RNA–Protein interactions for RNA: ENST00000419387.5

NUP50-205, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 1,018 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-205ENST00000419387 NISCHQ9Y2I1 1504 aa23.38■■□□□ 1.33
NUP50-205ENST00000419387 AEBP2Q6ZN18 517 aaPredicted RBP23.12■■□□□ 1.29
NUP50-205ENST00000419387 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
NUP50-205ENST00000419387 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
NUP50-205ENST00000419387 ABCC9O60706 1549 aa20.8■□□□□ 0.92
NUP50-205ENST00000419387 RB1CC1Q8TDY2 1594 aa19.84■□□□□ 0.77
NUP50-205ENST00000419387 SENP3Q9H4L4 574 aaPredicted RBP19.84■□□□□ 0.77
NUP50-205ENST00000419387 DCAF8L2P0C7V8 631 aa19.75■□□□□ 0.75
NUP50-205ENST00000419387 NACADO15069 1562 aa19.74■□□□□ 0.75
NUP50-205ENST00000419387 MYO15BQ96JP2 1530 aa19.52■□□□□ 0.72
NUP50-205ENST00000419387 PHF23Q9BUL5 403 aaPredicted RBP19.52■□□□□ 0.72
NUP50-205ENST00000419387 DNAJC5BQ9UF47 199 aa19.45■□□□□ 0.7
NUP50-205ENST00000419387 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
NUP50-205ENST00000419387 ZCCHC6Q5VYS8 1495 aaKnown RBP19.38■□□□□ 0.69
NUP50-205ENST00000419387 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
NUP50-205ENST00000419387 DCAF1Q9Y4B6 1507 aa19.31■□□□□ 0.68
NUP50-205ENST00000419387 BICRAQ9NZM4 1560 aa19.25■□□□□ 0.67
NUP50-205ENST00000419387 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
NUP50-205ENST00000419387 SHROOM4Q9ULL8 1493 aa19.01■□□□□ 0.63
NUP50-205ENST00000419387 CC2D2AQ9P2K1 1620 aa18.78■□□□□ 0.6
NUP50-205ENST00000419387 EIF4G1Q04637 1599 aaKnown RBP18.77■□□□□ 0.6
NUP50-205ENST00000419387 CECR2Q9BXF3 1484 aa18.73■□□□□ 0.59
NUP50-205ENST00000419387 FOXD1Q16676 465 aa18.49■□□□□ 0.55
NUP50-205ENST00000419387 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
NUP50-205ENST00000419387 ATAD2BQ9ULI0 1458 aa18.2■□□□□ 0.5
NUP50-205ENST00000419387 SMARCA4P51532 1647 aa18.18■□□□□ 0.5
NUP50-205ENST00000419387 SMARCA2P51531 1590 aa18.15■□□□□ 0.5
NUP50-205ENST00000419387 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
NUP50-205ENST00000419387 HMGXB3Q12766 1538 aa18.09■□□□□ 0.49
NUP50-205ENST00000419387 BAZ1BQ9UIG0 1483 aaKnown RBP18.02■□□□□ 0.48
NUP50-205ENST00000419387 MROH2BQ7Z745 1585 aa18.01■□□□□ 0.47
NUP50-205ENST00000419387 PEG3Q9GZU2 1588 aa18.01■□□□□ 0.47
NUP50-205ENST00000419387 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
NUP50-205ENST00000419387 NESP48681 1621 aa17.9■□□□□ 0.46
NUP50-205ENST00000419387 CUX2O14529 1486 aa17.88■□□□□ 0.45
NUP50-205ENST00000419387 LAMC3Q9Y6N6 1575 aa17.79■□□□□ 0.44
NUP50-205ENST00000419387 WIZO95785 1651 aa17.78■□□□□ 0.44
NUP50-205ENST00000419387 DNAJC5Q9H3Z4 198 aa17.78■□□□□ 0.44
NUP50-205ENST00000419387 PDS5BQ9NTI5 1447 aa17.72■□□□□ 0.43
NUP50-205ENST00000419387 CADPSQ9ULU8 1353 aa17.72■□□□□ 0.43
NUP50-205ENST00000419387 RSF1Q96T23 1441 aaPredicted RBP17.7■□□□□ 0.42
NUP50-205ENST00000419387 THOC2Q8NI27 1593 aaKnown RBP17.66■□□□□ 0.42
NUP50-205ENST00000419387 KIF21AQ7Z4S6 1674 aa17.63■□□□□ 0.41
NUP50-205ENST00000419387 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
NUP50-205ENST00000419387 MRC2Q9UBG0 1479 aa17.53■□□□□ 0.4
NUP50-205ENST00000419387 CFTRP13569 1480 aa17.52■□□□□ 0.4
NUP50-205ENST00000419387 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
NUP50-205ENST00000419387 FANCD2Q9BXW9 1451 aa17.49■□□□□ 0.39
NUP50-205ENST00000419387 CEP164Q9UPV0 1460 aa17.49■□□□□ 0.39
NUP50-205ENST00000419387 MSH5O43196 834 aa17.47■□□□□ 0.39
NUP50-205ENST00000419387 WDR62O43379 1518 aa17.47■□□□□ 0.39
NUP50-205ENST00000419387 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
NUP50-205ENST00000419387 URB2Q14146 1524 aaKnown RBP17.32■□□□□ 0.36
NUP50-205ENST00000419387 PRDM2Q13029 1718 aa17.27■□□□□ 0.36
NUP50-205ENST00000419387 PLPPR3Q6T4P5 718 aa17.25■□□□□ 0.35
NUP50-205ENST00000419387 PIAS4Q8N2W9 510 aaPredicted RBP17.22■□□□□ 0.35
NUP50-205ENST00000419387 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
NUP50-205ENST00000419387 ABCC8Q09428 1581 aa17.15■□□□□ 0.34
NUP50-205ENST00000419387 IFT140Q96RY7 1462 aa17.15■□□□□ 0.34
NUP50-205ENST00000419387 OSCARQ8IYS5 282 aa17.14■□□□□ 0.33
NUP50-205ENST00000419387 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
NUP50-205ENST00000419387 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
NUP50-205ENST00000419387 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
NUP50-205ENST00000419387 TRIM41Q8WV44 630 aa17.04■□□□□ 0.32
NUP50-205ENST00000419387 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
NUP50-205ENST00000419387 POLA1P09884 1462 aaPredicted RBP16.99■□□□□ 0.31
NUP50-205ENST00000419387 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.316e-6■□□□□ 8.5
NUP50-205ENST00000419387 ADRA2BP18089 450 aa16.98■□□□□ 0.31
NUP50-205ENST00000419387 TARBP1Q13395 1621 aaKnown RBP16.98■□□□□ 0.31
NUP50-205ENST00000419387 EIF4G3O43432 1585 aaKnown RBP16.97■□□□□ 0.31
NUP50-205ENST00000419387 SOGA1O94964 1423 aa16.96■□□□□ 0.3
NUP50-205ENST00000419387 RAD54L2Q9Y4B4 1467 aa16.94■□□□□ 0.3
NUP50-205ENST00000419387 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
NUP50-205ENST00000419387 CUX1P39880 1505 aa16.91■□□□□ 0.3
NUP50-205ENST00000419387 TDRD9Q8NDG6 1382 aaKnown RBP16.9■□□□□ 0.3
NUP50-205ENST00000419387 FBLN2P98095 1184 aa16.87■□□□□ 0.29
NUP50-205ENST00000419387 WDR97A6NE52 1622 aa16.82■□□□□ 0.28
NUP50-205ENST00000419387 RIMBP3CA6NJZ7 1639 aa16.82■□□□□ 0.28
NUP50-205ENST00000419387 RIMBP3BA6NNM3 1639 aa16.82■□□□□ 0.28
NUP50-205ENST00000419387 RIMBP3Q9UFD9 1639 aa16.82■□□□□ 0.28
NUP50-205ENST00000419387 CHD1O14646 1710 aa16.81■□□□□ 0.28
NUP50-205ENST00000419387 ARHGEF11O15085 1522 aa16.8■□□□□ 0.28
NUP50-205ENST00000419387 SNAPC4Q5SXM2 1469 aa16.79■□□□□ 0.28
NUP50-205ENST00000419387 GRIN2BQ13224 1484 aa16.78■□□□□ 0.28
NUP50-205ENST00000419387 CHMP7Q8WUX9 453 aaPredicted RBP16.77■□□□□ 0.28
NUP50-205ENST00000419387 MAGI1Q96QZ7 1491 aaPredicted RBP16.75■□□□□ 0.27
NUP50-205ENST00000419387 ABCA10Q8WWZ4 1543 aa16.74■□□□□ 0.27
NUP50-205ENST00000419387 CYB5RLQ6IPT4 315 aa16.73■□□□□ 0.27
NUP50-205ENST00000419387 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
NUP50-205ENST00000419387 WRNQ14191 1432 aaPredicted RBP eCLIP16.7■□□□□ 0.26
NUP50-205ENST00000419387 SYNJ2O15056 1496 aa16.7■□□□□ 0.26
NUP50-205ENST00000419387 TOP2BQ02880 1626 aa16.67■□□□□ 0.26
NUP50-205ENST00000419387 SYNJ1O43426 1573 aa16.66■□□□□ 0.26
NUP50-205ENST00000419387 ABCA5Q8WWZ7 1642 aa16.66■□□□□ 0.26
NUP50-205ENST00000419387 PBRM1Q86U86 1689 aa16.65■□□□□ 0.26
NUP50-205ENST00000419387 BIVM-ERCC5R4GMW8 1640 aa16.65■□□□□ 0.26
NUP50-205ENST00000419387 CLASP1Q7Z460 1538 aa16.65■□□□□ 0.26
NUP50-205ENST00000419387 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
NUP50-205ENST00000419387 GRIN2AQ12879 1464 aa16.54■□□□□ 0.24
NUP50-205ENST00000419387 FHAD1B1AJZ9 1412 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms