00000420746 SMARCA4P51532 1647 aa18.64■□□□□ 0.57
TRIM39-206ENST00000420746 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
TRIM39-206ENST00000420746 KIF21AQ7Z4S6 1674 aa18.63■□□□□ 0.57
TRIM39-206ENST00000420746 BAZ1AQ9NRL2 1556 aaPredicted RBP18.59■□□□□ 0.57
TRIM39-206ENST00000420746 OSCARQ8IYS5 282 aa18.55■□□□□ 0.56
TRIM39-206ENST00000420746 WDR62O43379 1518 aa18.54■□□□□ 0.56
TRIM39-206ENST00000420746 MRC2Q9UBG0 1479 aa18.54■□□□□ 0.56
TRIM39-206ENST00000420746 PEG3Q9GZU2 1588 aa18.54■□□□□ 0.56
TRIM39-206ENST00000420746 CADPSQ9ULU8 1353 aa18.44■□□□□ 0.54
TRIM39-206ENST00000420746 RIMBP3CA6NJZ7 1639 aa18.36■□□□□ 0.53
TRIM39-206ENST00000420746 RIMBP3BA6NNM3 1639 aa18.36■□□□□ 0.53
TRIM39-206ENST00000420746 RIMBP3Q9UFD9 1639 aa18.36■□□□□ 0.53
TRIM39-206ENST00000420746 CEP164Q9UPV0 1460 aa18.31■□□□□ 0.52
TRIM39-206ENST00000420746 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
TRIM39-206ENST00000420746 FANCD2Q9BXW9 1451 aa18.21■□□□□ 0.51
TRIM39-206ENST00000420746 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
TRIM39-206ENST00000420746 AEBP2Q6ZN18 517 aaPredicted RBP18.2■□□□□ 0.5
TRIM39-206ENST00000420746 TRHP20396 242 aaPredicted RBP18.13■□□□□ 0.49
TRIM39-206ENST00000420746 CYB5RLQ6IPT4 315 aa18.1■□□□□ 0.49
TRIM39-206ENST00000420746 URB2Q14146 1524 aaKnown RBP18.09■□□□□ 0.49
TRIM39-206ENST00000420746 CFTRP13569 1480 aa18.08■□□□□ 0.49
TRIM39-206ENST00000420746 ARAP1Q96P48 1450 aa18.02■□□□□ 0.48
TRIM39-206ENST00000420746 IFT140Q96RY7 1462 aa18■□□□□ 0.47
TRIM39-206ENST00000420746 ZNF608Q9ULD9 1512 aaPredicted RBP17.97■□□□□ 0.47
TRIM39-206ENST00000420746 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
TRIM39-206ENST00000420746 WIZO95785 1651 aa17.91■□□□□ 0.46
TRIM39-206ENST00000420746 EIF4G3O43432 1585 aaKnown RBP17.85■□□□□ 0.45
TRIM39-206ENST00000420746 CHD1O14646 1710 aa17.8■□□□□ 0.44
TRIM39-206ENST00000420746 TOPBP1Q92547 1522 aa17.77■□□□□ 0.44
TRIM39-206ENST00000420746 PRDM2Q13029 1718 aa17.76■□□□□ 0.43
TRIM39-206ENST00000420746 ABCC8Q09428 1581 aa17.75■□□□□ 0.43
TRIM39-206ENST00000420746 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
TRIM39-206ENST00000420746 AQRO60306 1485 aaKnown RBP eCLIP17.7■□□□□ 0.422e-9■■■■■ 28.4
TRIM39-206ENST00000420746 CLASP1Q7Z460 1538 aa17.68■□□□□ 0.42
TRIM39-206ENST00000420746 FBLN2P98095 1184 aa17.68■□□□□ 0.42
TRIM39-206ENST00000420746 TARBP1Q13395 1621 aaKnown RBP17.68■□□□□ 0.42
TRIM39-206ENST00000420746 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
TRIM39-206ENST00000420746 SYNJ1O43426 1573 aa17.59■□□□□ 0.41
TRIM39-206ENST00000420746 POLA1P09884 1462 aaPredicted RBP17.55■□□□□ 0.4
TRIM39-206ENST00000420746 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
TRIM39-206ENST00000420746 GAPVD1Q14C86 1478 aa17.53■□□□□ 0.4
TRIM39-206ENST00000420746 ILDR1Q86SU0 546 aaPredicted RBP17.53■□□□□ 0.4
TRIM39-206ENST00000420746 SNAPC4Q5SXM2 1469 aa17.52■□□□□ 0.4
TRIM39-206ENST00000420746 MAGI1Q96QZ7 1491 aaPredicted RBP17.51■□□□□ 0.39
TRIM39-206ENST00000420746 CHMP7Q8WUX9 453 aaPredicted RBP17.49■□□□□ 0.39
TRIM39-206ENST00000420746 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
TRIM39-206ENST00000420746 TDRD9Q8NDG6 1382 aaKnown RBP17.47■□□□□ 0.39
TRIM39-206ENST00000420746 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
TRIM39-206ENST00000420746 SOGA1O94964 1423 aa17.44■□□□□ 0.38
TRIM39-206ENST00000420746 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
TRIM39-206ENST00000420746 GRIN2BQ13224 1484 aa17.41■□□□□ 0.38
TRIM39-206ENST00000420746 FGD5Q6ZNL6 1462 aa17.31■□□□□ 0.36
TRIM39-206ENST00000420746 KIF13AQ9H1H9 1805 aa17.29■□□□□ 0.36
TRIM39-206ENST00000420746 KDM4FA0A1W2PPD8 638 aa17.29■□□□□ 0.36
TRIM39-206ENST00000420746 ERCC6L2Q5T890 1561 aa17.26■□□□□ 0.35
TRIM39-206ENST00000420746 CEP170Q5SW79 1584 aa17.22■□□□□ 0.35
TRIM39-206ENST00000420746 PBRM1Q86U86 1689 aa17.21■□□□□ 0.35
TRIM39-206ENST00000420746 ABCC10Q5T3U5 1492 aa17.19■□□□□ 0.34
TRIM39-206ENST00000420746 NUP160Q12769 1436 aa17.18■□□□□ 0.34
TRIM39-206ENST00000420746 GRIN2AQ12879 1464 aa17.18■□□□□ 0.34
TRIM39-206ENST00000420746 SHROOM2Q13796 1616 aa17.17■□□□□ 0.34
TRIM39-206ENST00000420746 CUX1P39880 1505 aa17.16■□□□□ 0.34
TRIM39-206ENST00000420746 FAM69CQ0P6D2 419 aa17.14■□□□□ 0.33
TRIM39-206ENST00000420746 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
TRIM39-206ENST00000420746 KDM6BO15054 1643 aa17.13■□□□□ 0.33
TRIM39-206ENST00000420746 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
TRIM39-206ENST00000420746 ABCA10Q8WWZ4 1543 aa17.12■□□□□ 0.33
TRIM39-206ENST00000420746 DIP2BQ9P265 1576 aa17.09■□□□□ 0.33
TRIM39-206ENST00000420746 ADAMTS12P58397 1594 aa17.06■□□□□ 0.32
TRIM39-206ENST00000420746 NPM1P06748 294 aaKnown RBP eCLIP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms